Clone BO13376 Report

Search the DGRC for BO13376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:76
Vector:pDNR-Dual
Associated Gene/TranscripteIF-1A-RA
Protein status:BO13376.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO13376.3prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13376.3prime
ATGGTCTAGAAAGCTTGCGATGTTGTCCACGGAGTCGGCGTCATCCTCGG
AGCTGATCTCATCGCCGAACTCGATGTCCTCGTCGAAGCCATCCTCCACG
AATGTGACTGTCTCGTTGATGCGCACCGACTCGGGGAACTCGCCGTACGT
CTTCAGGTTCCTGGCCTCGTCCGGTGTGTATTTGAGGATCACATCAGCCT
TCGAGTCCTGGTAGTCACGCAAGCCCACCAATATGATGTCGCCCTGGTTA
ATCCACACCTTCTTGCGAAGTTTCCCCCGAATGTGACACAGGCGTTTGAC
GCCATCAAAGCACATTGCCTCCAGACGACCGTTGCCCAGCATCTTGGTCA
CCTGCGCGTACTCCTGTTGGTCCTCCTTGAAGATCAGCTCACGCTTCTCG
AACTCGTTCTCGTTCTTACCACGACGACGATTCTTGCCTCCTTTTCCTTT
ATTCTTGGGCATGTCGACTGATAACT

BO13376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8053-PA 447 eIF-1A-RA 1..444 462..19 2220 100 Minus
CG8053-PB 447 eIF-1A-RB 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-RC 1646 CG8053-RC 131..574 462..19 2220 100 Minus
eIF-1A-RB 1199 CG8053-RB 205..648 462..19 2220 100 Minus
eIF-1A-RA 1158 CG8053-RA 164..607 462..19 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18281692..18281933 260..19 1210 100 Minus
3R 32079331 3R 18274938..18275144 462..256 1035 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:07:07 has no hits.

BO13376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:52 Download gff for BO13376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8053-PB 1..447 16..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:08 Download gff for BO13376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8053-PB 1..447 16..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:36 Download gff for BO13376.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 156..607 19..470 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:10 Download gff for BO13376.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 156..607 19..470 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:10 Download gff for BO13376.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18274930..18275141 259..470 98 -> Minus
3R 18281694..18281932 20..258 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:36 Download gff for BO13376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14100652..14100863 259..470 98 -> Minus
arm_3R 14107416..14107654 20..258 100 <- Minus

BO13376.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13376.5prime
GAAGTTATCACTCGACATGCCCAAGAATAAAGGAAAAGGAGGCAAGAATC
GTCGTCGTGGTAAGAACGAGAACGAGTTCGAGAAGCGTGAGCTGATCTTC
AAGGAGGACCAACAGGAGTACGCGCAGGTGACCAAGATGCTGGGCAACGG
TCGTCTGGAGGCAATGTGCTTTGATGGCGTCAAACGCCTGTGTCACATTC
GGGGGAAACTTCGCAAGAAGGTGTGGATTAACCAGGGCGACATCATATTG
GTGGGCTTGCGTGACTACCAGGACTCGAAGGCTGATGTGATCCTCAAATA
CACACCGGACGAGGCCAGGAACCTGAAGACGTACGGCGAGTTCCCCGAGT
CGGTGCGCATCAACGAGACAGTCACATTCGTGGAGGATGGCTTCGACGAG
GACATCGAGTTCGGCGATGAGATCAGCTCCGAGGATGACGCCGACTCCGT
GGACAACATCGCAAGCTTTCTAGACC

BO13376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8053-PA 447 eIF-1A-RA 1..444 17..460 2220 100 Plus
CG8053-PB 447 eIF-1A-RB 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-RC 1646 CG8053-RC 131..574 17..460 2220 100 Plus
eIF-1A-RB 1199 CG8053-RB 205..648 17..460 2220 100 Plus
eIF-1A-RA 1158 CG8053-RA 164..607 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18281692..18281933 219..460 1210 100 Plus
3R 32079331 3R 18274938..18275144 17..223 1035 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:05:51 has no hits.

BO13376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:53 Download gff for BO13376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8053-PB 1..447 17..463 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:10 Download gff for BO13376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8053-PB 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:53 Download gff for BO13376.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 164..607 17..460 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:43 Download gff for BO13376.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 164..607 17..460 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:43 Download gff for BO13376.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18274938..18275141 17..220 100 -> Plus
3R 18281694..18281932 221..459 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:53 Download gff for BO13376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14100660..14100863 17..220 100 -> Plus
arm_3R 14107416..14107654 221..459 100 <- Plus

BO13376.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ632769

> BO13376.complete
GAAGTTATCAGTCGACATGCCCAAGAATAAAGGAAAAGGAGGCAAGAATC
GTCGTCGTGGTAAGAACGAGAACGAGTTCGAGAAGCGTGAGCTGATCTTC
AAGGAGGACCAACAGGAGTACGCGCAGGTGACCAAGATGCTGGGCAACGG
TCGTCTGGAGGCAATGTGCTTTGATGGCGTCAAACGCCTGTGTCACATTC
GGGGGAAACTTCGCAAGAAGGTGTGGATTAACCAGGGCGACATCATATTG
GTGGGCTTGCGTGACTACCAGGACTCGAAGGCTGATGTGATCCTCAAATA
CACACCGGACGAGGCCAGGAACCTGAAGACGTACGGCGAGTTCCCCGAGT
CGGTGCGCATCAACGAGACAGTCACATTCGTGGAGGATGGCTTCGACGAG
GACATCGAGTTCGGCGATGAGATCAGCTCCGAGGATGACGCCGACTCCGT
GGACAACATCGCAAGCTTTCTAGACCAT

BO13376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-RC 447 CG8053-PC 1..444 17..460 2220 100 Plus
eIF-1A-RB 447 CG8053-PB 1..444 17..460 2220 100 Plus
eIF-1A-RA 447 CG8053-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-RC 1646 CG8053-RC 131..574 17..460 2220 100 Plus
eIF-1A-RB 1199 CG8053-RB 205..648 17..460 2220 100 Plus
eIF-1A-RA 1158 CG8053-RA 164..607 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18281692..18281933 219..460 1210 100 Plus
3R 32079331 3R 18274938..18275144 17..223 1035 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:18:14 has no hits.

BO13376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:55 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RB 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:28 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RB 197..648 9..460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:00 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 164..607 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:55 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RB 197..648 9..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:34 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-1A-RA 164..607 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:34 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18274938..18275141 17..220 100 -> Plus
3R 18281694..18281933 221..462 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:00 Download gff for BO13376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14107416..14107655 221..462 99   Plus
arm_3R 14100660..14100863 17..220 100 -> Plus

BO13376.pep Sequence

Translation from 16 to 478

> BO13376.pep
MPKNKGKGGKNRRRGKNENEFEKRELIFKEDQQEYAQVTKMLGNGRLEAM
CFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDYQDSKADVILKYTPDEA
RNLKTYGEFPESVRINETVTFVEDGFDEDIEFGDEISSEDDADSVDNIAS
FLDH

BO13376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-1A-PC 148 CG8053-PC 1..148 1..148 777 100 Plus
eIF-1A-PB 148 CG8053-PB 1..148 1..148 777 100 Plus
eIF-1A-PA 148 CG8053-PA 1..148 1..148 777 100 Plus