Clone Sequence Records
BO13348.complete Sequence
472 bp assembled on 2012-05-10
GenBank Submission: KX796431
> BO13348.complete
CCCTTTGAAGTTATCAGTCGACATGGCAACCTCTTCGCACCTCAATTGGT
TGATCATTCGCAACAACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAG
AAGCCCTTCAGCACAGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCG
CTACAGCGGCATCGTGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCG
ACAAGAAGGGCTTCACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGC
CCCGCCAAGAACACCGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTC
CCTGAAGAAGCTGAAGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACC
TGACACAGGCTGCCCTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAG
CCCGCCCCCGTCAAGGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCC
CGAAGCAAGCTTTCTAGACCAT
BO13348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 435 | CG12740-PG | 1..432 | 23..454 | 2160 | 100 | Plus |
RpL28-RF | 435 | CG12740-PF | 1..432 | 23..454 | 2160 | 100 | Plus |
RpL28-RE | 435 | CG12740-PE | 1..432 | 23..454 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 851 | CG12740-RG | 346..777 | 23..454 | 2160 | 100 | Plus |
RpL28-RF | 624 | CG12740-RF | 119..550 | 23..454 | 2160 | 100 | Plus |
RpL28-RE | 650 | CG12740-RE | 145..576 | 23..454 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3221466..3221709 | 359..116 | 1220 | 100 | Minus |
3L | 28110227 | 3L | 3221188..3221285 | 454..357 | 490 | 100 | Minus |
3L | 28110227 | 3L | 3221881..3221974 | 116..23 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:56:21 has no hits.
BO13348.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-10 10:04:46 Download gff for
BO13348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RF | 114..550 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:37 Download gff for
BO13348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 140..576 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:21 Download gff for
BO13348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 140..576 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:21 Download gff for
BO13348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3221186..3221283 | 359..456 | 97 | <- | Minus |
3L | 3221467..3221709 | 116..358 | 100 | <- | Minus |
3L | 3221882..3221979 | 17..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:37 Download gff for
BO13348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3221186..3221283 | 359..456 | 97 | <- | Minus |
arm_3L | 3221467..3221709 | 116..358 | 100 | <- | Minus |
arm_3L | 3221882..3221979 | 17..115 | 97 | | Minus |
BO13348.3prime Sequence
353 bp (-60 high quality bases) assembled on 2010-02-20
> BO13348.3prime
TGCGGGCGGAGGGCAGCCTGTGTCAGGTCCTTGCGGTACTTGGAGCCGAT
AAGCAGGTTCTTCAGCTTCTTCAGGGAACGGCGGGGACCGGCCTTGAAGT
CAACACGCACGGTGTTCTTGGCGGGGCGCTGGGCATACTTGCCCTTCTTC
AGCACGGCGGTGAAGCCCTTCTTGTCGGCAGCTGGCACGACTCCCAGGGT
CTTCTTGTGCACGATGCCGCTGTAGCGGTACGAGCTCACGCTGGCCAAGT
TGTTTGGCTCTGTGCTGAAGGGCTTCTTCACATCGCGCTTCTTCAACAAG
AAGGCGTTGTTGTTGCGAATGATCAACCAATTGAGGTGCGAAGAGGTTGC
CAT
BO13348.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 17:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-RG | 851 | CG12740-RG | 346..694 | 353..5 | 1745 | 100 | Minus |
RpL28-RF | 624 | CG12740-RF | 119..467 | 353..5 | 1745 | 100 | Minus |
RpL28-RE | 650 | CG12740-RE | 145..493 | 353..5 | 1745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 17:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3221466..3221709 | 17..260 | 1220 | 100 | Plus |
3L | 28110227 | 3L | 3221881..3221974 | 260..353 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 17:12:05 has no hits.
BO13348.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 03:28:10 Download gff for
BO13348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RB | 179..529 | 1..353 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 23:52:41 Download gff for
BO13348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 145..495 | 1..353 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 19:21:07 Download gff for
BO13348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL28-RE | 145..495 | 1..353 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 19:21:07 Download gff for
BO13348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3221467..3221709 | 18..260 | 100 | <- | Plus |
3L | 3221882..3221974 | 261..353 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 23:52:41 Download gff for
BO13348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3221467..3221709 | 18..260 | 100 | <- | Plus |
arm_3L | 3221882..3221974 | 261..353 | 100 | | Plus |
BO13348.pep Sequence
Translation from 22 to 472
> BO13348.pep
MATSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHK
KTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNL
LIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPEASFLDH
BO13348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL28-PG | 144 | CG12740-PG | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PF | 144 | CG12740-PF | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PE | 144 | CG12740-PE | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PD | 144 | CG12740-PD | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PA | 144 | CG12740-PA | 1..144 | 1..144 | 726 | 100 | Plus |