Clone Sequence Records
BO13351.3prime Sequence
443 bp (442 high quality bases) assembled on 2006-05-08
> BO13351.3prime
ATGGTCTAGAAAGCTTGCCCACTCCTTCTCCAACCAGACGGGCTGCTGGG
TGTGCGAGTGGGAGTAGACCACCGGCACGGGTGCCTGGACGGGAACGGGT
GCTGCGGCATAGGCGGCGGCTGCCTGGACGGGAAGAGCACGGGACAGCAT
TTGTCCGATGGCCAGCACCAGCAGGATGACACCCACGCCCAGTCCCTTGA
TGGAGACGACGGTCAAGGCCGCCAGCAGGGTGGTGATCACGCCCACGACA
AAGGCGCCGGGCACCAAGGCGAAGCTGATGCGCCGCAGGAAATGATGGCC
AAAAGTACGACTTTCCGCCACATCCGAATCCGAATCCGAGCTGTTGGCCG
CCTGCTGCTGACCCAGCACCAAATCACATGCCAAAAAGAGGCAGACGAGG
GCGAACACAATCTTCTGGTTGGCGGCCATGTCGACTGATAACT
BO13351.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-PA | 414 | CG15887-RA | 1..411 | 429..19 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-RA | 863 | CG15887-RA | 103..518 | 434..19 | 2065 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13288000..13288296 | 19..315 | 1485 | 100 | Plus |
| 3R | 32079331 | 3R | 13288592..13288711 | 315..434 | 585 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:19:06 has no hits.
BO13351.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:18 Download gff for
BO13351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-PA | 1..414 | 18..429 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:20 Download gff for
BO13351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-PA | 1..414 | 18..429 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:04 Download gff for
BO13351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 97..518 | 19..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:45:55 Download gff for
BO13351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 97..518 | 19..439 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:45:55 Download gff for
BO13351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13288000..13288295 | 19..314 | 100 | <- | Plus |
| 3R | 13288592..13288711 | 315..435 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:04 Download gff for
BO13351.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9114314..9114433 | 315..435 | 98 | <- | Plus |
| arm_3R | 9113722..9114017 | 19..314 | 100 | <- | Plus |
BO13351.5prime Sequence
443 bp (442 high quality bases) assembled on 2006-05-08
> BO13351.5prime
GAAGTTATCAGTCGACATGGCCGCCAACCAGAAGATTGTGTTCGCCCTCG
TCTGCCTCTTTTTGGCATGTGATTTGGTGCTGGGTCAGCAGCAGGCGGCC
AACAGCTCGGATTCGGATTCGGATGTGGCGGAAAGTCGTACTTTTGGCCA
TCATTTCCTGCGGCGCATCAGCTTCGCCTTGGTGCCCGGCGCCTTTGTCG
TGGGCGTGATCACCACCCTGCTGGCGGCCTTGACCGTCGTCTCCATCAAG
GGACTGGGCGTGGGTGTCATCCTGCTGGTGCTGGCCATCGGACAAATGCT
GTCCCGTGCTCTTCCCGTCCAGGCAGCCGCCGCCTATGCCGCAGCACCCG
TTCCCGTCCAGGCACCCGTGCCGGTGGTCTACTCCCACTCGCACACCCAG
CAGCCCGTCTGGTTGGAGAAGGAGTGGGCAAGCTTTCTAGACC
BO13351.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-PA | 414 | CG15887-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-RA | 863 | CG15887-RA | 103..518 | 12..427 | 2065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13288000..13288296 | 427..131 | 1485 | 100 | Minus |
| 3R | 32079331 | 3R | 13288592..13288711 | 131..12 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:27:08 has no hits.
BO13351.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:19 Download gff for
BO13351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-PA | 1..414 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:22 Download gff for
BO13351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-PA | 1..414 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:24 Download gff for
BO13351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 97..518 | 7..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:05 Download gff for
BO13351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 97..518 | 7..427 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:05 Download gff for
BO13351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13288000..13288295 | 132..427 | 100 | <- | Minus |
| 3R | 13288592..13288711 | 11..131 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:24 Download gff for
BO13351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9113722..9114017 | 132..427 | 100 | <- | Minus |
| arm_3R | 9114314..9114433 | 11..131 | 98 | <- | Minus |
BO13351.complete Sequence
445 bp assembled on 2006-10-11
GenBank Submission: FJ632764
> BO13351.complete
GAAGTTATCAGTCGACATGGCCGCCAACCAGAAGATTGTGTTCGCCCTCG
TCTGCCTCTTTTTGGCATGTGATTTGGTGCTGGGTCAGCAGCAGGCGGCC
AACAGCTCGGATTCGGATTCGGATGTGGCGGAAAGTCGTACTTTTGGCCA
TCATTTCCTGCGGCGCATCAGCTTCGCCTTGGTGCCCGGCGCCTTTGTCG
TGGGCGTGATCACCACCCTGCTGGCGGCCTTGACCGTCGTCTCCATCAAG
GGACTGGGCGTGGGTGTCATCCTGCTGGTGCTGGCCATCGGACAAATGCT
GTCCCGTGCTCTTCCCGTCCAGGCAGCCGCCGCCTATGCCGCAGCACCCG
TTCCCGTCCAGGCACCCGTGCCGGTGGTCTACTCCCACTCGCACACCCAG
CAGCCCGTCTGGTTGGAGAAGGAGTGGGCAAGCTTTCTAGACCAT
BO13351.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-RA | 414 | CG15887-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-RA | 863 | CG15887-RA | 103..518 | 12..427 | 2065 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13288000..13288296 | 427..131 | 1485 | 100 | Minus |
| 3R | 32079331 | 3R | 13288592..13288711 | 131..12 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:02 has no hits.
BO13351.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:51 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 1..414 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:14 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 94..515 | 7..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:11 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 108..518 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:51 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 94..515 | 7..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:11 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15887-RA | 108..518 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:11 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13287998..13288295 | 132..429 | 99 | <- | Minus |
| 3R | 13288592..13288706 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:11 Download gff for
BO13351.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9113720..9114017 | 132..429 | 99 | <- | Minus |
| arm_3R | 9114314..9114428 | 17..131 | 100 | | Minus |
BO13351.pep Sequence
Translation from 16 to 445
> BO13351.pep
MAANQKIVFALVCLFLACDLVLGQQQAANSSDSDSDVAESRTFGHHFLRR
ISFALVPGAFVVGVITTLLAALTVVSIKGLGVGVILLVLAIGQMLSRALP
VQAAAAYAAAPVPVQAPVPVVYSHSHTQQPVWLEKEWASFLDH
BO13351.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15887-PA | 137 | CG15887-PA | 1..137 | 1..137 | 681 | 100 | Plus |
