Clone Sequence Records
BO13354.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-08
> BO13354.3prime
ATGGTCTAGAAAGCTTGCCTCGCCCGCCATCATCTCCATGAATTCATCAA
AGTCCACGGTACCGGATCCATCAGTGTCAATCTCAGCGATGATGCCGTCC
AGATCGCTGGAGGAGAGCTTGTCGTCGAGGGCGGCGAGAATTTCCTTCAG
CGTTGAGGTGGTGATGTAACCATTTCCCTCGCGATCGTACAGACGAAAGG
CCTCTTTCAGCTCCTTCTGGATGGCCTCGGCATCCTCCTCTTCCAGGAAA
TGGGCAGCGATGCTGCAGAAGCCGTCGAAGTTAACCTTGCCGGTGTCCTC
CGGATCGTTGTCGTCGATCAGAGCCTGCAGTTCGCTATCGTCGAACATCT
GACCCATGCTGTTGAGGATCGTCTTCAGACGCAGCGTCTCAATGAAGCCC
GTCTTTTGTGTGTCGAACATTTGGAATGCCTTGCGCATGATGTCCATTTT
CTCGTCGTCCTCCATGTCGACTGATAACT
BO13354.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6514-PA | 450 | TpnC25D-RA | 1..447 | 465..19 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC25D-RC | 1107 | CG6514-RC | 560..1006 | 465..19 | 2235 | 100 | Minus |
TpnC25D-RA | 645 | CG6514-RA | 98..544 | 465..19 | 2235 | 100 | Minus |
TpnC25D-RB | 688 | CG6514-RB | 142..587 | 464..19 | 2230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5218446..5218864 | 463..45 | 2095 | 100 | Minus |
2R | 25286936 | 2R | 11274671..11274793 | 136..258 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:48 has no hits.
BO13354.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:22 Download gff for
BO13354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6514-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:26 Download gff for
BO13354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6514-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:07 Download gff for
BO13354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 87..543 | 19..473 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:39 Download gff for
BO13354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 88..544 | 19..473 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:39 Download gff for
BO13354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5218442..5218864 | 45..469 | 99 | -> | Minus |
2L | 5218927..5218952 | 19..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:07 Download gff for
BO13354.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5218442..5218864 | 45..469 | 99 | -> | Minus |
arm_2L | 5218927..5218952 | 19..44 | 100 | | Minus |
BO13354.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-05-08
> BO13354.5prime
GAAGTTATCACTCGACATGGAGGACGACGAGAAAATGGACATCATGCGCA
AGGCATTCCAAATGTTCGACACACAAAAGACGGGCTTCATTGAGACGCTG
CGTCTGAAGACGATCCTCAACAGCATGGGTCAGATGTTCGACGATAGCGA
ACTGCAGGCTCTGATCGACGACAACGATCCGGAGGACACCGGCAAGGTTA
ACTTCGACGGCTTCTGCAGCATCGCTGCCCATTTCCTGGAAGAGGAGGAT
GCCGAGGCCATCCAGAAGGAGCTGAAAGAGGCCTTTCGTCTGTACGATCG
CGAGGGAAATGGTTACATCACCACCTCAACGCTGAAGGAAATTCTCGCCG
CCCTCGACGACAAGCTCTCCTCCAGCGATCTGGACGGCATCATCGCTGAG
ATTGACACTGATGGATCCGGTACCGTGGACTTTGATGAATTCATGGAGAT
GATGGCGGGCGAGGCAAGCTTTCTAGACC
BO13354.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6514-PA | 450 | TpnC25D-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC25D-RC | 1107 | CG6514-RC | 560..1006 | 17..463 | 2235 | 100 | Plus |
TpnC25D-RA | 645 | CG6514-RA | 98..544 | 17..463 | 2235 | 100 | Plus |
TpnC25D-RB | 688 | CG6514-RB | 142..587 | 18..463 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5218446..5218864 | 19..437 | 2095 | 100 | Plus |
2R | 25286936 | 2R | 11274671..11274793 | 346..224 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:26:53 has no hits.
BO13354.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:23 Download gff for
BO13354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6514-PA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:27 Download gff for
BO13354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6514-PA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:16 Download gff for
BO13354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 97..543 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:35 Download gff for
BO13354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 98..544 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:35 Download gff for
BO13354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5218440..5218864 | 10..437 | 99 | -> | Plus |
2L | 5218927..5218952 | 438..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:16 Download gff for
BO13354.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5218440..5218864 | 10..437 | 99 | -> | Plus |
arm_2L | 5218927..5218952 | 438..463 | 100 | | Plus |
BO13354.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ632765
> BO13354.complete
GAAGTTATCAGTCGACATGGAGGACGACGAGAAAATGGACATCATGCGCA
AGGCATTCCAAATGTTCGACACACAAAAGACGGGCTTCATTGAGACGCTG
CGTCTGAAGACGATCCTCAACAGCATGGGTCAGATGTTCGACGATAGCGA
ACTGCAGGCTCTGATCGACGACAACGATCCGGAGGACACCGGCAAGGTTA
ACTTCGACGGCTTCTGCAGCATCGCTGCCCATTTCCTGGAAGAGGAGGAT
GCCGAGGCCATCCAGAAGGAGCTGAAAGAGGCCTTTCGTCTGTACGATCG
CGAGGGAAATGGTTACATCACCACCTCAACGCTGAAGGAAATTCTCGCCG
CCCTCGACGACAAGCTCTCCTCCAGCGATCTGGACGGCATCATCGCTGAG
ATTGACACTGATGGATCCGGTACCGTGGACTTTGATGAATTCATGGAGAT
GATGGCGGGCGAGGCAAGCTTTCTAGACCAT
BO13354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC25D-RC | 450 | CG6514-PC | 1..447 | 17..463 | 2235 | 100 | Plus |
TpnC25D-RA | 450 | CG6514-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
TpnC25D-RB | 432 | CG6514-PB | 1..429 | 35..463 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC25D-RC | 1107 | CG6514-RC | 560..1006 | 17..463 | 2235 | 100 | Plus |
TpnC25D-RA | 645 | CG6514-RA | 98..544 | 17..463 | 2235 | 100 | Plus |
TpnC25D-RB | 688 | CG6514-RB | 142..587 | 18..463 | 2230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5218446..5218864 | 19..437 | 2095 | 100 | Plus |
2R | 25286936 | 2R | 11274671..11274793 | 346..224 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:31:23 has no hits.
BO13354.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:52 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:18 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 82..538 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:24 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 97..543 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:52 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 82..538 | 9..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:23 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC25D-RA | 98..544 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:23 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5218445..5218864 | 17..437 | 99 | -> | Plus |
2L | 5218927..5218952 | 438..465 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:24 Download gff for
BO13354.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5218445..5218864 | 17..437 | 99 | -> | Plus |
arm_2L | 5218927..5218952 | 438..465 | 92 | | Plus |
BO13354.pep Sequence
Translation from 16 to 481
> BO13354.pep
MEDDEKMDIMRKAFQMFDTQKTGFIETLRLKTILNSMGQMFDDSELQALI
DDNDPEDTGKVNFDGFCSIAAHFLEEEDAEAIQKELKEAFRLYDREGNGY
ITTSTLKEILAALDDKLSSSDLDGIIAEIDTDGSGTVDFDEFMEMMAGEA
SFLDH
BO13354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC25D-PC | 149 | CG6514-PC | 1..149 | 1..149 | 758 | 100 | Plus |
TpnC25D-PA | 149 | CG6514-PA | 1..149 | 1..149 | 758 | 100 | Plus |
TpnC25D-PB | 143 | CG6514-PB | 1..143 | 7..149 | 726 | 100 | Plus |
TpnC47D-PB | 155 | CG9073-PB | 11..155 | 5..149 | 425 | 58.6 | Plus |
TpnC47D-PA | 155 | CG9073-PA | 11..155 | 5..149 | 425 | 58.6 | Plus |