Clone BO13382 Report

Search the DGRC for BO13382

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG9922-RA
Protein status:BO13382.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO13382.complete Sequence

406 bp assembled on 2007-10-17

GenBank Submission: FJ632771

> BO13382.complete
GAAGTTATCAGTCGACATGACGGAAGCAGCGGAAATCAACGGCAGAGAAG
AAGTGGAGGATGACGAGCAGGATAAAAAGCAAAAGAAATCCGATGTGAAA
CGACATGACGACGGCGCCGCAGATTTGGAACGTGTGACGGATTATGCCGA
GGAAAAGGAGATCTCTGCGGACAATATATCCAGCGCCGTGGAGCAGTTTG
GCAACCAGCGTAACAAGGAGAACGAACTGCGAGTAGCCAAAGAGAAGGAG
CTCCAGAAGGTCCAAGTCAAGAAGGAGGACATTGAACTGATTATGAACGA
GCTGCTGGTTAGCAAGGCGCATGCCGAGAAAGTGCTCCGCGAGCAGAGCG
GCGATGTGGTGGCCGCCTTGGAAGCCATCATCAGCAATGCAAGCTTTCTA
GACCAT

BO13382.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9922-RB 375 CG9922-PB 1..372 17..388 1860 100 Plus
CG9922-RA 375 CG9922-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9922-RB 1006 CG9922-RB 470..841 17..388 1860 100 Plus
CG9922-RA 626 CG9922-RA 90..461 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14035444..14035551 292..185 540 100 Minus
3R 32079331 3R 14035824..14035929 122..17 530 100 Minus
3R 32079331 3R 14035183..14035278 388..293 480 100 Minus
3R 32079331 3R 14035620..14035684 185..121 325 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:17:00 has no hits.

BO13382.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:52 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
CG9922-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:52 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
CG9922-RA 228..608 9..388 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:59 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
CG9922-RA 90..461 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:37 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
CG9922-RA 237..608 17..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:47 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
CG9922-RA 90..461 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:47 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14035180..14035278 293..390 97 <- Minus
3R 14035444..14035551 185..292 100 <- Minus
3R 14035621..14035682 123..184 100 <- Minus
3R 14035824..14035929 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:59 Download gff for BO13382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9861546..9861651 17..122 100   Minus
arm_3R 9860902..9861000 293..390 97 <- Minus
arm_3R 9861166..9861273 185..292 100 <- Minus
arm_3R 9861343..9861404 123..184 100 <- Minus

BO13382.pep Sequence

Translation from 16 to 406

> BO13382.pep
MTEAAEINGREEVEDDEQDKKQKKSDVKRHDDGAADLERVTDYAEEKEIS
ADNISSAVEQFGNQRNKENELRVAKEKELQKVQVKKEDIELIMNELLVSK
AHAEKVLREQSGDVVAALEAIISNASFLDH

BO13382.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9922-PB 124 CG9922-PB 1..124 1..124 605 100 Plus
CG9922-PA 124 CG9922-PA 1..124 1..124 605 100 Plus