Clone Sequence Records
BO13350.complete Sequence
2479 bp assembled on 2010-07-15
GenBank Submission: KX794956
> BO13350.complete
GAAGTTATCAGTCGACATGGAAATGGCTATCTGCGGCGGTGGCATCCCCA
CCTTAATGCTACTGATAATGACTGCGATCATAAGTTTGGTCCAAGCTGCA
GATACCTGGCAGCGTTTACCATCCCTAGAAACGTTTTCCTCATATGAGGA
CATGCAGCGTTACTTTGATCAACGGAATTTCCGCAGCATGCGTCAAATTG
ACAATCCCACGGGTGACACCTACTTGGCAGCCTTCAATCAGTACAATGAG
CAAGTGGAGAATCAGTCTCCAAGACGTGTGGCCCAAACCCACTCTAGGAT
CAAGCGTGAGCAACGCCAACTGCCAACGGCACCAAGAATGCTGCGTTTCG
AGCTGGCGGATGCCGTCGAGCCAAGTCCGGAACTTAAGCAAATTCTACGT
CAATATCACGCCAGAGCCCTCAAGGAAAATCCCACTGCTGCAAGTCCAGC
CAGTACCAGTCAGGCACCGACTCCTGCAGTTAGTCCCACCAAGGCCACAA
AAGCCAAGTCCCGGAAACCACGTCGACAGAGACGATCAGTTGTGGGTGCC
CAGCAGCCGGCGGATTTTAAAGTTCAAATGATCCCTTTCGAAGAAACAGA
TGCTAGGGAGCCCGATCCCATCACAGCTCAGCTGATCAAGAAGGCACGCT
CCCTGGATCTCCAGAGTCAGGCCACTAGATCCACAGACTTTCGCCACACT
AAGCCCCAAGTGGCCAGGAAGCAGCCTATTCAGGTGAGGATTCGCAAAAC
AAAGCGCTCCAAGCGTTCGGCTCCGCAGATGATCAAATTTGAGTTGGCCG
ATGCCAAAGCCATGCCCCAAAGATCTGGCAAACAAATGGTATCTGAAGCT
GTACCCACTCTACTGACTATGGAAACCCAGAGGAATAACACCCAAGCTCC
GCAGCTGACTACAACCACTCCTCGGGTGGAGGACAATGATATCCTCACTG
GTGAAGCTACGGCGGAAACCAAACGCATGTATGTTTACAAAGAGGCTCCT
GTCAATTCTGGACATGTGAAGACAAAGAAATCCCTGAGCACTTTGCCCCA
TGAAGTGCAGAAAGTCATTAGCCAGCTGATGAAAGATGGATTGGGTGGCA
AGGCGTATGTCAAGTATCTTCCTGCCCAGAAATCCGACTACGAACACTAC
AAAGCCAAATCCTTGTCATATGGTGGCAAGCCTTTAGTCAACTATGTAAA
GTACATCAATAAGCCGGCTGAACCAGCGGCATCTCCATCTCCTGTCCAAG
TGCACATCCAACCGGTTCCAGTGGTGGAGCAACTACGTTATGTTTACAAA
CCCCACTATGCAGCAGTTGCTCCCACAATAGCCCAACCCATTGTGGTTCA
GGAGGCGCCAGCTCCCACAGCTGCAGTGGAGGAAGTGCATCACACCTACA
CCGCAGAACTGGCACCGCCGCCCACGCAGAGTGTTGAAGTGGTTGTACCT
CAATTTAGACCTTCCAAGCCTGATCCTCTGCTGGCGGAAGCTCCTGCCAT
CTATGGGAAGCCGCAGGAGGCCTACAACTCCTATGAGCTCCAGCCAGAGG
CTTCTCCCCTAATCAAAATCGAGTACCACGCCCAACCGGATGGCATTAAT
GAGCACTACAAACAGCTGCCCGAGTTCCAGCAACTGTCCACGCTTATTGG
CAAGTCTCCCGACGATCAGATCCATGGCCTAACCTACCTCCTGGCCAAGG
AGATGCAGGCCAAGCTGCAAAGGCAGGGCAAACAGCTGGTGGATCGCCCG
CAGGATAGTACAGCTCCGATTCTCTTTCATCCCGGACAAGGCGCCTCCCC
GGCACCCACTCTGAAAACCCTCTTGGAGCACGGATCGCTGGGGGTTCAGC
CGGGTCGATTGATTGGAATGGCTAAGACCAAGCAGTATGTGCCCATTATC
GAACCGGGCAACAACGATGTCAAGGAGCTGCCCGCAGTGCCCAGCAGCGC
GGCCTCCAAGCTGCCCACTCCGAGTTCCTACATCGATTACACCCACGGAC
ATGGCCTATCCAACGGGTATGAAGGTGTGACCAATGCGGAGGAACCGGTT
ACCACAGTAGAGCATGTGGTGCACCATCCCACGGTGGCCACGCAGCTGCA
TCATCAGGTCCTACTTCCAAAGCAGCAGCACCACCACCATCAGCAGCAAC
ACCACGGACTTGTGGCCACTGTCCTTCCCGCGGAACTGGACTCGGACAAG
GGCGTGAATGGTCTGCACTTCGTAAACAGCGATGAGGACAAGTCGCTGCA
GCAGTACGCCTCAAAGTATGAGTTCGGTTATCGCATACGTGATTTCCATA
CCGGCAACGATTTTGGCCACAAGCAGAATCGTGATCTCCATGGCGTGACA
CGCGGCCAGTACCACATCCTTTTGCCGGACGGAAGGATCCAGAATGTCAT
CTACCACGCCGACGACACGGGTTTCCATGCGGATGTTAGCTTCGAAGGCG
CCACGAAGCATGCAAGCTTTCTAGACCAT
BO13350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr50Ca-RA | 2448 | CG13338-PA | 1..2445 | 17..2461 | 12225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr50Ca-RA | 3427 | CG13338-RA | 269..2713 | 17..2461 | 12225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13774338..13776436 | 147..2245 | 10495 | 100 | Plus |
| 2R | 25286936 | 2R | 13786872..13787088 | 2245..2461 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 13774187..13774278 | 58..149 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 13770975..13771016 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6864 | 2092..2154 | 162 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1573 | 2087..2154 | 151 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2591..2675 | 2081..2168 | 144 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2821 | 2089..2154 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6792 | 2093..2154 | 132 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6813 | 2093..2154 | 132 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2467 | 2093..2154 | 130 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1159 | 2061..2161 | 128 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2425 | 2092..2154 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2473 | 2092..2154 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6825 | 2092..2154 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6846 | 2092..2154 | 126 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1128 | 2092..2154 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6768 | 2061..2154 | 124 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2338 | 2120..2154 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2512 | 2093..2154 | 121 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1140 | 2093..2154 | 121 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6750 | 2096..2154 | 115 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2371 | 2086..2154 | 115 | 67.1 | Plus |
BO13350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:09 Download gff for
BO13350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 269..2713 | 17..2463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:47 Download gff for
BO13350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 269..2713 | 17..2463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:38 Download gff for
BO13350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 269..2713 | 17..2463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:38 Download gff for
BO13350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13770975..13771016 | 17..58 | 100 | -> | Plus |
| 2R | 13774188..13774277 | 59..148 | 100 | -> | Plus |
| 2R | 13774340..13776436 | 149..2245 | 100 | -> | Plus |
| 2R | 13786873..13787088 | 2246..2463 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:47 Download gff for
BO13350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9658480..9658521 | 17..58 | 100 | -> | Plus |
| arm_2R | 9661693..9661782 | 59..148 | 100 | -> | Plus |
| arm_2R | 9661845..9663941 | 149..2245 | 100 | -> | Plus |
| arm_2R | 9674378..9674593 | 2246..2463 | 99 | | Plus |
BO13350.5prime Sequence
777 bp (690 high quality bases) assembled on 2006-05-08
> BO13350.5prime
GAAGTTATCCCTCTACATGGAAATGGCTATCTGCGGCGGTGGCATCCCCA
CCTTAATGCTACTGATAATGACTGCGATCATAAGTTTGGTCCAAGCTGCA
GATACCTGGCAGCGTTTACCATCCCTAGAAACGTTTTCCTCATATGAGGA
CATGCAGCGTTACTTTGATCAACGGAATTTCCGCAGCATGCGTCAAATTG
ACAATCCCACGGGTGACACCTACTTGGCAGCCTTCAATCAGTACAATGAG
CAAGTGGAGAATCAGTCTCCAAGACGTGTGGCCCAAACCCACTCTAGGAT
CAAGCGTGAGCAACGCCAACTGCCAACGGCACCAAGAATGCTGCGTTTCG
AGCTGGCGGATGCCGTCGAGCCAAGTCCGGAACTTAAGCAAATTCTACGT
CAATATCACGCCAGAGCCCTCAAGGAAAATCCCACTGCTGCAAGTCCAGC
CAGTACCAGTCAGGCACCGACTCCTGCAGTTAGTCCCACCAAGGCCACAA
AAGCCAAGTCCCGGAAACCACGTCGACAGAGACGATCAGTTGTGGGTGCC
CAGCAGCCGGCGGATTTTAAAGTTCAAATGATCCCTTTCGAAGAAACAGA
TGCTAGGGAGCCCGATCCCATCACAGCTCAGCTGATCAAGAAGGCACGCT
CCCTGGATCTCCAGAGTCAGGCCACTAGATCCACAGACTTTCGCCACACT
AAGCCCCAAGTGGCCAGGAAGCAACCTATTCAGGTGAGGATTCGCAAAAC
AAAGCGCTCCAAGCGTTCGGCTCCGCA
BO13350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13338-PA | 2448 | CG13338-RA | 1..761 | 17..777 | 3780 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr50Ca-RA | 3427 | CG13338-RA | 269..1029 | 17..777 | 3790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13774338..13774968 | 147..777 | 3140 | 99.8 | Plus |
| 2R | 25286936 | 2R | 13774187..13774278 | 58..149 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 13770975..13771016 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:01:38 has no hits.
BO13350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:17 Download gff for
BO13350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13338-PA | 1..760 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:19 Download gff for
BO13350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13338-PA | 1..760 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:17:45 Download gff for
BO13350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 269..1028 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:02 Download gff for
BO13350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr50Ca-RA | 269..1028 | 17..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:02 Download gff for
BO13350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13770975..13771016 | 17..58 | 100 | -> | Plus |
| 2R | 13774188..13774277 | 59..148 | 100 | -> | Plus |
| 2R | 13774340..13774967 | 149..776 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:17:45 Download gff for
BO13350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9658480..9658521 | 17..58 | 100 | -> | Plus |
| arm_2R | 9661693..9661782 | 59..148 | 100 | -> | Plus |
| arm_2R | 9661845..9662472 | 149..776 | 99 | | Plus |
BO13350.pep Sequence
Translation from 16 to 2479
> BO13350.pep
MEMAICGGGIPTLMLLIMTAIISLVQAADTWQRLPSLETFSSYEDMQRYF
DQRNFRSMRQIDNPTGDTYLAAFNQYNEQVENQSPRRVAQTHSRIKREQR
QLPTAPRMLRFELADAVEPSPELKQILRQYHARALKENPTAASPASTSQA
PTPAVSPTKATKAKSRKPRRQRRSVVGAQQPADFKVQMIPFEETDAREPD
PITAQLIKKARSLDLQSQATRSTDFRHTKPQVARKQPIQVRIRKTKRSKR
SAPQMIKFELADAKAMPQRSGKQMVSEAVPTLLTMETQRNNTQAPQLTTT
TPRVEDNDILTGEATAETKRMYVYKEAPVNSGHVKTKKSLSTLPHEVQKV
ISQLMKDGLGGKAYVKYLPAQKSDYEHYKAKSLSYGGKPLVNYVKYINKP
AEPAASPSPVQVHIQPVPVVEQLRYVYKPHYAAVAPTIAQPIVVQEAPAP
TAAVEEVHHTYTAELAPPPTQSVEVVVPQFRPSKPDPLLAEAPAIYGKPQ
EAYNSYELQPEASPLIKIEYHAQPDGINEHYKQLPEFQQLSTLIGKSPDD
QIHGLTYLLAKEMQAKLQRQGKQLVDRPQDSTAPILFHPGQGASPAPTLK
TLLEHGSLGVQPGRLIGMAKTKQYVPIIEPGNNDVKELPAVPSSAASKLP
TPSSYIDYTHGHGLSNGYEGVTNAEEPVTTVEHVVHHPTVATQLHHQVLL
PKQQHHHHQQQHHGLVATVLPAELDSDKGVNGLHFVNSDEDKSLQQYASK
YEFGYRIRDFHTGNDFGHKQNRDLHGVTRGQYHILLPDGRIQNVIYHADD
TGFHADVSFEGATKHASFLDH
BO13350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr50Ca-PA | 815 | CG13338-PA | 1..815 | 1..815 | 4241 | 100 | Plus |
| Cpr56F-PA | 217 | CG9036-PA | 111..186 | 731..810 | 165 | 42.5 | Plus |
| Cpr50Cb-PA | 178 | CG6305-PA | 90..150 | 751..811 | 152 | 51.6 | Plus |
