Clone BO13381 Report

Search the DGRC for BO13381

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG11753-RA
Protein status:BO13381.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO13381.5prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO13381.5prime
GAAGTTATCAGTCGACATGAAGGGCGGCACCTTTCGCAACACGCAGTGGG
ATCCCACGCTGCTGTCCTCACAGATTGTGTCCATGCAGTTCTGCGTGTAC
TTCACCCTTGGCCTACTCGTCTTCGTGGCCAACAAGTTGTCCGGGGACAA
CTATAGTCTGGATCACTTGTTCGAATACCATGAGATCCACATCTACGACA
TGGGTGGCCGCCTGGTGATCTGCGCATTTGTTTTAAATGCGTTCTTAGCC
TCCCTGGCACTGTGGTGCATTGTGAGAAGAGCCAAGCTCTGTCTGGACTT
TAGTTGCACCTTCCACGTGCTGCATTTGCTGATCTGCTGGTGGTACAACC
GCTCCTTTCCCGCGAACGCATCGTGGTGGCTACTGAATGTCATCACCGGC
ACAATAATGTGCATAGGCGGCGAGTTTCTCTGCCTGCAGACCGAGATGAA
GGAGATCCCAGTGGGCTATGCGGCCCTCAATCAAAAGTCGGACGTCGCAA
GCTTTCTAGACC

BO13381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11753-PA 483 CG11753-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11753-RA 699 CG11753-RA 110..590 16..496 2405 100 Plus
CG11753-RC 801 CG11753-RC 215..692 16..496 2350 99.4 Plus
CG11753-RB 696 CG11753-RB 110..587 16..496 2350 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8653544..8653738 302..496 975 100 Plus
3R 32079331 3R 8653120..8653286 16..182 835 100 Plus
3R 32079331 3R 8653356..8653477 182..303 610 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:08:46 has no hits.

BO13381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:55 Download gff for BO13381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11753-PA 1..483 17..499 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:11 Download gff for BO13381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11753-PA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:46 Download gff for BO13381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 103..595 10..503 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:37 Download gff for BO13381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 103..595 10..503 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:37 Download gff for BO13381.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8653113..8653285 10..181 98 -> Plus
3R 8653356..8653477 182..303 100 -> Plus
3R 8653546..8653743 304..503 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:46 Download gff for BO13381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4478835..4479007 10..181 98 -> Plus
arm_3R 4479078..4479199 182..303 100 -> Plus
arm_3R 4479268..4479465 304..503 98   Plus

BO13381.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ632770

> BO13381.complete
GAAGTTATCAGTCGACATGAAGGGCGGCACCTTTCGCAACACGCAGTGGG
ATCCCACGCTGCTGTCCTCACAGATTGTGTCCATGCAGTTCTGCGTGTAC
TTCACCCTTGGCCTACTCGTCTTCGTGGCCAACAAGTTGTCCGGGGACAA
CTATAGTCTGGATCACTTGTTCGAATACCATGAGATCCACATCTACGACA
TGGGTGGCCGCCTGGTGATCTGCGCATTTGTTTTAAATGCGTTCTTAGCC
TCCCTGGCACTGTGGTGCATTGTGAGAAGAGCCAAGCTCTGTCTGGACTT
TAGTTGCACCTTCCACGTGCTGCATTTGCTGATCTGCTGGTGGTACAACC
GCTCCTTTCCCGCGAACGCATCGTGGTGGCTACTGAATGTCATCACCGGC
ACAATAATGTGCATAGGCGGCGAGTTTCTCTGCCTGCAGACCGAGATGAA
GGAGATCCCAGTGGGCTATGCGGCCCTCAATCAAAAGTCGGACGTCGCAA
GCTTTCTAGACCAT

BO13381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11753-RA 483 CG11753-PA 1..480 17..496 2400 100 Plus
CG11753-RC 480 CG11753-PC 1..477 17..496 2320 99.4 Plus
CG11753-RB 480 CG11753-PB 1..477 17..496 2320 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11753-RA 699 CG11753-RA 110..590 16..496 2405 100 Plus
CG11753-RC 801 CG11753-RC 215..692 16..496 2325 99.4 Plus
CG11753-RB 696 CG11753-RB 110..587 16..496 2325 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8653544..8653738 302..496 975 100 Plus
3R 32079331 3R 8653120..8653286 16..182 835 100 Plus
3R 32079331 3R 8653356..8653477 182..303 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:14:33 has no hits.

BO13381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:25 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:47 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 98..590 10..503 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:39 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 111..590 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:25 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 98..590 10..503 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:28 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
CG11753-RA 111..590 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:28 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8653356..8653477 182..303 100 -> Plus
3R 8653546..8653738 304..498 98   Plus
3R 8653121..8653285 17..181 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:39 Download gff for BO13381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4479268..4479460 304..498 98   Plus
arm_3R 4478843..4479007 17..181 100 -> Plus
arm_3R 4479078..4479199 182..303 100 -> Plus

BO13381.pep Sequence

Translation from 16 to 514

> BO13381.pep
MKGGTFRNTQWDPTLLSSQIVSMQFCVYFTLGLLVFVANKLSGDNYSLDH
LFEYHEIHIYDMGGRLVICAFVLNAFLASLALWCIVRRAKLCLDFSCTFH
VLHLLICWWYNRSFPANASWWLLNVITGTIMCIGGEFLCLQTEMKEIPVG
YAALNQKSDVASFLDH

BO13381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11753-PA 160 CG11753-PA 1..160 1..160 872 100 Plus
CG11753-PC 159 CG11753-PC 1..159 1..160 855 99.4 Plus
CG11753-PB 159 CG11753-PB 1..159 1..160 855 99.4 Plus