Clone BO13383 Report

Search the DGRC for BO13383

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG11077-RA
Protein status:BO13383.pep: Inserted from web
Sequenced Size:539

Clone Sequence Records

BO13383.5prime Sequence

536 bp (535 high quality bases) assembled on 2006-05-08

> BO13383.5prime
GAAGTTATCCCTCGACATGAAGAGACTTAAAGCGTACCTAAAGGATGGCA
TCAATGTGGCGGCGGTAATGTGTCTGGGCGATACTATATCCCAGTTCTTT
TTTGATAAGAAATCGTTGGACGAATGGGATGCGGGGCGAACCCTCCGTTT
CGGCATCGTTGGACTGGTGTTCGTTGGCCCAACTTTGCGCCGGTGGTACC
ATTTTTTGGAGTCCCGGGTTCCCAAAACCTACTCGCCAATGCGGCGGGGC
GTTACCAAAATGCTGGTCGACCAGACCCTTTTTGCGCCACCCTTTACCAT
GGCCATGTCTTTTTTGGTGCCACTCTCCAACGGAGAGCCCATCGACCGAA
TCCGGCAGCGCATTCTTGATAGCTACCTATCTATATTGGTCCGCAACTAT
ATGCTCTGGCCGGCCGCACAGATGCTAAACTTCAGATTCGTGCCGCTGGG
CTACCAGGTGCTCTACGCCCAGTTCATCGCCCTCGTATGGAACTGCTACC
TCTCCATGATACTTAATAGCGCAAGCTTTCTAGACC

BO13383.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11077-PA 507 CG11077-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11077-RA 687 CG11077-RA 113..616 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1028746..1029249 520..17 2520 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:05:26 has no hits.

BO13383.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:56 Download gff for BO13383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11077-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:13 Download gff for BO13383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11077-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:49 Download gff for BO13383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11077-RA 113..616 17..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:22 Download gff for BO13383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11077-RA 113..616 17..520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:22 Download gff for BO13383.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1028746..1029249 17..520 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:49 Download gff for BO13383.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1049372..1049875 17..520 100   Minus

BO13383.complete Sequence

539 bp assembled on 2008-08-15

GenBank Submission: KX794120

> BO13383.complete
GAAGTTATCAAGTCGACATGAAGAGACTTAAAGCGTACCTAAAGGATGGC
ATCAATGTGGCGGCGGTAATGTGTCTGGGCGATACTATATCCCAGTTCTT
TTTTGATAAGAAATCGTTGGACGAATGGGATGCGGGGCGAACCCTCCGTT
TCGGCATCGTTGGACTGGTGTTCGTTGGCCCAACTTTGCGCCGGTGGTAC
CATTTTTTGGAGTCCCGGGTTCCCAAAACCTACTCGCCAATGCGGCGGGG
CGTTACCAAAATGCTGGTCGACCAGACCCTTTTTGCGCCACCCTTTACCA
TGGCCATGTCTTTTTTGGTGCCACTCTCCAACGGAGAGCCCATCGACCGA
ATCCGGCAGCGCATTCTTGATAGCTACCTATCTATATTGGTCCGCAACTA
TATGCTCTGGCCGGCCGCACAGATGCTAAACTTCAGATTCGTGCCGCTGG
GCTACCAGGTGCTCTACGCCCAGTTCATCGCCCTCGTATGGAACTGCTAC
CTCTCCATGATACTTAATAGCGCAAGCTTTCTAGACCAT

BO13383.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11077-RA 507 CG11077-PA 1..504 18..521 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11077-RA 687 CG11077-RA 113..616 18..521 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1028746..1029249 521..18 2520 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:06:58 has no hits.

BO13383.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:34 Download gff for BO13383.complete
Subject Subject Range Query Range Percent Splice Strand
CG11077-RA 107..614 10..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:17 Download gff for BO13383.complete
Subject Subject Range Query Range Percent Splice Strand
CG11077-RA 112..616 17..523 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:58 Download gff for BO13383.complete
Subject Subject Range Query Range Percent Splice Strand
CG11077-RA 110..614 17..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:42 Download gff for BO13383.complete
Subject Subject Range Query Range Percent Splice Strand
CG11077-RA 112..616 17..523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:42 Download gff for BO13383.complete
Subject Subject Range Query Range Percent Splice Strand
4 1028744..1029249 17..523 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:17 Download gff for BO13383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1049370..1049875 17..523 99   Minus

BO13383.pep Sequence

Translation from 17 to 539

> BO13383.pep
MKRLKAYLKDGINVAAVMCLGDTISQFFFDKKSLDEWDAGRTLRFGIVGL
VFVGPTLRRWYHFLESRVPKTYSPMRRGVTKMLVDQTLFAPPFTMAMSFL
VPLSNGEPIDRIRQRILDSYLSILVRNYMLWPAAQMLNFRFVPLGYQVLY
AQFIALVWNCYLSMILNSASFLDH

BO13383.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11077-PA 168 CG11077-PA 1..168 1..168 880 100 Plus
CG2022-PB 193 CG2022-PB 15..170 8..165 199 25.9 Plus
CG5906-PA 196 CG5906-PA 33..184 11..165 172 30.6 Plus
CG14777-PF 196 CG14777-PF 33..178 16..163 170 27 Plus
CG14777-PC 196 CG14777-PC 33..178 16..163 170 27 Plus