Clone Sequence Records
BO13358.3prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO13358.3prime
ATGGTCTAGAAAGCTTGCCTCTCGCTGGCCATCCGCCAGGATCAGATCGG
GTGTGTCTAAAATACGCGGCTCCAGACCTTCGGATTGCATTTTCTGCTTA
ACCGCCGGTGCGGGCACACCCACTTGCACCATTTTGAAGAACTTTCTGTA
ACGTTGATCTTCACAGGCGCGCACACCAACCGATTCAGGCGGGAGTTCCG
GCTCCGTAGGATTCTCGGTGGTCGGTGGTTCCGTGGTGTCCACCATGGAT
GCTTCTTCGTTGCGTTGCTGGTTTGATATCGCTGGCGCTTCGGTAGCCTC
AGTCGCTACATGGTGCTCGGTGGGTATAGACGCCAGCTTGGCCTCCAGGA
TGATGAGGGCGGCCTCCGTCTTCTGCAGCTGCCGTTCCATCTCCACGAAC
TTCGTCTCACAGCCCAGGGCAAATTCATTTAGAAAGGTGCAGGTGCTGAC
GAGGAAATGGTTAACGAAGGCCAGGATGCGTTTCTGGTTCAGCGGCGGTA
TCTGGGTCTTGTCCACATTGCCGGTGATTGCTGCAGTTGCATCCATGTCG
ACTGATAACT
BO13358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-PA | 531 | CG7429-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-RA | 655 | CG7429-RA | 44..571 | 546..19 | 2640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8041249..8041698 | 505..56 | 2250 | 100 | Minus |
2L | 23513712 | 2L | 8041149..8041193 | 546..502 | 225 | 100 | Minus |
2L | 23513712 | 2L | 8041759..8041795 | 55..19 | 185 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 4334..4392 | 395..339 | 119 | 69.5 | Minus |
BO13358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:29 Download gff for
BO13358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-PA | 1..531 | 16..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:35 Download gff for
BO13358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-PA | 1..531 | 16..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:58 Download gff for
BO13358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 44..581 | 8..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:36 Download gff for
BO13358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 44..581 | 8..546 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:36 Download gff for
BO13358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8041149..8041193 | 502..546 | 100 | -> | Minus |
2L | 8041253..8041698 | 56..501 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:58 Download gff for
BO13358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8041149..8041193 | 502..546 | 100 | -> | Minus |
arm_2L | 8041253..8041698 | 56..501 | 100 | -> | Minus |
BO13358.5prime Sequence
560 bp (559 high quality bases) assembled on 2006-05-08
> BO13358.5prime
GAAGTTATCACTCGACATGGATGCAACTGCAGCAATCACCGGCAATGTGG
ACAAGACCCAGATACCGCCGCTGAACCAGAAACGCATCCTGGCCTTCGTT
AACCATTTCCTCGTCAGCACCTGCACCTTTCTAAATGAATTTGCCCTGGG
CTGTGAGACGAAGTTCGTGGAGATGGAACGGCAGCTGCAGAAGACGGAGG
CCGCCCTCATCATCCTGGAGGCCAAGCTGGCGTCTATACCCACCGAGCAC
CATGTAGCGACTGAGGCTACCGAAGCGCCAGCGATATCAAACCAGCAACG
CAACGAAGAAGCATCCATGGTGGACACCACGGAACCACCGACCACCGAGA
ATCCTACGGAGCCGGAACTCCCGCCTGAATCGGTTGGTGTGCGCGCCTGT
GAAGATCAACGTTACAGAAAGTTCTTCAAAATGGTGCAAGTGGGTGTGCC
CGCACCGGCGGTTAAGCAGAAAATGCAATCCGAAGGTCTGGAGCCGCGTA
TTTTAGACACACCCGATCTGATCCTGGCGGATGGCCAGCGAGAGGCAAGC
TTTCTAGACC
BO13358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-PA | 531 | CG7429-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-RA | 655 | CG7429-RA | 44..571 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8041249..8041698 | 58..507 | 2250 | 100 | Plus |
2L | 23513712 | 2L | 8041149..8041193 | 17..61 | 225 | 100 | Plus |
2L | 23513712 | 2L | 8041759..8041795 | 508..544 | 185 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 07:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 4334..4392 | 168..224 | 119 | 69.5 | Plus |
BO13358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:29 Download gff for
BO13358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:37 Download gff for
BO13358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-PA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:34:50 Download gff for
BO13358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 44..581 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:38 Download gff for
BO13358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 44..581 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:38 Download gff for
BO13358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8041149..8041193 | 17..61 | 100 | -> | Plus |
2L | 8041253..8041698 | 62..507 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:34:50 Download gff for
BO13358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8041149..8041193 | 17..61 | 100 | -> | Plus |
arm_2L | 8041253..8041698 | 62..507 | 100 | -> | Plus |
BO13358.complete Sequence
562 bp assembled on 2006-10-11
GenBank Submission: FJ632766
> BO13358.complete
GAAGTTATCAGTCGACATGGATGCAACTGCAGCAATCACCGGCAATGTGG
ACAAGACCCAGATACCGCCGCTGAACCAGAAACGCATCCTGGCCTTCGTT
AACCATTTCCTCGTCAGCACCTGCACCTTTCTAAATGAATTTGCCCTGGG
CTGTGAGACGAAGTTCGTGGAGATGGAACGGCAGCTGCAGAAGACGGAGG
CCGCCCTCATCATCCTGGAGGCCAAGCTGGCGTCTATACCCACCGAGCAC
CATGTAGCGACTGAGGCTACCGAAGCGCCAGCGATATCAAACCAGCAACG
CAACGAAGAAGCATCCATGGTGGACACCACGGAACCACCGACCACCGAGA
ATCCTACGGAGCCGGAACTCCCGCCTGAATCGGTTGGTGTGCGCGCCTGT
GAAGATCAACGTTACAGAAAGTTCTTCAAAATGGTGCAAGTGGGTGTGCC
CGCACCGGCGGTTAAGCAGAAAATGCAATCCGAAGGTCTGGAGCCGCGTA
TTTTAGACACACCCGATCTGATCCTGGCGGATGGCCAGCGAGAGGCAAGC
TTTCTAGACCAT
BO13358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-RA | 531 | CG7429-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-RA | 655 | CG7429-RA | 44..571 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8041249..8041698 | 58..507 | 2250 | 100 | Plus |
2L | 23513712 | 2L | 8041149..8041193 | 17..61 | 225 | 100 | Plus |
2L | 23513712 | 2L | 8041759..8041795 | 508..544 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 4334..4392 | 168..224 | 119 | 69.5 | Plus |
BO13358.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:53 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 1..531 | 17..547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:21 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 35..572 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:06 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 44..571 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:53 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 35..572 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:04 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7429-RA | 44..571 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:04 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8041149..8041193 | 17..61 | 100 | -> | Plus |
2L | 8041253..8041698 | 62..507 | 100 | -> | Plus |
2L | 8041759..8041795 | 508..546 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:06 Download gff for
BO13358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8041149..8041193 | 17..61 | 100 | -> | Plus |
arm_2L | 8041253..8041698 | 62..507 | 100 | -> | Plus |
arm_2L | 8041759..8041795 | 508..546 | 94 | | Plus |
BO13358.pep Sequence
Translation from 16 to 562
> BO13358.pep
MDATAAITGNVDKTQIPPLNQKRILAFVNHFLVSTCTFLNEFALGCETKF
VEMERQLQKTEAALIILEAKLASIPTEHHVATEATEAPAISNQQRNEEAS
MVDTTEPPTTENPTEPELPPESVGVRACEDQRYRKFFKMVQVGVPAPAVK
QKMQSEGLEPRILDTPDLILADGQREASFLDH
BO13358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7429-PA | 176 | CG7429-PA | 1..176 | 1..176 | 899 | 100 | Plus |