Clone BO13349 Report

Search the DGRC for BO13349

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG4324-RA
Protein status:BO13349.pep: Imported from assembly
Sequenced Size:1468

Clone Sequence Records

BO13349.complete Sequence

1468 bp assembled on 2009-07-30

GenBank Submission: KX799027

> BO13349.complete
GAAGTTATCCCTCGACATGTACTATCTGAACAACGAGCCAGCCGCCCTTC
CATCTCCCGCAAATCTCGCCCCACGGGATGTGCACTCATCCACATTGGAG
CTGAAGACGGTGTCTATAAATCCGGATGATACCTACACTGTTCAGCAGGC
GATCAATGCCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCGCTCTTGG
TGGGGCTCTGCTGGATGTCCGACTCCATGGAAATGGCCATTCTCAGCATA
TTGGGCCCGTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCCAGCAGGC
ATCCGTCACAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCCAGTTTTT
GGACACAGCTGAGCAACAGATATGGCCGGAAGTCGGCCCTCACATTGTTC
GGAGTACTACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTCCCAGTTA
CGCCTGGCTCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATCGGCTGCG
TTCCACAGTCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAAGCACAAG
GGAAAGTGCGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAGCTTGCTT
TGAAGTGGTCCTAGCACTGGTTGTGTATCCCTATTACGGATGGCGAGGTC
TCTTGGCCCTTTCGGCTACACCCCTACTCATTTTTACCATCCTATCGCCG
TGGCTCAGTGAATCGGCTCGCTATTACTCTTACAACGGTCACAATGATAA
GGCCATCAAGGTTCTGGAACAGATAGCTCACAACAACAAGCGCCACATGC
TGATGGGTCGGCTGATGGCCGACGACGAGCCCAGTTGCGCGGAGAGCTTT
AGATCCCTGCTCAGCCCGAGCCTGTACAGGACCACCATCCTGTTGTGGTT
CCTCTGGCTGGCCTCGGCCTTTTGCTACTACGGCCTGGTGCTGGTCACGA
CCGAGCTGCTGGTGGCCAGGAACAAGGAGAGCCATCCCAATGAGTGCGTC
ACCTTCATGACCTCCGACTTTATGGACCTGCTGTGGATCACCCTGTCCGA
GTTTCCTGGAATACTGCTGACCATCAAGGTGGTCAAGCTGTTTGGCAAGA
AGAAAACCATTGTTCTGCAGTACCTGGCGCTGGTTCTGTGCACTCTGGTG
CTGATGTCGGTGGAAAGTCGCTTCTCCACTTCCGTAACCCTCTTCATTGC
ACGCGGCACGATATCCGGCATCTTCCAGGCCATTTATGTGTACACTCCGG
AAATATACCCAGCTGCCTTGAGATCCGTCGGAGTTTCGGGCTGTTCCGTG
CTGGCCAGACTCGGCGCCATGCTGACCCCTTTCGTGGCGCAGGTGCTGAT
GGACTCGTCCAGAATTCAGGCCATGTCCACGTACGCAATCGTGGGCCTGC
TGGCCTCCATAGCCTGCGTCTTTCTGCCCAGGGAAACTGTTGGCTACCAC
GCAAGCTTTCTAGACCAT

BO13349.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-RC 1437 CG4324-PC 1..1434 17..1450 7170 100 Plus
CG4324-RA 1437 CG4324-PA 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-RC 1739 CG4324-RC 247..1680 17..1450 7170 100 Plus
CG4324-RA 1748 CG4324-RA 256..1689 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24015321..24015717 1167..771 1985 100 Minus
2R 25286936 2R 24014976..24015260 1450..1166 1425 100 Minus
2R 25286936 2R 24016389..24016647 386..128 1295 100 Minus
2R 25286936 2R 24015902..24016027 700..575 630 100 Minus
2R 25286936 2R 24016210..24016335 510..385 630 100 Minus
2R 25286936 2R 24016704..24016815 128..17 560 100 Minus
2R 25286936 2R 24015768..24015840 772..700 365 100 Minus
2R 25286936 2R 24016086..24016149 574..511 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:26:39 has no hits.

BO13349.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:32 Download gff for BO13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 254..1687 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:46 Download gff for BO13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 256..1689 17..1452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:43 Download gff for BO13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 256..1689 17..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:43 Download gff for BO13349.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24016704..24016815 17..128 100   Minus
2R 24016210..24016334 386..510 100 <- Minus
2R 24016390..24016646 129..385 100 <- Minus
2R 24014973..24015258 1168..1452 99 <- Minus
2R 24015321..24015715 773..1167 100 <- Minus
2R 24015768..24015839 701..772 100 <- Minus
2R 24015902..24016027 575..700 100 <- Minus
2R 24016086..24016149 511..574 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:46 Download gff for BO13349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19902496..19902781 1168..1452 99 <- Minus
arm_2R 19902844..19903238 773..1167 100 <- Minus
arm_2R 19903291..19903362 701..772 100 <- Minus
arm_2R 19903425..19903550 575..700 100 <- Minus
arm_2R 19903609..19903672 511..574 100 <- Minus
arm_2R 19903733..19903857 386..510 100 <- Minus
arm_2R 19903913..19904169 129..385 100 <- Minus
arm_2R 19904227..19904338 17..128 100   Minus

BO13349.3prime Sequence

775 bp (750 high quality bases) assembled on 2006-05-08

> BO13349.3prime
ATGGTCTAGAAAGCTTGCGTGGTAGCCAACAGTTTCCCTGGGCAGAAAGA
CGCAGGCTATGGAGGCCAGCAGGCCCACGATTGCGTACGTGGACATGGCC
TGAATTCTGGACGAGTCCATCAGCACCTGCGCCACGAAAGGGGTCAGCAT
GGCGCCGAGTCTGGCCAGCACGGAACAGCCCGAAACTCCGACGGATCTCA
AGGCAGCTGGGTATATTTCCGGAGTGTACACATAAATGGCCTGGAAGATG
CCGGATATCGTGCCGCGTGCAATGAAGAGGGTTACGGAAGTGGAGAAGCG
ACTTTCCACCGACATCAGCACCAGAGTGCACAGAACCAGCGCCAGGTACT
GCAGAACAATGGTTTTCTTCTTGCCAAACAGCTTGACCACCTTGATGGTC
AGCAGTATTCCAGGAAACTCGGACAGGGTGATCCACAGCAGGTCCATAAA
GTCGGAGGTCATGAAGGTGACGCACTCATTGGGATGGCTCTCCTTGTTCC
TGGCCACCAGCAGCTCGGTCGTGACCAGCACCAGGCCGTAGTAGCAAAAG
GCCGAGGCCAGCCAGAGGAACCACAACAGGATGGTGGTCCTGTACAGGCT
CGGGCTGAGCAGGGATCTAAAGCTCTCCGCGCAACTGGGCTCGTCGTCGG
CCATCAGCCGACCCATCAGCATGTGGCGCTTGTTGTTGTGAGCTATCTGT
TCCAGAACCTTGATGGCCTTATCATTGTGACCGTTGTAAGAGTAATAGCG
AGCCGATTCACTGAGCCACGGCGAT

BO13349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-PA 1437 CG4324-RA 678..1434 775..19 3785 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-RC 1739 CG4324-RC 924..1680 775..19 3785 100 Minus
CG4324-RA 1748 CG4324-RA 933..1689 775..19 3785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24015321..24015717 302..698 1985 100 Plus
2R 25286936 2R 24014976..24015260 19..303 1425 100 Plus
2R 25286936 2R 24015768..24015840 697..769 365 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:09:53 has no hits.

BO13349.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:15 Download gff for BO13349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-PA 678..1437 16..775 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:16 Download gff for BO13349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-PA 678..1437 16..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:04 Download gff for BO13349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 933..1689 19..775 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:46 Download gff for BO13349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 933..1689 19..775 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:46 Download gff for BO13349.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24014976..24015258 19..301 100 <- Plus
2R 24015321..24015715 302..696 100 <- Plus
2R 24015768..24015843 697..775 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:04 Download gff for BO13349.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19902499..19902781 19..301 100 <- Plus
arm_2R 19902844..19903238 302..696 100 <- Plus
arm_2R 19903291..19903366 697..775 94   Plus

BO13349.5prime Sequence

840 bp (748 high quality bases) assembled on 2006-05-08

> BO13349.5prime
GAAGTTATCCCTCGACATGTACTATCTGAACAACGAGCCAGCCGCCCTTC
CATCTCCCGCAAATCTCGCCCCACGGGATGTGCACTCATCCACATTGGAG
CTGAAGACGGTGTCTATAAATCCGGATGATACCTACACTGTTCAGCAGGC
GATCAATGCCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCGCTCTTGG
TGGGGCTCTGCTGGATGTCCGACTCCATGGAAATGGCCATTCTCAGCATA
TTGGGCCCGTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCCAGCAGGC
ATCCGTCACAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCCAGTTTTT
GGACACAGCTGAGCAACAGATATGGCCGGAAGTCGGCCCTCACATTGTTC
GGAGTACTACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTCCCAGTTA
CGCCTGGCTCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATCGGCTGCG
TTCCACAGTCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAAGCACAAG
GGAAAGTGCGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAGCTTGCTT
TGAAGTGGTCCTAGCACTGGTTGTGTATCCCTATTACGGATGGCGAGGTC
TCTTGGCCCTTTCGGCTACACCCCTACTCATTTTTACCATCCTATCGCCG
TGGCTCAGTGAATCGGCTCGCTATTACTCTTACAACGGTCACAATGATAA
GGCCATCAAGGTTCTGGAACAGATAGCTCACAACAACAAGCGCCACATGC
TGATGGGTCGGCTGATGGCCGACGACGAACCCAGTTGCGC

BO13349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-PA 1437 CG4324-RA 1..824 17..840 4095 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-RC 1739 CG4324-RC 247..1070 17..840 4105 99.9 Plus
CG4324-RA 1748 CG4324-RA 256..1079 17..840 4105 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24016389..24016647 386..128 1295 100 Minus
2R 25286936 2R 24015902..24016027 700..575 630 100 Minus
2R 25286936 2R 24016210..24016335 510..385 630 100 Minus
2R 25286936 2R 24016704..24016815 128..17 560 100 Minus
2R 25286936 2R 24015768..24015840 772..700 365 100 Minus
2R 25286936 2R 24015648..24015717 840..771 335 98.6 Minus
2R 25286936 2R 24016086..24016149 574..511 320 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:27:15 has no hits.

BO13349.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:16 Download gff for BO13349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:18 Download gff for BO13349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:26 Download gff for BO13349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 251..1079 12..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:09 Download gff for BO13349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4324-RA 251..1079 12..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:09 Download gff for BO13349.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24015648..24015715 773..840 98 <- Minus
2R 24015768..24015839 701..772 100 <- Minus
2R 24015902..24016027 575..700 100 <- Minus
2R 24016086..24016149 511..574 100 <- Minus
2R 24016210..24016334 386..510 100 <- Minus
2R 24016390..24016646 129..385 100 <- Minus
2R 24016704..24016820 12..128 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:26 Download gff for BO13349.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19903171..19903238 773..840 98 <- Minus
arm_2R 19903291..19903362 701..772 100 <- Minus
arm_2R 19903425..19903550 575..700 100 <- Minus
arm_2R 19903609..19903672 511..574 100 <- Minus
arm_2R 19903733..19903857 386..510 100 <- Minus
arm_2R 19903913..19904169 129..385 100 <- Minus
arm_2R 19904227..19904343 12..128 98   Minus

BO13349.pep Sequence

Translation from 16 to 1468

> BO13349.pep
MYYLNNEPAALPSPANLAPRDVHSSTLELKTVSINPDDTYTVQQAINAFG
FGWFHVKLSLLVGLCWMSDSMEMAILSILGPSLFCEWNVTKFQQASVTTV
VFLGMMLSSSFWTQLSNRYGRKSALTLFGVLLVLYSILSSVAPSYAWLLT
LRGLVGFAIGCVPQSVTLYAEFLPTKHKGKCVVLMDCFWALGACFEVVLA
LVVYPYYGWRGLLALSATPLLIFTILSPWLSESARYYSYNGHNDKAIKVL
EQIAHNNKRHMLMGRLMADDEPSCAESFRSLLSPSLYRTTILLWFLWLAS
AFCYYGLVLVTTELLVARNKESHPNECVTFMTSDFMDLLWITLSEFPGIL
LTIKVVKLFGKKKTIVLQYLALVLCTLVLMSVESRFSTSVTLFIARGTIS
GIFQAIYVYTPEIYPAALRSVGVSGCSVLARLGAMLTPFVAQVLMDSSRI
QAMSTYAIVGLLASIACVFLPRETVGYHASFLDH

BO13349.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4324-PC 478 CG4324-PC 1..478 1..478 2465 100 Plus
CG4324-PA 478 CG4324-PA 1..478 1..478 2465 100 Plus
CG3168-PG 632 CG3168-PG 138..627 43..474 364 25 Plus
CG3168-PF 632 CG3168-PF 138..627 43..474 364 25 Plus
CG3168-PE 632 CG3168-PE 138..627 43..474 364 25 Plus