Clone Sequence Records
BO13345.3prime Sequence
754 bp (706 high quality bases) assembled on 2006-05-08
> BO13345.3prime
ATGGTCTAGAAAGCTTGCAGTATCCAAAATAGCTTTGAGTTCTTCTTCCG
TGACCTCCTCGCTTTCACCCACTTCCATTTCCTCGTCGTCACTAAACTCA
ATCATCTCATACTCTTGCTGCACGTCTGCTGGAAGTTCCCTCTGAAAAAC
GGTGGCCGAGGACATGCGGCGTTGATAAGTCTCGTTGACCTCCAGCTGCA
CTTCTAGTTCATCCGCCTGGTTTTGCGGCTCCCGTTCCTCGACGCCGTAC
ATGGCCTTGTTCCGCACCCTCTGGCGCACTTCCAACTGGTTGCCTGTAGA
TGTTGTGGTACAATTCTCATCTGGAGTACTCTTTCTAGCTCCTAGAACAC
TTTGGATATCGGCAAAGACTTCTCGCAAATGGCCGAATATTTGAGAGGGC
GGCAAAGCGTGCTCATGACCAGCCGCCAATTGCTTCTTTTGGGCATTGTA
TGCCGCTTCCAGTTCACACAATGGCTGGCTTGCCTGGTCCAGTGCTCGCA
GACCCTCCAGTTCGTATGTGAGACTGACGCCGTTCGCACGCTGTTGCTTC
TGCATCAAGGCACTCTGCCTCTGTTCCTTGGCACCCGCTACGGTCTCCAC
ACGGTCGTAGTCCACCAGATTGTCCAACCCCTGGCAATAGTCGAGCGCGG
TGAAGCGGAAGGCCTGCTCCTGGGTCAGGCGCCACAGCATGTAAGCGATC
TGATGAGTGTCCTTCCGCTCCGGACTATCCTTGCGCAGATCTAAAGCGTA
ATCT
BO13345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9597-PA | 1092 | CG9597-RA | 358..1089 | 750..19 | 3610 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp45-RA | 1370 | CG9597-RA | 457..1192 | 754..19 | 3635 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15838324..15839059 | 19..754 | 3635 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:52:31 has no hits.
BO13345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:10 Download gff for
BO13345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9597-PA | 354..1092 | 16..754 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:09 Download gff for
BO13345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9597-PA | 354..1092 | 16..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:52:30 Download gff for
BO13345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 457..1198 | 11..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:59 Download gff for
BO13345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 457..1198 | 11..754 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:59 Download gff for
BO13345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15838318..15839059 | 11..754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:52:30 Download gff for
BO13345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11664040..11664781 | 11..754 | 99 | | Plus |
BO13345.5prime Sequence
756 bp (682 high quality bases) assembled on 2006-05-08
> BO13345.5prime
GAAGTTATCAGTCGACATGGAGCTGAATATCTTTGACGACTGCTGGGAGC
TGGTGCAACGATTTCAGCGATTGGTTAATGATGGCGAAAACTGCGAGTTC
GAGGTGTTCTGCCGGTGCTGGCGAGAACTGCAGCTGCAGCACCTCTTCAC
TGCCCAGACGAACCACACAGAGGTGATAGCCACCACACTGGCGGCCCTGC
ATGTGGCCAAGCGACTGTCGTGCTCCCGACGCACCACCGGGGACGTTTTC
CCGGCATCTCGCGCTCAAAGGATCGGAGGTTTCTTTCTGCTCTACGTAAT
CTACTACAAGCAGCCCACGCACAACTTTATTAAGATCGAGGTCTCACCGC
GCACTTGGCAAGAACTAACAGACTACGCTCTAGATCTGCGCAAGGATAGT
CCGGAGCGGAAGGACACTCATCAGATCGCCTACATGCTGTGGCGCCTGAC
CCAGGAGCAGGCCTTCCGCTTCACCGCGCTCGACTATTGCCAGGGGTTGG
ACAATCTGGTGGACTACGACCGTGTGGAGACCGTAGCGGGTGCCAAGGAA
CAGAGGCAGAGTGCCTTGATGCAGAAGCAACAGCGTGCGAACGGCGTCAG
TCTCACATACGAACTGGAGGGTCTGCGAGCACTGGACCAGGCAAGCCAGC
CATTGTGTGAACTGGAAGCGGCATACAATGCCCAAAAGAAGCAATTGGCG
GCTGGTCATGAGCACGCTTTGCCGCCCTCTCAAATATTCGGCCATTTGCG
AGAAGT
BO13345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9597-PA | 1092 | CG9597-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp45-RA | 1370 | CG9597-RA | 104..843 | 17..756 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15838673..15839412 | 756..17 | 3700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:06:20 has no hits.
BO13345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:11 Download gff for
BO13345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9597-PA | 1..740 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:11 Download gff for
BO13345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9597-PA | 1..740 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:34 Download gff for
BO13345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 92..843 | 5..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:35:03 Download gff for
BO13345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 92..843 | 5..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:35:03 Download gff for
BO13345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15838673..15839424 | 5..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:34 Download gff for
BO13345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11664395..11665146 | 5..756 | 99 | | Minus |
BO13345.complete Sequence
1123 bp assembled on 2007-06-22
GenBank Submission: FJ632763
> BO13345.complete
GAAGTTATCAGTCGACATGGAGCTGAATATCTTTGACGACTGCTGGGAGC
TGGTGCAACGATTTCAGCGATTGGTTAATGATGGCGAAAACTGCGAGTTC
GAGGTGTTCTGCCGGTGCTGGCGAGAACTGCAGCTGCAGCACCTCTTCAC
TGCCCAGACGAACCACACAGAGGTGATAGCCACCACACTGGCGGCCCTGC
ATGTGGCCAAGCGACTGTCGTGCTCCCGACGCACCACCGGGGACGTTTTC
CCGGCATCTCGCGCTCAAAGGATCGGAGGTTTCTTTCTGCTCTACGTAAT
CTACTACAAGCAGCCCACGCACAACTTTATTAAGATCGAGGTCTCACCGC
GCACTTGGCAAGAACTAACAGACTACGCTCTAGATCTGCGCAAGGATAGT
CCGGAGCGGAAGGACACTCATCAGATCGCCTACATGCTGTGGCGCCTGAC
CCAGGAGCAGGCCTTCCGCTTCACCGCGCTCGACTATTGCCAGGGGTTGG
ACAATCTGGTGGACTACGACCGTGTGGAGACCGTAGCGGGTGCCAAGGAA
CAGAGGCAGAGTGCCTTGATGCAGAAGCAACAGCGTGCGAACGGCGTCAG
TCTCACATACGAACTGGAGGGTCTGCGAGCACTGGACCAGGCAAGCCAGC
CATTGTGTGAACTGGAAGCGGCATACAATGCCCAAAAGAAGCAATTGGCG
GCTGGTCATGAGCACGCTTTGCCGCCCTCTCAAATATTCGGCCATTTGCG
AGAAGTCTTTGCCGATATCCAAAGTGTTCTAGGAGCTAGAAAGAGTACTC
CAGATGAGAATTGTACCACAACATCTACAGGCAACCAGTTGGAAGTGCGC
CAGAGGGTGCGGAACAAGGCCATGTACGGCGTCGAGGAACGGGAGCCGCA
AAACCAGGCGGATGAACTAGAAGTGCAGCTGGAGGTCAACGAGACTTATC
AACGCCGCATGTCCTCGGCCACCGTTTTTCAGAGGGAACTTCCAGCAGAC
GTGCAGCAAGAGTATGAGATGATTGAGTTTAGTGACGACGAGGAAATGGA
AGTGGGTGAAAGCGAGGAGGTCACGGAAGAAGAACTCAAAGCTATTTTGG
ATACTGCAAGCTTTCTAGACCAT
BO13345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp45-RA | 1092 | CG9597-PA | 1..1089 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp45-RA | 1370 | CG9597-RA | 104..1192 | 17..1105 | 5445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15838324..15839412 | 1105..17 | 5445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:19:35 has no hits.
BO13345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:12 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 1..1092 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:46 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 48..1154 | 5..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:25 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 104..1192 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:13 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 48..1154 | 5..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:59 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp45-RA | 104..1192 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:59 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15838321..15839412 | 17..1107 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:25 Download gff for
BO13345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11664043..11665134 | 17..1107 | 99 | | Minus |
BO13345.pep Sequence
Translation from 16 to 1123
> BO13345.pep
MELNIFDDCWELVQRFQRLVNDGENCEFEVFCRCWRELQLQHLFTAQTNH
TEVIATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQP
THNFIKIEVSPRTWQELTDYALDLRKDSPERKDTHQIAYMLWRLTQEQAF
RFTALDYCQGLDNLVDYDRVETVAGAKEQRQSALMQKQQRANGVSLTYEL
EGLRALDQASQPLCELEAAYNAQKKQLAAGHEHALPPSQIFGHLREVFAD
IQSVLGARKSTPDENCTTTSTGNQLEVRQRVRNKAMYGVEEREPQNQADE
LEVQLEVNETYQRRMSSATVFQRELPADVQQEYEMIEFSDDEEMEVGESE
EVTEEELKAILDTASFLDH
BO13345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp45-PA | 363 | CG9597-PA | 1..363 | 1..363 | 1885 | 100 | Plus |
