Clone BO13348 Report

Search the DGRC for BO13348

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptRpL28-RA
Protein status:BO13348.pep: Imported from assembly
Sequenced Size:472

Clone Sequence Records

BO13348.complete Sequence

472 bp assembled on 2012-05-10

GenBank Submission: KX796431

> BO13348.complete
CCCTTTGAAGTTATCAGTCGACATGGCAACCTCTTCGCACCTCAATTGGT
TGATCATTCGCAACAACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAG
AAGCCCTTCAGCACAGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCG
CTACAGCGGCATCGTGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCG
ACAAGAAGGGCTTCACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGC
CCCGCCAAGAACACCGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTC
CCTGAAGAAGCTGAAGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACC
TGACACAGGCTGCCCTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAG
CCCGCCCCCGTCAAGGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCC
CGAAGCAAGCTTTCTAGACCAT

BO13348.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 435 CG12740-PG 1..432 23..454 2160 100 Plus
RpL28-RF 435 CG12740-PF 1..432 23..454 2160 100 Plus
RpL28-RE 435 CG12740-PE 1..432 23..454 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 851 CG12740-RG 346..777 23..454 2160 100 Plus
RpL28-RF 624 CG12740-RF 119..550 23..454 2160 100 Plus
RpL28-RE 650 CG12740-RE 145..576 23..454 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3221466..3221709 359..116 1220 100 Minus
3L 28110227 3L 3221188..3221285 454..357 490 100 Minus
3L 28110227 3L 3221881..3221974 116..23 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:56:21 has no hits.

BO13348.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-10 10:04:46 Download gff for BO13348.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RF 114..550 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:37 Download gff for BO13348.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 140..576 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:21 Download gff for BO13348.complete
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 140..576 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:21 Download gff for BO13348.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3221186..3221283 359..456 97 <- Minus
3L 3221467..3221709 116..358 100 <- Minus
3L 3221882..3221979 17..115 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:37 Download gff for BO13348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3221186..3221283 359..456 97 <- Minus
arm_3L 3221467..3221709 116..358 100 <- Minus
arm_3L 3221882..3221979 17..115 97   Minus

BO13348.3prime Sequence

353 bp (-60 high quality bases) assembled on 2010-02-20

> BO13348.3prime
TGCGGGCGGAGGGCAGCCTGTGTCAGGTCCTTGCGGTACTTGGAGCCGAT
AAGCAGGTTCTTCAGCTTCTTCAGGGAACGGCGGGGACCGGCCTTGAAGT
CAACACGCACGGTGTTCTTGGCGGGGCGCTGGGCATACTTGCCCTTCTTC
AGCACGGCGGTGAAGCCCTTCTTGTCGGCAGCTGGCACGACTCCCAGGGT
CTTCTTGTGCACGATGCCGCTGTAGCGGTACGAGCTCACGCTGGCCAAGT
TGTTTGGCTCTGTGCTGAAGGGCTTCTTCACATCGCGCTTCTTCAACAAG
AAGGCGTTGTTGTTGCGAATGATCAACCAATTGAGGTGCGAAGAGGTTGC
CAT

BO13348.3prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 17:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-RG 851 CG12740-RG 346..694 353..5 1745 100 Minus
RpL28-RF 624 CG12740-RF 119..467 353..5 1745 100 Minus
RpL28-RE 650 CG12740-RE 145..493 353..5 1745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 17:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3221466..3221709 17..260 1220 100 Plus
3L 28110227 3L 3221881..3221974 260..353 470 100 Plus
Blast to na_te.dros performed on 2015-02-05 17:12:05 has no hits.

BO13348.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 03:28:10 Download gff for BO13348.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RB 179..529 1..353 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 23:52:41 Download gff for BO13348.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 145..495 1..353 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 19:21:07 Download gff for BO13348.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL28-RE 145..495 1..353 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 19:21:07 Download gff for BO13348.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3221467..3221709 18..260 100 <- Plus
3L 3221882..3221974 261..353 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 23:52:41 Download gff for BO13348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3221467..3221709 18..260 100 <- Plus
arm_3L 3221882..3221974 261..353 100   Plus

BO13348.pep Sequence

Translation from 22 to 472

> BO13348.pep
MATSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHK
KTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNL
LIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPEASFLDH

BO13348.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL28-PG 144 CG12740-PG 1..144 1..144 726 100 Plus
RpL28-PF 144 CG12740-PF 1..144 1..144 726 100 Plus
RpL28-PE 144 CG12740-PE 1..144 1..144 726 100 Plus
RpL28-PD 144 CG12740-PD 1..144 1..144 726 100 Plus
RpL28-PA 144 CG12740-PA 1..144 1..144 726 100 Plus