Clone Sequence Records
BO13361.3prime Sequence
781 bp (674 high quality bases) assembled on 2006-05-08
> BO13361.3prime
ATGGTCTAGAAAGCTTGCATCGATGTCGAGTTTTCGGAAGGATCCCTCAG
CGCCAAAAATTGAATCCGCATTAACACGCTTTCCAGGCCGCAGCTGCTCA
TCCACTCCGTACTGGGAATCCTCAGCAAAATAGCTCTCATAGGACAGCAA
TTTCTTCTCCGCTTCCGCCTGAATGTCGGCTATACGTCCATTGTTGCCAC
CATATTCTTCCGGCAGGTATTCGCGTGGTATCACCTCGTTTAATTGCTCG
AGATTTTTATACACGTGAAACCGCTGCTGGAGCTTGCTGGGCATTAGGCT
CTTGGCCAAATTCAGTAACGCCACTCCCTCCTTGGGGCAATTGATCAGAT
GGACTCCTTTCAAGCGAGTGGGCTGTGCCTTCTCAGCGAATATTCCCATC
CTTTTGATGAGCGTGAAATCCAGTTGGGCCAGAAAACTGAGGCTCATTTT
GGCCATGTCAACGATCTCGACGTAGCCGCTAATGTTGCTGTGGTCATCCT
CACGGATTGACTGTTCCGTTATCATGGTTTGGTAGCGGAAGAGATCCAAT
AACTTGAATTCCTTAGGGTCGAATTTCTCATAGTTCGTAAGCTGCAGGCG
GGGGCCATCGGTTCCCCAAGGTTTGGGCAATCGAACATAGGTTCCAGATC
TGCACAAGATTAGGTTCCTTTCGTCCACCAATCTTTTGCCGAAGAGCTCA
GGCATAAGCGTCTTAATAGTATAAAAGTGATCCAGCTTGGACTTGGTCTT
CTCCAGGCTAAACTTGCAGCCTCGCAAGAAG
BO13361.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-PA | 927 | CG30339-RA | 162..924 | 781..19 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-RA | 1023 | CG30339-RA | 203..965 | 781..19 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9602127..9602500 | 271..644 | 1870 | 100 | Plus |
2R | 25286936 | 2R | 9601489..9601741 | 19..271 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 9602562..9602699 | 644..781 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:44:16 has no hits.
BO13361.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:34 Download gff for
BO13361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-PA | 162..927 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:42 Download gff for
BO13361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-PA | 162..927 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:03 Download gff for
BO13361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 203..970 | 14..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:10 Download gff for
BO13361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 203..970 | 14..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:10 Download gff for
BO13361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9601484..9601740 | 14..270 | 99 | <- | Plus |
2R | 9602127..9602499 | 271..643 | 100 | <- | Plus |
2R | 9602562..9602699 | 644..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:03 Download gff for
BO13361.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5488989..5489245 | 14..270 | 99 | <- | Plus |
arm_2R | 5489632..5490004 | 271..643 | 100 | <- | Plus |
arm_2R | 5490067..5490204 | 644..781 | 100 | | Plus |
BO13361.5prime Sequence
810 bp (749 high quality bases) assembled on 2006-05-08
> BO13361.5prime
GAAGTTATCAGTCGACATGGCCAATCTGCGTCCCCTGAGCGCCGAACTTC
GTCGCATTGCTGAAACGGAGCTAAACGAAGTGGAGGAGCGAGTGCCCGCG
GATCTGAAAGCTCTTCGGGATTGGTTGGCCAAGCAACCTCATCTGAGGGC
CCGCCAGGATGACCAGTTCCTAGTTGGCTTCTTGCGAGGCTGCAAGTTTA
GCCTGGAGAAGACCAAGTCCAAGCTGGATCACTTTTATACTATTAAGACG
CTTATGCCTGAGCTCTTCGGCAAAAGATTGGTGGACGAAAGGAACCTAAT
CTTGTGCAGATCTGGAACCTATGTTCGATTGCCCAAACCTTGGGGAACCG
ATGGCCCCCGCCTGCAGCTTACGAACTATGAGAAATTCGACCCTAAGGAA
TTCAAGTTATTGGATCTCTTCCGCTACCAAACCATGATAACGGAACAGTC
AATCCGTGAGGATGACCACAGCAACATTAGCGGCTACGTCGAGATCGTTG
ACATGGCCAAAATGAGCCTCAGTTTTCTGGCCCAACTGGATTTCACGCTC
ATCAAAAGGATGGGAATATTCGCTGAGAAGGCACAGCCCACTCGCTTGAA
AGGAGTCCATCTGATCAATTGCCCCAAGGAGGGAGTGGCGTTACTGAATT
TGGCCAAGAGCCTAATGCCCAGCAAGCTCCAGCAGCGGTTTCACGTGTAT
AAAAATCTCGAGCAATTAAACGAGGTGATACCACGCGAATACCTGCCGGA
AGAATATGGTGGCAACAATGGACGTATAGCCCACATTCAGGCGGAAGCGG
AGAAAAAATT
BO13361.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-PA | 927 | CG30339-RA | 1..794 | 17..810 | 3920 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-RA | 1023 | CG30339-RA | 42..835 | 17..810 | 3940 | 99.7 | Plus |
CG12926-RA | 1347 | CG12926-RA | 312..421 | 129..238 | 235 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9602127..9602500 | 688..315 | 1870 | 100 | Minus |
2R | 25286936 | 2R | 9602562..9602860 | 315..17 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 9601619..9601741 | 810..688 | 585 | 98.4 | Minus |
2R | 25286936 | 2R | 9609173..9609282 | 238..129 | 235 | 80.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:10:57 has no hits.
BO13361.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:35 Download gff for
BO13361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-PA | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:44 Download gff for
BO13361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-PA | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:15:36 Download gff for
BO13361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 42..835 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:52:00 Download gff for
BO13361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 42..835 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:52:00 Download gff for
BO13361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9601619..9601740 | 689..810 | 98 | <- | Minus |
2R | 9602127..9602499 | 316..688 | 100 | <- | Minus |
2R | 9602562..9602860 | 17..315 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:15:36 Download gff for
BO13361.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5489124..5489245 | 689..810 | 98 | <- | Minus |
arm_2R | 5489632..5490004 | 316..688 | 100 | <- | Minus |
arm_2R | 5490067..5490365 | 17..315 | 100 | | Minus |
BO13361.complete Sequence
958 bp assembled on 2006-10-11
GenBank Submission: FJ632767
> BO13361.complete
GAAGTTATCAGTCGACATGGCCAATCTGCGTCCCCTGAGCGCCGAACTTC
GTCGCATTGCTGAAACGGAGCTAAACGAAGTGGAGGAGCGAGTGCCCGCG
GATCTGAAAGCTCTTCGGGATTGGTTGGCCAAGCAACCTCATCTGAGGGC
CCGCCAGGATGACCAGTTCCTAGTTGGCTTCTTGCGAGGCTGCAAGTTTA
GCCTGGAGAAGACCAAGTCCAAGCTGGATCACTTTTATACTATTAAGACG
CTTATGCCTGAGCTCTTCGGCAAAAGATTGGTGGACGAAAGGAACCTAAT
CTTGTGCAGATCTGGAACCTATGTTCGATTGCCCAAACCTTGGGGAACCG
ATGGCCCCCGCCTGCAGCTTACGAACTATGAGAAATTCGACCCTAAGGAA
TTCAAGTTATTGGATCTCTTCCGCTACCAAACCATGATAACGGAACAGTC
AATCCGTGAGGATGACCACAGCAACATTAGCGGCTACGTCGAGATCGTTG
ACATGGCCAAAATGAGCCTCAGTTTTCTGGCCCAACTGGATTTCACGCTC
ATCAAAAGGATGGGAATATTCGCTGAGAAGGCACAGCCCACTCGCTTGAA
AGGAGTCCATCTGATCAATTGCCCCAAGGAGGGAGTGGCGTTACTGAATT
TGGCCAAGAGCCTAATGCCCAGCAAGCTCCAGCAGCGGTTTCACGTGTAT
AAAAATCTCGAGCAATTAAACGAGGTGATACCACGCGAATACCTGCCGGA
AGAATATGGTGGCAACAATGGACGTATAGCCGACATTCAGGCGGAAGCGG
AGAAGAAATTGCTGTCCTATGAGAGCTATTTTGCTGAGGATTCCCAGTAC
GGAGTGGATGAGCAGCTGCGGCCTGGAAAGCGTGTTAATGCGGATTCAAT
TTTTGGCGCTGAGGGATCCTTCCGAAAACTCGACATCGATGCAAGCTTTC
TAGACCAT
BO13361.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-RA | 927 | CG30339-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
CG12926-RA | 942 | CG12926-PA | 128..237 | 129..238 | 235 | 80.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-RA | 1023 | CG30339-RA | 42..965 | 17..940 | 4620 | 100 | Plus |
CG12926-RA | 1347 | CG12926-RA | 312..421 | 129..238 | 235 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9602127..9602500 | 688..315 | 1870 | 100 | Minus |
2R | 25286936 | 2R | 9602562..9602860 | 315..17 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 9601489..9601741 | 940..688 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 9609173..9609282 | 238..129 | 235 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:21:29 has no hits.
BO13361.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:47 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:05 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 42..970 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:51 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 42..965 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:48 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 42..970 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:38 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30339-RA | 42..965 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:38 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9601487..9601740 | 689..942 | 99 | <- | Minus |
2R | 9602127..9602499 | 316..688 | 100 | <- | Minus |
2R | 9602562..9602860 | 17..315 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:51 Download gff for
BO13361.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5488992..5489245 | 689..942 | 99 | <- | Minus |
arm_2R | 5489632..5490004 | 316..688 | 100 | <- | Minus |
arm_2R | 5490067..5490365 | 17..315 | 100 | | Minus |
BO13361.pep Sequence
Translation from 16 to 958
> BO13361.pep
MANLRPLSAELRRIAETELNEVEERVPADLKALRDWLAKQPHLRARQDDQ
FLVGFLRGCKFSLEKTKSKLDHFYTIKTLMPELFGKRLVDERNLILCRSG
TYVRLPKPWGTDGPRLQLTNYEKFDPKEFKLLDLFRYQTMITEQSIREDD
HSNISGYVEIVDMAKMSLSFLAQLDFTLIKRMGIFAEKAQPTRLKGVHLI
NCPKEGVALLNLAKSLMPSKLQQRFHVYKNLEQLNEVIPREYLPEEYGGN
NGRIADIQAEAEKKLLSYESYFAEDSQYGVDEQLRPGKRVNADSIFGAEG
SFRKLDIDASFLDH
BO13361.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30339-PA | 308 | CG30339-PA | 1..308 | 1..308 | 1588 | 100 | Plus |
CG12926-PA | 313 | CG12926-PA | 8..313 | 3..308 | 795 | 46.7 | Plus |
CG33966-PA | 310 | CG33966-PA | 1..310 | 1..308 | 672 | 42.6 | Plus |
CG33514-PA | 311 | CG33514-PA | 5..311 | 4..308 | 644 | 42.3 | Plus |
CG31636-PB | 313 | CG31636-PB | 1..313 | 1..308 | 640 | 42.8 | Plus |