Clone BO13361 Report

Search the DGRC for BO13361

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG30339-RA
Protein status:BO13361.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO13361.3prime Sequence

781 bp (674 high quality bases) assembled on 2006-05-08

> BO13361.3prime
ATGGTCTAGAAAGCTTGCATCGATGTCGAGTTTTCGGAAGGATCCCTCAG
CGCCAAAAATTGAATCCGCATTAACACGCTTTCCAGGCCGCAGCTGCTCA
TCCACTCCGTACTGGGAATCCTCAGCAAAATAGCTCTCATAGGACAGCAA
TTTCTTCTCCGCTTCCGCCTGAATGTCGGCTATACGTCCATTGTTGCCAC
CATATTCTTCCGGCAGGTATTCGCGTGGTATCACCTCGTTTAATTGCTCG
AGATTTTTATACACGTGAAACCGCTGCTGGAGCTTGCTGGGCATTAGGCT
CTTGGCCAAATTCAGTAACGCCACTCCCTCCTTGGGGCAATTGATCAGAT
GGACTCCTTTCAAGCGAGTGGGCTGTGCCTTCTCAGCGAATATTCCCATC
CTTTTGATGAGCGTGAAATCCAGTTGGGCCAGAAAACTGAGGCTCATTTT
GGCCATGTCAACGATCTCGACGTAGCCGCTAATGTTGCTGTGGTCATCCT
CACGGATTGACTGTTCCGTTATCATGGTTTGGTAGCGGAAGAGATCCAAT
AACTTGAATTCCTTAGGGTCGAATTTCTCATAGTTCGTAAGCTGCAGGCG
GGGGCCATCGGTTCCCCAAGGTTTGGGCAATCGAACATAGGTTCCAGATC
TGCACAAGATTAGGTTCCTTTCGTCCACCAATCTTTTGCCGAAGAGCTCA
GGCATAAGCGTCTTAATAGTATAAAAGTGATCCAGCTTGGACTTGGTCTT
CTCCAGGCTAAACTTGCAGCCTCGCAAGAAG

BO13361.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-PA 927 CG30339-RA 162..924 781..19 3815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-RA 1023 CG30339-RA 203..965 781..19 3815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9602127..9602500 271..644 1870 100 Plus
2R 25286936 2R 9601489..9601741 19..271 1265 100 Plus
2R 25286936 2R 9602562..9602699 644..781 690 100 Plus
Blast to na_te.dros performed on 2015-01-31 11:44:16 has no hits.

BO13361.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:34 Download gff for BO13361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-PA 162..927 15..781 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:42 Download gff for BO13361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-PA 162..927 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:03 Download gff for BO13361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 203..970 14..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:10 Download gff for BO13361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 203..970 14..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:10 Download gff for BO13361.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9601484..9601740 14..270 99 <- Plus
2R 9602127..9602499 271..643 100 <- Plus
2R 9602562..9602699 644..781 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:03 Download gff for BO13361.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5488989..5489245 14..270 99 <- Plus
arm_2R 5489632..5490004 271..643 100 <- Plus
arm_2R 5490067..5490204 644..781 100   Plus

BO13361.5prime Sequence

810 bp (749 high quality bases) assembled on 2006-05-08

> BO13361.5prime
GAAGTTATCAGTCGACATGGCCAATCTGCGTCCCCTGAGCGCCGAACTTC
GTCGCATTGCTGAAACGGAGCTAAACGAAGTGGAGGAGCGAGTGCCCGCG
GATCTGAAAGCTCTTCGGGATTGGTTGGCCAAGCAACCTCATCTGAGGGC
CCGCCAGGATGACCAGTTCCTAGTTGGCTTCTTGCGAGGCTGCAAGTTTA
GCCTGGAGAAGACCAAGTCCAAGCTGGATCACTTTTATACTATTAAGACG
CTTATGCCTGAGCTCTTCGGCAAAAGATTGGTGGACGAAAGGAACCTAAT
CTTGTGCAGATCTGGAACCTATGTTCGATTGCCCAAACCTTGGGGAACCG
ATGGCCCCCGCCTGCAGCTTACGAACTATGAGAAATTCGACCCTAAGGAA
TTCAAGTTATTGGATCTCTTCCGCTACCAAACCATGATAACGGAACAGTC
AATCCGTGAGGATGACCACAGCAACATTAGCGGCTACGTCGAGATCGTTG
ACATGGCCAAAATGAGCCTCAGTTTTCTGGCCCAACTGGATTTCACGCTC
ATCAAAAGGATGGGAATATTCGCTGAGAAGGCACAGCCCACTCGCTTGAA
AGGAGTCCATCTGATCAATTGCCCCAAGGAGGGAGTGGCGTTACTGAATT
TGGCCAAGAGCCTAATGCCCAGCAAGCTCCAGCAGCGGTTTCACGTGTAT
AAAAATCTCGAGCAATTAAACGAGGTGATACCACGCGAATACCTGCCGGA
AGAATATGGTGGCAACAATGGACGTATAGCCCACATTCAGGCGGAAGCGG
AGAAAAAATT

BO13361.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-PA 927 CG30339-RA 1..794 17..810 3920 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-RA 1023 CG30339-RA 42..835 17..810 3940 99.7 Plus
CG12926-RA 1347 CG12926-RA 312..421 129..238 235 80.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9602127..9602500 688..315 1870 100 Minus
2R 25286936 2R 9602562..9602860 315..17 1495 100 Minus
2R 25286936 2R 9601619..9601741 810..688 585 98.4 Minus
2R 25286936 2R 9609173..9609282 238..129 235 80.9 Minus
Blast to na_te.dros performed on 2015-02-12 19:10:57 has no hits.

BO13361.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:35 Download gff for BO13361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-PA 1..794 17..810 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:44 Download gff for BO13361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-PA 1..794 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:36 Download gff for BO13361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 42..835 17..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:52:00 Download gff for BO13361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 42..835 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:52:00 Download gff for BO13361.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9601619..9601740 689..810 98 <- Minus
2R 9602127..9602499 316..688 100 <- Minus
2R 9602562..9602860 17..315 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:36 Download gff for BO13361.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5489124..5489245 689..810 98 <- Minus
arm_2R 5489632..5490004 316..688 100 <- Minus
arm_2R 5490067..5490365 17..315 100   Minus

BO13361.complete Sequence

958 bp assembled on 2006-10-11

GenBank Submission: FJ632767

> BO13361.complete
GAAGTTATCAGTCGACATGGCCAATCTGCGTCCCCTGAGCGCCGAACTTC
GTCGCATTGCTGAAACGGAGCTAAACGAAGTGGAGGAGCGAGTGCCCGCG
GATCTGAAAGCTCTTCGGGATTGGTTGGCCAAGCAACCTCATCTGAGGGC
CCGCCAGGATGACCAGTTCCTAGTTGGCTTCTTGCGAGGCTGCAAGTTTA
GCCTGGAGAAGACCAAGTCCAAGCTGGATCACTTTTATACTATTAAGACG
CTTATGCCTGAGCTCTTCGGCAAAAGATTGGTGGACGAAAGGAACCTAAT
CTTGTGCAGATCTGGAACCTATGTTCGATTGCCCAAACCTTGGGGAACCG
ATGGCCCCCGCCTGCAGCTTACGAACTATGAGAAATTCGACCCTAAGGAA
TTCAAGTTATTGGATCTCTTCCGCTACCAAACCATGATAACGGAACAGTC
AATCCGTGAGGATGACCACAGCAACATTAGCGGCTACGTCGAGATCGTTG
ACATGGCCAAAATGAGCCTCAGTTTTCTGGCCCAACTGGATTTCACGCTC
ATCAAAAGGATGGGAATATTCGCTGAGAAGGCACAGCCCACTCGCTTGAA
AGGAGTCCATCTGATCAATTGCCCCAAGGAGGGAGTGGCGTTACTGAATT
TGGCCAAGAGCCTAATGCCCAGCAAGCTCCAGCAGCGGTTTCACGTGTAT
AAAAATCTCGAGCAATTAAACGAGGTGATACCACGCGAATACCTGCCGGA
AGAATATGGTGGCAACAATGGACGTATAGCCGACATTCAGGCGGAAGCGG
AGAAGAAATTGCTGTCCTATGAGAGCTATTTTGCTGAGGATTCCCAGTAC
GGAGTGGATGAGCAGCTGCGGCCTGGAAAGCGTGTTAATGCGGATTCAAT
TTTTGGCGCTGAGGGATCCTTCCGAAAACTCGACATCGATGCAAGCTTTC
TAGACCAT

BO13361.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-RA 927 CG30339-PA 1..924 17..940 4620 100 Plus
CG12926-RA 942 CG12926-PA 128..237 129..238 235 80.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-RA 1023 CG30339-RA 42..965 17..940 4620 100 Plus
CG12926-RA 1347 CG12926-RA 312..421 129..238 235 80.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9602127..9602500 688..315 1870 100 Minus
2R 25286936 2R 9602562..9602860 315..17 1495 100 Minus
2R 25286936 2R 9601489..9601741 940..688 1265 100 Minus
2R 25286936 2R 9609173..9609282 238..129 235 80.9 Minus
Blast to na_te.dros performed on 2014-11-26 15:21:29 has no hits.

BO13361.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:47 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 1..927 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:05 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 42..970 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:51 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 42..965 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:48 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 42..970 17..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:38 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
CG30339-RA 42..965 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:38 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9601487..9601740 689..942 99 <- Minus
2R 9602127..9602499 316..688 100 <- Minus
2R 9602562..9602860 17..315 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:51 Download gff for BO13361.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5488992..5489245 689..942 99 <- Minus
arm_2R 5489632..5490004 316..688 100 <- Minus
arm_2R 5490067..5490365 17..315 100   Minus

BO13361.pep Sequence

Translation from 16 to 958

> BO13361.pep
MANLRPLSAELRRIAETELNEVEERVPADLKALRDWLAKQPHLRARQDDQ
FLVGFLRGCKFSLEKTKSKLDHFYTIKTLMPELFGKRLVDERNLILCRSG
TYVRLPKPWGTDGPRLQLTNYEKFDPKEFKLLDLFRYQTMITEQSIREDD
HSNISGYVEIVDMAKMSLSFLAQLDFTLIKRMGIFAEKAQPTRLKGVHLI
NCPKEGVALLNLAKSLMPSKLQQRFHVYKNLEQLNEVIPREYLPEEYGGN
NGRIADIQAEAEKKLLSYESYFAEDSQYGVDEQLRPGKRVNADSIFGAEG
SFRKLDIDASFLDH

BO13361.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30339-PA 308 CG30339-PA 1..308 1..308 1588 100 Plus
CG12926-PA 313 CG12926-PA 8..313 3..308 795 46.7 Plus
CG33966-PA 310 CG33966-PA 1..310 1..308 672 42.6 Plus
CG33514-PA 311 CG33514-PA 5..311 4..308 644 42.3 Plus
CG31636-PB 313 CG31636-PB 1..313 1..308 640 42.8 Plus