Clone BO13358 Report

Search the DGRC for BO13358

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG7429-RA
Protein status:BO13358.pep: validated full length
Sequenced Size:562

Clone Sequence Records

BO13358.3prime Sequence

560 bp (559 high quality bases) assembled on 2006-05-08

> BO13358.3prime
ATGGTCTAGAAAGCTTGCCTCTCGCTGGCCATCCGCCAGGATCAGATCGG
GTGTGTCTAAAATACGCGGCTCCAGACCTTCGGATTGCATTTTCTGCTTA
ACCGCCGGTGCGGGCACACCCACTTGCACCATTTTGAAGAACTTTCTGTA
ACGTTGATCTTCACAGGCGCGCACACCAACCGATTCAGGCGGGAGTTCCG
GCTCCGTAGGATTCTCGGTGGTCGGTGGTTCCGTGGTGTCCACCATGGAT
GCTTCTTCGTTGCGTTGCTGGTTTGATATCGCTGGCGCTTCGGTAGCCTC
AGTCGCTACATGGTGCTCGGTGGGTATAGACGCCAGCTTGGCCTCCAGGA
TGATGAGGGCGGCCTCCGTCTTCTGCAGCTGCCGTTCCATCTCCACGAAC
TTCGTCTCACAGCCCAGGGCAAATTCATTTAGAAAGGTGCAGGTGCTGAC
GAGGAAATGGTTAACGAAGGCCAGGATGCGTTTCTGGTTCAGCGGCGGTA
TCTGGGTCTTGTCCACATTGCCGGTGATTGCTGCAGTTGCATCCATGTCG
ACTGATAACT

BO13358.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-PA 531 CG7429-RA 1..528 546..19 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-RA 655 CG7429-RA 44..571 546..19 2640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8041249..8041698 505..56 2250 100 Minus
2L 23513712 2L 8041149..8041193 546..502 225 100 Minus
2L 23513712 2L 8041759..8041795 55..19 185 100 Minus
Blast to na_te.dros performed 2015-02-10 16:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 4334..4392 395..339 119 69.5 Minus

BO13358.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:29 Download gff for BO13358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-PA 1..531 16..546 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:35 Download gff for BO13358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-PA 1..531 16..546 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:58 Download gff for BO13358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..581 8..546 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:36 Download gff for BO13358.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..581 8..546 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:36 Download gff for BO13358.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8041149..8041193 502..546 100 -> Minus
2L 8041253..8041698 56..501 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:58 Download gff for BO13358.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8041149..8041193 502..546 100 -> Minus
arm_2L 8041253..8041698 56..501 100 -> Minus

BO13358.5prime Sequence

560 bp (559 high quality bases) assembled on 2006-05-08

> BO13358.5prime
GAAGTTATCACTCGACATGGATGCAACTGCAGCAATCACCGGCAATGTGG
ACAAGACCCAGATACCGCCGCTGAACCAGAAACGCATCCTGGCCTTCGTT
AACCATTTCCTCGTCAGCACCTGCACCTTTCTAAATGAATTTGCCCTGGG
CTGTGAGACGAAGTTCGTGGAGATGGAACGGCAGCTGCAGAAGACGGAGG
CCGCCCTCATCATCCTGGAGGCCAAGCTGGCGTCTATACCCACCGAGCAC
CATGTAGCGACTGAGGCTACCGAAGCGCCAGCGATATCAAACCAGCAACG
CAACGAAGAAGCATCCATGGTGGACACCACGGAACCACCGACCACCGAGA
ATCCTACGGAGCCGGAACTCCCGCCTGAATCGGTTGGTGTGCGCGCCTGT
GAAGATCAACGTTACAGAAAGTTCTTCAAAATGGTGCAAGTGGGTGTGCC
CGCACCGGCGGTTAAGCAGAAAATGCAATCCGAAGGTCTGGAGCCGCGTA
TTTTAGACACACCCGATCTGATCCTGGCGGATGGCCAGCGAGAGGCAAGC
TTTCTAGACC

BO13358.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-PA 531 CG7429-RA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-RA 655 CG7429-RA 44..571 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8041249..8041698 58..507 2250 100 Plus
2L 23513712 2L 8041149..8041193 17..61 225 100 Plus
2L 23513712 2L 8041759..8041795 508..544 185 100 Plus
Blast to na_te.dros performed 2015-02-13 07:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 4334..4392 168..224 119 69.5 Plus

BO13358.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:29 Download gff for BO13358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-PA 1..531 17..547 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:37 Download gff for BO13358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-PA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:34:50 Download gff for BO13358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..581 17..555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:38 Download gff for BO13358.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..581 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:38 Download gff for BO13358.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8041149..8041193 17..61 100 -> Plus
2L 8041253..8041698 62..507 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:34:50 Download gff for BO13358.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8041149..8041193 17..61 100 -> Plus
arm_2L 8041253..8041698 62..507 100 -> Plus

BO13358.complete Sequence

562 bp assembled on 2006-10-11

GenBank Submission: FJ632766

> BO13358.complete
GAAGTTATCAGTCGACATGGATGCAACTGCAGCAATCACCGGCAATGTGG
ACAAGACCCAGATACCGCCGCTGAACCAGAAACGCATCCTGGCCTTCGTT
AACCATTTCCTCGTCAGCACCTGCACCTTTCTAAATGAATTTGCCCTGGG
CTGTGAGACGAAGTTCGTGGAGATGGAACGGCAGCTGCAGAAGACGGAGG
CCGCCCTCATCATCCTGGAGGCCAAGCTGGCGTCTATACCCACCGAGCAC
CATGTAGCGACTGAGGCTACCGAAGCGCCAGCGATATCAAACCAGCAACG
CAACGAAGAAGCATCCATGGTGGACACCACGGAACCACCGACCACCGAGA
ATCCTACGGAGCCGGAACTCCCGCCTGAATCGGTTGGTGTGCGCGCCTGT
GAAGATCAACGTTACAGAAAGTTCTTCAAAATGGTGCAAGTGGGTGTGCC
CGCACCGGCGGTTAAGCAGAAAATGCAATCCGAAGGTCTGGAGCCGCGTA
TTTTAGACACACCCGATCTGATCCTGGCGGATGGCCAGCGAGAGGCAAGC
TTTCTAGACCAT

BO13358.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-RA 531 CG7429-PA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-RA 655 CG7429-RA 44..571 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8041249..8041698 58..507 2250 100 Plus
2L 23513712 2L 8041149..8041193 17..61 225 100 Plus
2L 23513712 2L 8041759..8041795 508..544 185 100 Plus
Blast to na_te.dros performed 2014-11-27 15:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 4334..4392 168..224 119 69.5 Plus

BO13358.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:53 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 1..531 17..547 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:21 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 35..572 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:06 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..571 17..546 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:53 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 35..572 17..555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:04 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
CG7429-RA 44..571 17..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:04 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8041149..8041193 17..61 100 -> Plus
2L 8041253..8041698 62..507 100 -> Plus
2L 8041759..8041795 508..546 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:06 Download gff for BO13358.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8041149..8041193 17..61 100 -> Plus
arm_2L 8041253..8041698 62..507 100 -> Plus
arm_2L 8041759..8041795 508..546 94   Plus

BO13358.pep Sequence

Translation from 16 to 562

> BO13358.pep
MDATAAITGNVDKTQIPPLNQKRILAFVNHFLVSTCTFLNEFALGCETKF
VEMERQLQKTEAALIILEAKLASIPTEHHVATEATEAPAISNQQRNEEAS
MVDTTEPPTTENPTEPELPPESVGVRACEDQRYRKFFKMVQVGVPAPAVK
QKMQSEGLEPRILDTPDLILADGQREASFLDH

BO13358.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7429-PA 176 CG7429-PA 1..176 1..176 899 100 Plus