Clone BO13354 Report

Search the DGRC for BO13354

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptTpnC25D-RA
Protein status:BO13354.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO13354.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-08

> BO13354.3prime
ATGGTCTAGAAAGCTTGCCTCGCCCGCCATCATCTCCATGAATTCATCAA
AGTCCACGGTACCGGATCCATCAGTGTCAATCTCAGCGATGATGCCGTCC
AGATCGCTGGAGGAGAGCTTGTCGTCGAGGGCGGCGAGAATTTCCTTCAG
CGTTGAGGTGGTGATGTAACCATTTCCCTCGCGATCGTACAGACGAAAGG
CCTCTTTCAGCTCCTTCTGGATGGCCTCGGCATCCTCCTCTTCCAGGAAA
TGGGCAGCGATGCTGCAGAAGCCGTCGAAGTTAACCTTGCCGGTGTCCTC
CGGATCGTTGTCGTCGATCAGAGCCTGCAGTTCGCTATCGTCGAACATCT
GACCCATGCTGTTGAGGATCGTCTTCAGACGCAGCGTCTCAATGAAGCCC
GTCTTTTGTGTGTCGAACATTTGGAATGCCTTGCGCATGATGTCCATTTT
CTCGTCGTCCTCCATGTCGACTGATAACT

BO13354.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6514-PA 450 TpnC25D-RA 1..447 465..19 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC25D-RC 1107 CG6514-RC 560..1006 465..19 2235 100 Minus
TpnC25D-RA 645 CG6514-RA 98..544 465..19 2235 100 Minus
TpnC25D-RB 688 CG6514-RB 142..587 464..19 2230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5218446..5218864 463..45 2095 100 Minus
2R 25286936 2R 11274671..11274793 136..258 195 77.2 Plus
Blast to na_te.dros performed on 2015-02-10 21:24:48 has no hits.

BO13354.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:22 Download gff for BO13354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6514-PA 1..450 18..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:26 Download gff for BO13354.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6514-PA 1..450 18..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:07 Download gff for BO13354.3prime
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 87..543 19..473 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:39 Download gff for BO13354.3prime
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 88..544 19..473 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:39 Download gff for BO13354.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5218442..5218864 45..469 99 -> Minus
2L 5218927..5218952 19..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:07 Download gff for BO13354.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5218442..5218864 45..469 99 -> Minus
arm_2L 5218927..5218952 19..44 100   Minus

BO13354.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-05-08

> BO13354.5prime
GAAGTTATCACTCGACATGGAGGACGACGAGAAAATGGACATCATGCGCA
AGGCATTCCAAATGTTCGACACACAAAAGACGGGCTTCATTGAGACGCTG
CGTCTGAAGACGATCCTCAACAGCATGGGTCAGATGTTCGACGATAGCGA
ACTGCAGGCTCTGATCGACGACAACGATCCGGAGGACACCGGCAAGGTTA
ACTTCGACGGCTTCTGCAGCATCGCTGCCCATTTCCTGGAAGAGGAGGAT
GCCGAGGCCATCCAGAAGGAGCTGAAAGAGGCCTTTCGTCTGTACGATCG
CGAGGGAAATGGTTACATCACCACCTCAACGCTGAAGGAAATTCTCGCCG
CCCTCGACGACAAGCTCTCCTCCAGCGATCTGGACGGCATCATCGCTGAG
ATTGACACTGATGGATCCGGTACCGTGGACTTTGATGAATTCATGGAGAT
GATGGCGGGCGAGGCAAGCTTTCTAGACC

BO13354.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6514-PA 450 TpnC25D-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC25D-RC 1107 CG6514-RC 560..1006 17..463 2235 100 Plus
TpnC25D-RA 645 CG6514-RA 98..544 17..463 2235 100 Plus
TpnC25D-RB 688 CG6514-RB 142..587 18..463 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5218446..5218864 19..437 2095 100 Plus
2R 25286936 2R 11274671..11274793 346..224 195 77.2 Minus
Blast to na_te.dros performed on 2015-02-10 20:26:53 has no hits.

BO13354.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:23 Download gff for BO13354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6514-PA 1..450 17..464 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:27 Download gff for BO13354.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6514-PA 1..450 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:16 Download gff for BO13354.5prime
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 97..543 17..463 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:35 Download gff for BO13354.5prime
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 98..544 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:35 Download gff for BO13354.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5218440..5218864 10..437 99 -> Plus
2L 5218927..5218952 438..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:16 Download gff for BO13354.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5218440..5218864 10..437 99 -> Plus
arm_2L 5218927..5218952 438..463 100   Plus

BO13354.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ632765

> BO13354.complete
GAAGTTATCAGTCGACATGGAGGACGACGAGAAAATGGACATCATGCGCA
AGGCATTCCAAATGTTCGACACACAAAAGACGGGCTTCATTGAGACGCTG
CGTCTGAAGACGATCCTCAACAGCATGGGTCAGATGTTCGACGATAGCGA
ACTGCAGGCTCTGATCGACGACAACGATCCGGAGGACACCGGCAAGGTTA
ACTTCGACGGCTTCTGCAGCATCGCTGCCCATTTCCTGGAAGAGGAGGAT
GCCGAGGCCATCCAGAAGGAGCTGAAAGAGGCCTTTCGTCTGTACGATCG
CGAGGGAAATGGTTACATCACCACCTCAACGCTGAAGGAAATTCTCGCCG
CCCTCGACGACAAGCTCTCCTCCAGCGATCTGGACGGCATCATCGCTGAG
ATTGACACTGATGGATCCGGTACCGTGGACTTTGATGAATTCATGGAGAT
GATGGCGGGCGAGGCAAGCTTTCTAGACCAT

BO13354.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC25D-RC 450 CG6514-PC 1..447 17..463 2235 100 Plus
TpnC25D-RA 450 CG6514-PA 1..447 17..463 2235 100 Plus
TpnC25D-RB 432 CG6514-PB 1..429 35..463 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC25D-RC 1107 CG6514-RC 560..1006 17..463 2235 100 Plus
TpnC25D-RA 645 CG6514-RA 98..544 17..463 2235 100 Plus
TpnC25D-RB 688 CG6514-RB 142..587 18..463 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5218446..5218864 19..437 2095 100 Plus
2R 25286936 2R 11274671..11274793 346..224 195 77.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:31:23 has no hits.

BO13354.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:52 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 1..450 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:18 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 82..538 9..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:24 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 97..543 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:52 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 82..538 9..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:23 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC25D-RA 98..544 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:23 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5218445..5218864 17..437 99 -> Plus
2L 5218927..5218952 438..465 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:24 Download gff for BO13354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5218445..5218864 17..437 99 -> Plus
arm_2L 5218927..5218952 438..465 92   Plus

BO13354.pep Sequence

Translation from 16 to 481

> BO13354.pep
MEDDEKMDIMRKAFQMFDTQKTGFIETLRLKTILNSMGQMFDDSELQALI
DDNDPEDTGKVNFDGFCSIAAHFLEEEDAEAIQKELKEAFRLYDREGNGY
ITTSTLKEILAALDDKLSSSDLDGIIAEIDTDGSGTVDFDEFMEMMAGEA
SFLDH

BO13354.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC25D-PC 149 CG6514-PC 1..149 1..149 758 100 Plus
TpnC25D-PA 149 CG6514-PA 1..149 1..149 758 100 Plus
TpnC25D-PB 143 CG6514-PB 1..143 7..149 726 100 Plus
TpnC47D-PB 155 CG9073-PB 11..155 5..149 425 58.6 Plus
TpnC47D-PA 155 CG9073-PA 11..155 5..149 425 58.6 Plus