Clone Sequence Records
BO13383.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO13383.5prime
GAAGTTATCCCTCGACATGAAGAGACTTAAAGCGTACCTAAAGGATGGCA
TCAATGTGGCGGCGGTAATGTGTCTGGGCGATACTATATCCCAGTTCTTT
TTTGATAAGAAATCGTTGGACGAATGGGATGCGGGGCGAACCCTCCGTTT
CGGCATCGTTGGACTGGTGTTCGTTGGCCCAACTTTGCGCCGGTGGTACC
ATTTTTTGGAGTCCCGGGTTCCCAAAACCTACTCGCCAATGCGGCGGGGC
GTTACCAAAATGCTGGTCGACCAGACCCTTTTTGCGCCACCCTTTACCAT
GGCCATGTCTTTTTTGGTGCCACTCTCCAACGGAGAGCCCATCGACCGAA
TCCGGCAGCGCATTCTTGATAGCTACCTATCTATATTGGTCCGCAACTAT
ATGCTCTGGCCGGCCGCACAGATGCTAAACTTCAGATTCGTGCCGCTGGG
CTACCAGGTGCTCTACGCCCAGTTCATCGCCCTCGTATGGAACTGCTACC
TCTCCATGATACTTAATAGCGCAAGCTTTCTAGACC
BO13383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11077-PA | 507 | CG11077-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11077-RA | 687 | CG11077-RA | 113..616 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1028746..1029249 | 520..17 | 2520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:05:26 has no hits.
BO13383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:56 Download gff for
BO13383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:13 Download gff for
BO13383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:49 Download gff for
BO13383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-RA | 113..616 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:22 Download gff for
BO13383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-RA | 113..616 | 17..520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:22 Download gff for
BO13383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1028746..1029249 | 17..520 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:49 Download gff for
BO13383.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1049372..1049875 | 17..520 | 100 | | Minus |
BO13383.complete Sequence
539 bp assembled on 2008-08-15
GenBank Submission: KX794120
> BO13383.complete
GAAGTTATCAAGTCGACATGAAGAGACTTAAAGCGTACCTAAAGGATGGC
ATCAATGTGGCGGCGGTAATGTGTCTGGGCGATACTATATCCCAGTTCTT
TTTTGATAAGAAATCGTTGGACGAATGGGATGCGGGGCGAACCCTCCGTT
TCGGCATCGTTGGACTGGTGTTCGTTGGCCCAACTTTGCGCCGGTGGTAC
CATTTTTTGGAGTCCCGGGTTCCCAAAACCTACTCGCCAATGCGGCGGGG
CGTTACCAAAATGCTGGTCGACCAGACCCTTTTTGCGCCACCCTTTACCA
TGGCCATGTCTTTTTTGGTGCCACTCTCCAACGGAGAGCCCATCGACCGA
ATCCGGCAGCGCATTCTTGATAGCTACCTATCTATATTGGTCCGCAACTA
TATGCTCTGGCCGGCCGCACAGATGCTAAACTTCAGATTCGTGCCGCTGG
GCTACCAGGTGCTCTACGCCCAGTTCATCGCCCTCGTATGGAACTGCTAC
CTCTCCATGATACTTAATAGCGCAAGCTTTCTAGACCAT
BO13383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11077-RA | 507 | CG11077-PA | 1..504 | 18..521 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11077-RA | 687 | CG11077-RA | 113..616 | 18..521 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1028746..1029249 | 521..18 | 2520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:58 has no hits.
BO13383.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:34 Download gff for
BO13383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-RA | 107..614 | 10..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:17 Download gff for
BO13383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-RA | 112..616 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:58 Download gff for
BO13383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-RA | 110..614 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:42 Download gff for
BO13383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11077-RA | 112..616 | 17..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:42 Download gff for
BO13383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1028744..1029249 | 17..523 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:17 Download gff for
BO13383.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1049370..1049875 | 17..523 | 99 | | Minus |
BO13383.pep Sequence
Translation from 17 to 539
> BO13383.pep
MKRLKAYLKDGINVAAVMCLGDTISQFFFDKKSLDEWDAGRTLRFGIVGL
VFVGPTLRRWYHFLESRVPKTYSPMRRGVTKMLVDQTLFAPPFTMAMSFL
VPLSNGEPIDRIRQRILDSYLSILVRNYMLWPAAQMLNFRFVPLGYQVLY
AQFIALVWNCYLSMILNSASFLDH
BO13383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11077-PA | 168 | CG11077-PA | 1..168 | 1..168 | 880 | 100 | Plus |
CG2022-PB | 193 | CG2022-PB | 15..170 | 8..165 | 199 | 25.9 | Plus |
CG5906-PA | 196 | CG5906-PA | 33..184 | 11..165 | 172 | 30.6 | Plus |
CG14777-PF | 196 | CG14777-PF | 33..178 | 16..163 | 170 | 27 | Plus |
CG14777-PC | 196 | CG14777-PC | 33..178 | 16..163 | 170 | 27 | Plus |