Clone Sequence Records
BO13376.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-05-08
> BO13376.3prime
ATGGTCTAGAAAGCTTGCGATGTTGTCCACGGAGTCGGCGTCATCCTCGG
AGCTGATCTCATCGCCGAACTCGATGTCCTCGTCGAAGCCATCCTCCACG
AATGTGACTGTCTCGTTGATGCGCACCGACTCGGGGAACTCGCCGTACGT
CTTCAGGTTCCTGGCCTCGTCCGGTGTGTATTTGAGGATCACATCAGCCT
TCGAGTCCTGGTAGTCACGCAAGCCCACCAATATGATGTCGCCCTGGTTA
ATCCACACCTTCTTGCGAAGTTTCCCCCGAATGTGACACAGGCGTTTGAC
GCCATCAAAGCACATTGCCTCCAGACGACCGTTGCCCAGCATCTTGGTCA
CCTGCGCGTACTCCTGTTGGTCCTCCTTGAAGATCAGCTCACGCTTCTCG
AACTCGTTCTCGTTCTTACCACGACGACGATTCTTGCCTCCTTTTCCTTT
ATTCTTGGGCATGTCGACTGATAACT
BO13376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8053-PA | 447 | eIF-1A-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
CG8053-PB | 447 | eIF-1A-RB | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-1A-RC | 1646 | CG8053-RC | 131..574 | 462..19 | 2220 | 100 | Minus |
eIF-1A-RB | 1199 | CG8053-RB | 205..648 | 462..19 | 2220 | 100 | Minus |
eIF-1A-RA | 1158 | CG8053-RA | 164..607 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18281692..18281933 | 260..19 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 18274938..18275144 | 462..256 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:07:07 has no hits.
BO13376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:52 Download gff for
BO13376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8053-PB | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:08 Download gff for
BO13376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8053-PB | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:36 Download gff for
BO13376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RA | 156..607 | 19..470 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:10 Download gff for
BO13376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RA | 156..607 | 19..470 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:10 Download gff for
BO13376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18274930..18275141 | 259..470 | 98 | -> | Minus |
3R | 18281694..18281932 | 20..258 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:36 Download gff for
BO13376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14100652..14100863 | 259..470 | 98 | -> | Minus |
arm_3R | 14107416..14107654 | 20..258 | 100 | <- | Minus |
BO13376.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-05-08
> BO13376.5prime
GAAGTTATCACTCGACATGCCCAAGAATAAAGGAAAAGGAGGCAAGAATC
GTCGTCGTGGTAAGAACGAGAACGAGTTCGAGAAGCGTGAGCTGATCTTC
AAGGAGGACCAACAGGAGTACGCGCAGGTGACCAAGATGCTGGGCAACGG
TCGTCTGGAGGCAATGTGCTTTGATGGCGTCAAACGCCTGTGTCACATTC
GGGGGAAACTTCGCAAGAAGGTGTGGATTAACCAGGGCGACATCATATTG
GTGGGCTTGCGTGACTACCAGGACTCGAAGGCTGATGTGATCCTCAAATA
CACACCGGACGAGGCCAGGAACCTGAAGACGTACGGCGAGTTCCCCGAGT
CGGTGCGCATCAACGAGACAGTCACATTCGTGGAGGATGGCTTCGACGAG
GACATCGAGTTCGGCGATGAGATCAGCTCCGAGGATGACGCCGACTCCGT
GGACAACATCGCAAGCTTTCTAGACC
BO13376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8053-PA | 447 | eIF-1A-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG8053-PB | 447 | eIF-1A-RB | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-1A-RC | 1646 | CG8053-RC | 131..574 | 17..460 | 2220 | 100 | Plus |
eIF-1A-RB | 1199 | CG8053-RB | 205..648 | 17..460 | 2220 | 100 | Plus |
eIF-1A-RA | 1158 | CG8053-RA | 164..607 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18281692..18281933 | 219..460 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 18274938..18275144 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:05:51 has no hits.
BO13376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:53 Download gff for
BO13376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8053-PB | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:10 Download gff for
BO13376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8053-PB | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:53 Download gff for
BO13376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RA | 164..607 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:43 Download gff for
BO13376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RA | 164..607 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:43 Download gff for
BO13376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18274938..18275141 | 17..220 | 100 | -> | Plus |
3R | 18281694..18281932 | 221..459 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:53 Download gff for
BO13376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14100660..14100863 | 17..220 | 100 | -> | Plus |
arm_3R | 14107416..14107654 | 221..459 | 100 | <- | Plus |
BO13376.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ632769
> BO13376.complete
GAAGTTATCAGTCGACATGCCCAAGAATAAAGGAAAAGGAGGCAAGAATC
GTCGTCGTGGTAAGAACGAGAACGAGTTCGAGAAGCGTGAGCTGATCTTC
AAGGAGGACCAACAGGAGTACGCGCAGGTGACCAAGATGCTGGGCAACGG
TCGTCTGGAGGCAATGTGCTTTGATGGCGTCAAACGCCTGTGTCACATTC
GGGGGAAACTTCGCAAGAAGGTGTGGATTAACCAGGGCGACATCATATTG
GTGGGCTTGCGTGACTACCAGGACTCGAAGGCTGATGTGATCCTCAAATA
CACACCGGACGAGGCCAGGAACCTGAAGACGTACGGCGAGTTCCCCGAGT
CGGTGCGCATCAACGAGACAGTCACATTCGTGGAGGATGGCTTCGACGAG
GACATCGAGTTCGGCGATGAGATCAGCTCCGAGGATGACGCCGACTCCGT
GGACAACATCGCAAGCTTTCTAGACCAT
BO13376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-1A-RC | 447 | CG8053-PC | 1..444 | 17..460 | 2220 | 100 | Plus |
eIF-1A-RB | 447 | CG8053-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
eIF-1A-RA | 447 | CG8053-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-1A-RC | 1646 | CG8053-RC | 131..574 | 17..460 | 2220 | 100 | Plus |
eIF-1A-RB | 1199 | CG8053-RB | 205..648 | 17..460 | 2220 | 100 | Plus |
eIF-1A-RA | 1158 | CG8053-RA | 164..607 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18281692..18281933 | 219..460 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 18274938..18275144 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:14 has no hits.
BO13376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:55 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RB | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:28 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RB | 197..648 | 9..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:00 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RA | 164..607 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:55 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RB | 197..648 | 9..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:34 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-1A-RA | 164..607 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:34 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18274938..18275141 | 17..220 | 100 | -> | Plus |
3R | 18281694..18281933 | 221..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:00 Download gff for
BO13376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14107416..14107655 | 221..462 | 99 | | Plus |
arm_3R | 14100660..14100863 | 17..220 | 100 | -> | Plus |
BO13376.pep Sequence
Translation from 16 to 478
> BO13376.pep
MPKNKGKGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKMLGNGRLEAM
CFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDSKADVILKYTPDEA
RNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSEDDADSVDNIAS
FLDH
BO13376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-1A-PC | 148 | CG8053-PC | 1..148 | 1..148 | 777 | 100 | Plus |
eIF-1A-PB | 148 | CG8053-PB | 1..148 | 1..148 | 777 | 100 | Plus |
eIF-1A-PA | 148 | CG8053-PA | 1..148 | 1..148 | 777 | 100 | Plus |