Clone Sequence Records
BO13349.complete Sequence
1468 bp assembled on 2009-07-30
GenBank Submission: KX799027
> BO13349.complete
GAAGTTATCCCTCGACATGTACTATCTGAACAACGAGCCAGCCGCCCTTC
CATCTCCCGCAAATCTCGCCCCACGGGATGTGCACTCATCCACATTGGAG
CTGAAGACGGTGTCTATAAATCCGGATGATACCTACACTGTTCAGCAGGC
GATCAATGCCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCGCTCTTGG
TGGGGCTCTGCTGGATGTCCGACTCCATGGAAATGGCCATTCTCAGCATA
TTGGGCCCGTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCCAGCAGGC
ATCCGTCACAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCCAGTTTTT
GGACACAGCTGAGCAACAGATATGGCCGGAAGTCGGCCCTCACATTGTTC
GGAGTACTACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTCCCAGTTA
CGCCTGGCTCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATCGGCTGCG
TTCCACAGTCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAAGCACAAG
GGAAAGTGCGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAGCTTGCTT
TGAAGTGGTCCTAGCACTGGTTGTGTATCCCTATTACGGATGGCGAGGTC
TCTTGGCCCTTTCGGCTACACCCCTACTCATTTTTACCATCCTATCGCCG
TGGCTCAGTGAATCGGCTCGCTATTACTCTTACAACGGTCACAATGATAA
GGCCATCAAGGTTCTGGAACAGATAGCTCACAACAACAAGCGCCACATGC
TGATGGGTCGGCTGATGGCCGACGACGAGCCCAGTTGCGCGGAGAGCTTT
AGATCCCTGCTCAGCCCGAGCCTGTACAGGACCACCATCCTGTTGTGGTT
CCTCTGGCTGGCCTCGGCCTTTTGCTACTACGGCCTGGTGCTGGTCACGA
CCGAGCTGCTGGTGGCCAGGAACAAGGAGAGCCATCCCAATGAGTGCGTC
ACCTTCATGACCTCCGACTTTATGGACCTGCTGTGGATCACCCTGTCCGA
GTTTCCTGGAATACTGCTGACCATCAAGGTGGTCAAGCTGTTTGGCAAGA
AGAAAACCATTGTTCTGCAGTACCTGGCGCTGGTTCTGTGCACTCTGGTG
CTGATGTCGGTGGAAAGTCGCTTCTCCACTTCCGTAACCCTCTTCATTGC
ACGCGGCACGATATCCGGCATCTTCCAGGCCATTTATGTGTACACTCCGG
AAATATACCCAGCTGCCTTGAGATCCGTCGGAGTTTCGGGCTGTTCCGTG
CTGGCCAGACTCGGCGCCATGCTGACCCCTTTCGTGGCGCAGGTGCTGAT
GGACTCGTCCAGAATTCAGGCCATGTCCACGTACGCAATCGTGGGCCTGC
TGGCCTCCATAGCCTGCGTCTTTCTGCCCAGGGAAACTGTTGGCTACCAC
GCAAGCTTTCTAGACCAT
BO13349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-RC | 1437 | CG4324-PC | 1..1434 | 17..1450 | 7170 | 100 | Plus |
CG4324-RA | 1437 | CG4324-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-RC | 1739 | CG4324-RC | 247..1680 | 17..1450 | 7170 | 100 | Plus |
CG4324-RA | 1748 | CG4324-RA | 256..1689 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24015321..24015717 | 1167..771 | 1985 | 100 | Minus |
2R | 25286936 | 2R | 24014976..24015260 | 1450..1166 | 1425 | 100 | Minus |
2R | 25286936 | 2R | 24016389..24016647 | 386..128 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 24015902..24016027 | 700..575 | 630 | 100 | Minus |
2R | 25286936 | 2R | 24016210..24016335 | 510..385 | 630 | 100 | Minus |
2R | 25286936 | 2R | 24016704..24016815 | 128..17 | 560 | 100 | Minus |
2R | 25286936 | 2R | 24015768..24015840 | 772..700 | 365 | 100 | Minus |
2R | 25286936 | 2R | 24016086..24016149 | 574..511 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:26:39 has no hits.
BO13349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:32 Download gff for
BO13349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 254..1687 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:46 Download gff for
BO13349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 256..1689 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:43 Download gff for
BO13349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 256..1689 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:43 Download gff for
BO13349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24016704..24016815 | 17..128 | 100 | | Minus |
2R | 24016210..24016334 | 386..510 | 100 | <- | Minus |
2R | 24016390..24016646 | 129..385 | 100 | <- | Minus |
2R | 24014973..24015258 | 1168..1452 | 99 | <- | Minus |
2R | 24015321..24015715 | 773..1167 | 100 | <- | Minus |
2R | 24015768..24015839 | 701..772 | 100 | <- | Minus |
2R | 24015902..24016027 | 575..700 | 100 | <- | Minus |
2R | 24016086..24016149 | 511..574 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:46 Download gff for
BO13349.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19902496..19902781 | 1168..1452 | 99 | <- | Minus |
arm_2R | 19902844..19903238 | 773..1167 | 100 | <- | Minus |
arm_2R | 19903291..19903362 | 701..772 | 100 | <- | Minus |
arm_2R | 19903425..19903550 | 575..700 | 100 | <- | Minus |
arm_2R | 19903609..19903672 | 511..574 | 100 | <- | Minus |
arm_2R | 19903733..19903857 | 386..510 | 100 | <- | Minus |
arm_2R | 19903913..19904169 | 129..385 | 100 | <- | Minus |
arm_2R | 19904227..19904338 | 17..128 | 100 | | Minus |
BO13349.3prime Sequence
775 bp (750 high quality bases) assembled on 2006-05-08
> BO13349.3prime
ATGGTCTAGAAAGCTTGCGTGGTAGCCAACAGTTTCCCTGGGCAGAAAGA
CGCAGGCTATGGAGGCCAGCAGGCCCACGATTGCGTACGTGGACATGGCC
TGAATTCTGGACGAGTCCATCAGCACCTGCGCCACGAAAGGGGTCAGCAT
GGCGCCGAGTCTGGCCAGCACGGAACAGCCCGAAACTCCGACGGATCTCA
AGGCAGCTGGGTATATTTCCGGAGTGTACACATAAATGGCCTGGAAGATG
CCGGATATCGTGCCGCGTGCAATGAAGAGGGTTACGGAAGTGGAGAAGCG
ACTTTCCACCGACATCAGCACCAGAGTGCACAGAACCAGCGCCAGGTACT
GCAGAACAATGGTTTTCTTCTTGCCAAACAGCTTGACCACCTTGATGGTC
AGCAGTATTCCAGGAAACTCGGACAGGGTGATCCACAGCAGGTCCATAAA
GTCGGAGGTCATGAAGGTGACGCACTCATTGGGATGGCTCTCCTTGTTCC
TGGCCACCAGCAGCTCGGTCGTGACCAGCACCAGGCCGTAGTAGCAAAAG
GCCGAGGCCAGCCAGAGGAACCACAACAGGATGGTGGTCCTGTACAGGCT
CGGGCTGAGCAGGGATCTAAAGCTCTCCGCGCAACTGGGCTCGTCGTCGG
CCATCAGCCGACCCATCAGCATGTGGCGCTTGTTGTTGTGAGCTATCTGT
TCCAGAACCTTGATGGCCTTATCATTGTGACCGTTGTAAGAGTAATAGCG
AGCCGATTCACTGAGCCACGGCGAT
BO13349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-PA | 1437 | CG4324-RA | 678..1434 | 775..19 | 3785 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-RC | 1739 | CG4324-RC | 924..1680 | 775..19 | 3785 | 100 | Minus |
CG4324-RA | 1748 | CG4324-RA | 933..1689 | 775..19 | 3785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24015321..24015717 | 302..698 | 1985 | 100 | Plus |
2R | 25286936 | 2R | 24014976..24015260 | 19..303 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 24015768..24015840 | 697..769 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:09:53 has no hits.
BO13349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:15 Download gff for
BO13349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-PA | 678..1437 | 16..775 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:16 Download gff for
BO13349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-PA | 678..1437 | 16..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:04 Download gff for
BO13349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 933..1689 | 19..775 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:46 Download gff for
BO13349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 933..1689 | 19..775 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:46 Download gff for
BO13349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24014976..24015258 | 19..301 | 100 | <- | Plus |
2R | 24015321..24015715 | 302..696 | 100 | <- | Plus |
2R | 24015768..24015843 | 697..775 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:04 Download gff for
BO13349.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19902499..19902781 | 19..301 | 100 | <- | Plus |
arm_2R | 19902844..19903238 | 302..696 | 100 | <- | Plus |
arm_2R | 19903291..19903366 | 697..775 | 94 | | Plus |
BO13349.5prime Sequence
840 bp (748 high quality bases) assembled on 2006-05-08
> BO13349.5prime
GAAGTTATCCCTCGACATGTACTATCTGAACAACGAGCCAGCCGCCCTTC
CATCTCCCGCAAATCTCGCCCCACGGGATGTGCACTCATCCACATTGGAG
CTGAAGACGGTGTCTATAAATCCGGATGATACCTACACTGTTCAGCAGGC
GATCAATGCCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCGCTCTTGG
TGGGGCTCTGCTGGATGTCCGACTCCATGGAAATGGCCATTCTCAGCATA
TTGGGCCCGTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCCAGCAGGC
ATCCGTCACAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCCAGTTTTT
GGACACAGCTGAGCAACAGATATGGCCGGAAGTCGGCCCTCACATTGTTC
GGAGTACTACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTCCCAGTTA
CGCCTGGCTCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATCGGCTGCG
TTCCACAGTCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAAGCACAAG
GGAAAGTGCGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAGCTTGCTT
TGAAGTGGTCCTAGCACTGGTTGTGTATCCCTATTACGGATGGCGAGGTC
TCTTGGCCCTTTCGGCTACACCCCTACTCATTTTTACCATCCTATCGCCG
TGGCTCAGTGAATCGGCTCGCTATTACTCTTACAACGGTCACAATGATAA
GGCCATCAAGGTTCTGGAACAGATAGCTCACAACAACAAGCGCCACATGC
TGATGGGTCGGCTGATGGCCGACGACGAACCCAGTTGCGC
BO13349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-PA | 1437 | CG4324-RA | 1..824 | 17..840 | 4095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-RC | 1739 | CG4324-RC | 247..1070 | 17..840 | 4105 | 99.9 | Plus |
CG4324-RA | 1748 | CG4324-RA | 256..1079 | 17..840 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24016389..24016647 | 386..128 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 24015902..24016027 | 700..575 | 630 | 100 | Minus |
2R | 25286936 | 2R | 24016210..24016335 | 510..385 | 630 | 100 | Minus |
2R | 25286936 | 2R | 24016704..24016815 | 128..17 | 560 | 100 | Minus |
2R | 25286936 | 2R | 24015768..24015840 | 772..700 | 365 | 100 | Minus |
2R | 25286936 | 2R | 24015648..24015717 | 840..771 | 335 | 98.6 | Minus |
2R | 25286936 | 2R | 24016086..24016149 | 574..511 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:27:15 has no hits.
BO13349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:16 Download gff for
BO13349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:18 Download gff for
BO13349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:26 Download gff for
BO13349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 251..1079 | 12..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:09 Download gff for
BO13349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4324-RA | 251..1079 | 12..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:09 Download gff for
BO13349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24015648..24015715 | 773..840 | 98 | <- | Minus |
2R | 24015768..24015839 | 701..772 | 100 | <- | Minus |
2R | 24015902..24016027 | 575..700 | 100 | <- | Minus |
2R | 24016086..24016149 | 511..574 | 100 | <- | Minus |
2R | 24016210..24016334 | 386..510 | 100 | <- | Minus |
2R | 24016390..24016646 | 129..385 | 100 | <- | Minus |
2R | 24016704..24016820 | 12..128 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:26 Download gff for
BO13349.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19903171..19903238 | 773..840 | 98 | <- | Minus |
arm_2R | 19903291..19903362 | 701..772 | 100 | <- | Minus |
arm_2R | 19903425..19903550 | 575..700 | 100 | <- | Minus |
arm_2R | 19903609..19903672 | 511..574 | 100 | <- | Minus |
arm_2R | 19903733..19903857 | 386..510 | 100 | <- | Minus |
arm_2R | 19903913..19904169 | 129..385 | 100 | <- | Minus |
arm_2R | 19904227..19904343 | 12..128 | 98 | | Minus |
BO13349.pep Sequence
Translation from 16 to 1468
> BO13349.pep
MYYLNNEPAALPSPANLAPRDVHSSTLELKTVSINPDDTYTVQQAINAFG
FGWFHVKLSLLVGLCWMSDSMEMAILSILGPSLFCEWNVTKFQQASVTTV
VFLGMMLSSSFWTQLSNRYGRKSALTLFGVLLVLYSILSSVAPSYAWLLT
LRGLVGFAIGCVPQSVTLYAEFLPTKHKGKCVVLMDCFWALGACFEVVLA
LVVYPYYGWRGLLALSATPLLIFTILSPWLSESARYYSYNGHNDKAIKVL
EQIAHNNKRHMLMGRLMADDEPSCAESFRSLLSPSLYRTTILLWFLWLAS
AFCYYGLVLVTTELLVARNKESHPNECVTFMTSDFMDLLWITLSEFPGIL
LTIKVVKLFGKKKTIVLQYLALVLCTLVLMSVESRFSTSVTLFIARGTIS
GIFQAIYVYTPEIYPAALRSVGVSGCSVLARLGAMLTPFVAQVLMDSSRI
QAMSTYAIVGLLASIACVFLPRETVGYHASFLDH
BO13349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4324-PC | 478 | CG4324-PC | 1..478 | 1..478 | 2465 | 100 | Plus |
CG4324-PA | 478 | CG4324-PA | 1..478 | 1..478 | 2465 | 100 | Plus |
CG3168-PG | 632 | CG3168-PG | 138..627 | 43..474 | 364 | 25 | Plus |
CG3168-PF | 632 | CG3168-PF | 138..627 | 43..474 | 364 | 25 | Plus |
CG3168-PE | 632 | CG3168-PE | 138..627 | 43..474 | 364 | 25 | Plus |