Clone Sequence Records
BO13366.3prime Sequence
447 bp (446 high quality bases) assembled on 2006-05-08
> BO13366.3prime
TNACTTTAAAGGGCGCGCCAAANGAATGGTCTAGAAAGCTTGCGACCCAG
AAGCCGAGAATTTTGCCTCCCAAATGTTTTCTCCTAGCCTCCTCGTGGTC
CATGATGCCGCCAGAGGTGGTGAGCACAACGTAACCAAACTGACGCGAGG
GCAACAGATTGTTGGTCCATTTCTCGATGTCGTTGATGGGCACATCGAAG
CGGGGCGAGATGACGCCGCACTTGTTTAGCCTACCGGTCAGGTTGACAAC
GATCTTGCCGGAACGATGATCGTCGACGATCTCGAATTCGCCGATATAGC
CATGCTTCATCATCACGGTCAGGAACTTGATGATCACCTTGGAGCAGGGA
CGCAGCAGCACCTGCCGCTTGCCACGCTTCTCGGCGTTGTTTATGCACTT
CAAGGCATCGGCCAATACGTTCATACGCACCATGTCGACTGATAACT
BO13366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2033-PC | 393 | RpS15Aa-RC | 1..385 | 433..49 | 1925 | 100 | Minus |
| CG2033-PA | 393 | RpS15Aa-RA | 1..385 | 433..49 | 1925 | 100 | Minus |
| CG2033-PD | 393 | RpS15Aa-RD | 1..385 | 433..49 | 1925 | 100 | Minus |
| CG2033-PE | 393 | RpS15Aa-RE | 1..385 | 433..49 | 1925 | 100 | Minus |
| CG12324-PA | 393 | RpS15Ab-RA | 1..385 | 433..49 | 1750 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Aa-RF | 674 | CG2033-RF | 69..454 | 434..49 | 1930 | 100 | Minus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..521 | 434..49 | 1930 | 100 | Minus |
| RpS15Aa-RD | 877 | CG2033-RD | 136..521 | 434..49 | 1930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13335993..13336378 | 49..434 | 1930 | 100 | Plus |
| 2R | 25286936 | 2R | 10821813..10822197 | 433..49 | 1820 | 98.2 | Minus |
| 2L | 23513712 | 2L | 14747026..14747075 | 49..98 | 220 | 96 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:12:29 has no hits.
BO13366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:42 Download gff for
BO13366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2033-PA | 1..387 | 44..433 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:53 Download gff for
BO13366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2033-PE | 1..387 | 44..433 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:48 Download gff for
BO13366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 132..523 | 44..441 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:57:26 Download gff for
BO13366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 132..523 | 44..441 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:57:26 Download gff for
BO13366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13335988..13336385 | 44..445 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:48 Download gff for
BO13366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13230021..13230418 | 44..445 | 98 | | Plus |
BO13366.5prime Sequence
422 bp (421 high quality bases) assembled on 2006-05-08
> BO13366.5prime
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCTTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGACGATCATCGTTCCGGCAAGATCG
TTGTCAACCTGACCGGTAGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGTGCCCATCAACGACATCGAGAAATGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCGCAAGCTTTCTAGACC
BO13366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2033-PC | 393 | RpS15Aa-RC | 1..390 | 17..406 | 1950 | 100 | Plus |
| CG2033-PA | 393 | RpS15Aa-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
| CG2033-PD | 393 | RpS15Aa-RD | 1..390 | 17..406 | 1950 | 100 | Plus |
| CG2033-PE | 393 | RpS15Aa-RE | 1..390 | 17..406 | 1950 | 100 | Plus |
| CG12324-PA | 393 | RpS15Ab-RA | 1..390 | 17..406 | 1775 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Aa-RF | 674 | CG2033-RF | 69..459 | 16..406 | 1955 | 100 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..526 | 16..406 | 1955 | 100 | Plus |
| RpS15Aa-RD | 877 | CG2033-RD | 136..526 | 16..406 | 1955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13335988..13336378 | 406..16 | 1955 | 100 | Minus |
| 2R | 25286936 | 2R | 10821813..10822202 | 17..406 | 1845 | 98.2 | Plus |
| 2L | 23513712 | 2L | 14747021..14747075 | 406..352 | 245 | 96.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:36:11 has no hits.
BO13366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:43 Download gff for
BO13366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2033-PA | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:54 Download gff for
BO13366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2033-PE | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:38:41 Download gff for
BO13366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 132..526 | 9..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:34 Download gff for
BO13366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 132..526 | 9..406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:34 Download gff for
BO13366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13335988..13336385 | 5..406 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:38:41 Download gff for
BO13366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13230021..13230418 | 5..406 | 98 | | Minus |
BO13366.complete Sequence
424 bp assembled on 2006-10-11
GenBank Submission: FJ632768
> BO13366.complete
GAAGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCTTGA
AGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGT
CCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGG
CTATATCGGCGAATTCGAGATCGTCGACGATCATCGTTCCGGCAAGATCG
TTGTCAACCTGACCGGTAGGCTAAACAAGTGCGGCGTCATCTCGCCCCGC
TTCGATGTGCCCATCAACGACATCGAGAAATGGACCAACAATCTGTTGCC
CTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGG
ACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTC
TTCTTCGCAAGCTTTCTAGACCAT
BO13366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Aa-RF | 393 | CG2033-PF | 1..390 | 17..406 | 1950 | 100 | Plus |
| RpS15Aa-RE | 393 | CG2033-PE | 1..390 | 17..406 | 1950 | 100 | Plus |
| RpS15Aa-RD | 393 | CG2033-PD | 1..390 | 17..406 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Aa-RF | 674 | CG2033-RF | 69..459 | 16..406 | 1955 | 100 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..526 | 16..406 | 1955 | 100 | Plus |
| RpS15Aa-RD | 877 | CG2033-RD | 136..526 | 16..406 | 1955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13335988..13336378 | 406..16 | 1955 | 100 | Minus |
| 2R | 25286936 | 2R | 10821813..10822202 | 17..406 | 1845 | 98.2 | Plus |
| 2L | 23513712 | 2L | 14747021..14747075 | 406..352 | 245 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:17 has no hits.
BO13366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:54 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 1..393 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:24 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RC | 77..471 | 9..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:16 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 137..526 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:54 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RC | 77..471 | 9..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:52 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Aa-RD | 137..526 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:52 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13335986..13336377 | 17..408 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:16 Download gff for
BO13366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13230019..13230410 | 17..408 | 99 | | Minus |
BO13366.pep Sequence
Translation from 16 to 424
> BO13366.pep
MVRMNVLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEF
EIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFG
YVVLTTSGGIMDHEEARRKHLGGKILGFFFASFLDH
BO13366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Aa-PF | 130 | CG2033-PF | 1..130 | 1..130 | 681 | 100 | Plus |
| RpS15Aa-PE | 130 | CG2033-PE | 1..130 | 1..130 | 681 | 100 | Plus |
| RpS15Aa-PD | 130 | CG2033-PD | 1..130 | 1..130 | 681 | 100 | Plus |
| RpS15Aa-PA | 130 | CG2033-PA | 1..130 | 1..130 | 681 | 100 | Plus |
| RpS15Aa-PC | 130 | CG2033-PC | 1..130 | 1..130 | 681 | 100 | Plus |
