Clone Sequence Records
BO13381.5prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO13381.5prime
GAAGTTATCAGTCGACATGAAGGGCGGCACCTTTCGCAACACGCAGTGGG
ATCCCACGCTGCTGTCCTCACAGATTGTGTCCATGCAGTTCTGCGTGTAC
TTCACCCTTGGCCTACTCGTCTTCGTGGCCAACAAGTTGTCCGGGGACAA
CTATAGTCTGGATCACTTGTTCGAATACCATGAGATCCACATCTACGACA
TGGGTGGCCGCCTGGTGATCTGCGCATTTGTTTTAAATGCGTTCTTAGCC
TCCCTGGCACTGTGGTGCATTGTGAGAAGAGCCAAGCTCTGTCTGGACTT
TAGTTGCACCTTCCACGTGCTGCATTTGCTGATCTGCTGGTGGTACAACC
GCTCCTTTCCCGCGAACGCATCGTGGTGGCTACTGAATGTCATCACCGGC
ACAATAATGTGCATAGGCGGCGAGTTTCTCTGCCTGCAGACCGAGATGAA
GGAGATCCCAGTGGGCTATGCGGCCCTCAATCAAAAGTCGGACGTCGCAA
GCTTTCTAGACC
BO13381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11753-PA | 483 | CG11753-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11753-RA | 699 | CG11753-RA | 110..590 | 16..496 | 2405 | 100 | Plus |
CG11753-RC | 801 | CG11753-RC | 215..692 | 16..496 | 2350 | 99.4 | Plus |
CG11753-RB | 696 | CG11753-RB | 110..587 | 16..496 | 2350 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8653544..8653738 | 302..496 | 975 | 100 | Plus |
3R | 32079331 | 3R | 8653120..8653286 | 16..182 | 835 | 100 | Plus |
3R | 32079331 | 3R | 8653356..8653477 | 182..303 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:08:46 has no hits.
BO13381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:55 Download gff for
BO13381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-PA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:11 Download gff for
BO13381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-PA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:35:46 Download gff for
BO13381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 103..595 | 10..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:37 Download gff for
BO13381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 103..595 | 10..503 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:37 Download gff for
BO13381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8653113..8653285 | 10..181 | 98 | -> | Plus |
3R | 8653356..8653477 | 182..303 | 100 | -> | Plus |
3R | 8653546..8653743 | 304..503 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:35:46 Download gff for
BO13381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4478835..4479007 | 10..181 | 98 | -> | Plus |
arm_3R | 4479078..4479199 | 182..303 | 100 | -> | Plus |
arm_3R | 4479268..4479465 | 304..503 | 98 | | Plus |
BO13381.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ632770
> BO13381.complete
GAAGTTATCAGTCGACATGAAGGGCGGCACCTTTCGCAACACGCAGTGGG
ATCCCACGCTGCTGTCCTCACAGATTGTGTCCATGCAGTTCTGCGTGTAC
TTCACCCTTGGCCTACTCGTCTTCGTGGCCAACAAGTTGTCCGGGGACAA
CTATAGTCTGGATCACTTGTTCGAATACCATGAGATCCACATCTACGACA
TGGGTGGCCGCCTGGTGATCTGCGCATTTGTTTTAAATGCGTTCTTAGCC
TCCCTGGCACTGTGGTGCATTGTGAGAAGAGCCAAGCTCTGTCTGGACTT
TAGTTGCACCTTCCACGTGCTGCATTTGCTGATCTGCTGGTGGTACAACC
GCTCCTTTCCCGCGAACGCATCGTGGTGGCTACTGAATGTCATCACCGGC
ACAATAATGTGCATAGGCGGCGAGTTTCTCTGCCTGCAGACCGAGATGAA
GGAGATCCCAGTGGGCTATGCGGCCCTCAATCAAAAGTCGGACGTCGCAA
GCTTTCTAGACCAT
BO13381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11753-RA | 483 | CG11753-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG11753-RC | 480 | CG11753-PC | 1..477 | 17..496 | 2320 | 99.4 | Plus |
CG11753-RB | 480 | CG11753-PB | 1..477 | 17..496 | 2320 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11753-RA | 699 | CG11753-RA | 110..590 | 16..496 | 2405 | 100 | Plus |
CG11753-RC | 801 | CG11753-RC | 215..692 | 16..496 | 2325 | 99.4 | Plus |
CG11753-RB | 696 | CG11753-RB | 110..587 | 16..496 | 2325 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8653544..8653738 | 302..496 | 975 | 100 | Plus |
3R | 32079331 | 3R | 8653120..8653286 | 16..182 | 835 | 100 | Plus |
3R | 32079331 | 3R | 8653356..8653477 | 182..303 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:14:33 has no hits.
BO13381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:25 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:47 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 98..590 | 10..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:39 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 111..590 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:25 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 98..590 | 10..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:28 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11753-RA | 111..590 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:28 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8653356..8653477 | 182..303 | 100 | -> | Plus |
3R | 8653546..8653738 | 304..498 | 98 | | Plus |
3R | 8653121..8653285 | 17..181 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:39 Download gff for
BO13381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4479268..4479460 | 304..498 | 98 | | Plus |
arm_3R | 4478843..4479007 | 17..181 | 100 | -> | Plus |
arm_3R | 4479078..4479199 | 182..303 | 100 | -> | Plus |
BO13381.pep Sequence
Translation from 16 to 514
> BO13381.pep
MKGGTFRNTQWDPTLLSSQIVSMQFCVYFTLGLLVFVANKLSGDNYSLDH
LFEYHEIHIYDMGGRLVICAFVLNAFLASLALWCIVRRAKLCLDFSCTFH
VLHLLICWWYNRSFPANASWWLLNVITGTIMCIGGEFLCLQTEMKEIPVG
YAALNQKSDVASFLDH
BO13381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11753-PA | 160 | CG11753-PA | 1..160 | 1..160 | 872 | 100 | Plus |
CG11753-PC | 159 | CG11753-PC | 1..159 | 1..160 | 855 | 99.4 | Plus |
CG11753-PB | 159 | CG11753-PB | 1..159 | 1..160 | 855 | 99.4 | Plus |