Clone Sequence Records
BO13385.complete Sequence
1031 bp assembled on 2008-09-03
GenBank Submission: KX796421
> BO13385.complete
GAAGTTATCAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATA
CTGCTGGCCGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGG
CACTTTGGCCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCA
AGCAGACGGAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCC
AAGCTGGCCGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTC
CCAGCGCCTAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGC
AGGAGATTGACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCG
GCCATTATCAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAG
CGCTGGTGGAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCA
TCGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATG
CCGAATGCAGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAAC
TCTGGAGGAGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTAC
GCGCCCGTGATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGC
ATCAAAGGTCAAACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAA
GACGGAGGAGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGATGATCA
CTCTTGATAAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTCACAACC
GATCCAGAGATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAAGCTTTC
TGATCTGGATGGGGAGACTCGCAGTATGGTGGAGAAGATGATGTATGATC
AGCGACAGAAGGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAAAAACAG
GACATACTTGAGAAATTTAAGCAACAGCATCCTGAGATGGACTTCTCCAA
GTGTAAATTCAATGCAAGCTTTCTAGACCAT
BO13385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudC-RB | 999 | CG9710-PB | 1..996 | 18..1013 | 4980 | 100 | Plus |
nudC-RA | 999 | CG9710-PA | 1..996 | 18..1013 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudC-RB | 1622 | CG9710-RB | 510..1506 | 17..1013 | 4985 | 100 | Plus |
nudC-RA | 1238 | CG9710-RA | 126..1122 | 17..1013 | 4985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16818905..16819304 | 565..964 | 2000 | 100 | Plus |
3L | 28110227 | 3L | 16808693..16808978 | 91..376 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16809168..16809357 | 377..566 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16808544..16808619 | 17..92 | 380 | 100 | Plus |
3L | 28110227 | 3L | 16819368..16819416 | 965..1013 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:32:50 has no hits.
BO13385.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:38 Download gff for
BO13385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 123..1125 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:33 Download gff for
BO13385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 126..1122 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:40 Download gff for
BO13385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 123..1119 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:47 Download gff for
BO13385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 126..1122 | 17..1015 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:47 Download gff for
BO13385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16808544..16808619 | 17..92 | 100 | -> | Plus |
3L | 16808695..16808978 | 93..376 | 100 | -> | Plus |
3L | 16809168..16809357 | 377..566 | 100 | -> | Plus |
3L | 16818907..16819304 | 567..964 | 100 | -> | Plus |
3L | 16819368..16819416 | 965..1015 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:33 Download gff for
BO13385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16801644..16801719 | 17..92 | 100 | -> | Plus |
arm_3L | 16801795..16802078 | 93..376 | 100 | -> | Plus |
arm_3L | 16802268..16802457 | 377..566 | 100 | -> | Plus |
arm_3L | 16812007..16812404 | 567..964 | 100 | -> | Plus |
arm_3L | 16812468..16812516 | 965..1015 | 96 | | Plus |
BO13385.3prime Sequence
844 bp (735 high quality bases) assembled on 2006-05-08
> BO13385.3prime
ATGGTCTAGAAAGCTTGCATCGAATTTACACTTGGAGAAGTCCATCTCAG
GATGCTGTTGCTTAAATTTCTCAAGTATGTCCTGTTTTTTGCGATCCTCG
CTGGTGGGAAGACCCAACTCCTTCTGTCGCTGATCATACATCATCTTCTC
CACCATACTGCGAGTCTCCCCATCCAGATCAGAAAGCTTGGAAGACTCTG
GATTGATCTTGCGCGTCGAGATCTCTGGATCGGTTGTGACCAGGCGGCTC
CACCAGTTCATCTTATTGATCTTATCAAGAGTGATCATCACGGTTTTGCT
GTCTTGCAAGACCCACACGGACTCCTCCGTCTTCACCTCGCCGCACAGTT
CGCCATCGATGATGGGCGTTTGACCTTTGATGCCCACCTTCAGCGACTTC
TTACCAATACTGATCACTAGATCACGGGCGCGTAGACCGAATGTTAAGTT
GAACGGAATCTTGAGCTCCACCTCCTCCAGAGTTTGGGTCCAGGTGTAGT
TTTCCAAGGTGCAGCCATTGCCTGCATTCGGCATCAGCTTACCCAGCTCA
CTCTTATCGGATTCATCGTCCACTTTCTCGATGGGCTTGGAGATGCCATC
TCGGTTCGAGGCAGATGGCTCTCCACCAGCGCTATCCAGCAGCTGCTGGC
GTTTTTTGGTCTCCTCCTCCTTGATAATGGCCGCTGCCTCTTCGTCAGTG
ATATCACATATTTTATTATCGTCAATCTCCTGCTTGCGGGCCTTCCTTTC
GGCTCTCTCCTTCTCCGCCTTTAGGCGCTGGGAAGCTTCGCAAGCCTTTA
TCTTTTCGTAGTTTTCATTTACGGCCAGCTTGGACTCCTTGTTG
BO13385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9710-PA | 999 | nudC-RA | 171..993 | 844..22 | 4065 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudC-RB | 1622 | CG9710-RB | 681..1503 | 844..22 | 4085 | 99.8 | Minus |
nudC-RA | 1238 | CG9710-RA | 297..1119 | 844..22 | 4085 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16818905..16819304 | 467..68 | 2000 | 100 | Minus |
3L | 28110227 | 3L | 16809168..16809357 | 655..466 | 950 | 100 | Minus |
3L | 28110227 | 3L | 16808790..16808978 | 844..656 | 915 | 98.9 | Minus |
3L | 28110227 | 3L | 16819368..16819413 | 67..22 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:18:04 has no hits.
BO13385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:58 Download gff for
BO13385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-PA | 171..999 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:15 Download gff for
BO13385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9710-PA | 171..999 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:13 Download gff for
BO13385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 297..1128 | 12..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:42 Download gff for
BO13385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 297..1128 | 12..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:42 Download gff for
BO13385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16808790..16808978 | 656..844 | 98 | -> | Minus |
3L | 16809168..16809357 | 466..655 | 100 | -> | Minus |
3L | 16818907..16819304 | 68..465 | 100 | -> | Minus |
3L | 16819368..16819422 | 12..67 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:13 Download gff for
BO13385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16801890..16802078 | 656..844 | 98 | -> | Minus |
arm_3L | 16802268..16802457 | 466..655 | 100 | -> | Minus |
arm_3L | 16812007..16812404 | 68..465 | 100 | -> | Minus |
arm_3L | 16812468..16812522 | 12..67 | 92 | | Minus |
BO13385.5prime Sequence
740 bp (694 high quality bases) assembled on 2006-05-08
> BO13385.5prime
GAAGTTATCAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATA
CTGCTGGCCGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGG
CACTTTGGCCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCA
AGCAGACGGAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCC
AAGCTGGCCGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTC
CCAGCGCCTAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGC
AGGAGATTGACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCG
GCCATTATCAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAG
CGCTGGTGGAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCA
TCGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATG
CCGAATGCAGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAAC
TCTGGAGGAGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTAC
GCGCCCGTGATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGC
ATCAAAGGTCAAACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAA
GACGGAGGAGTCCGTGTGGGTCTTGCAAGACAGCAAAACC
BO13385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9710-PA | 999 | nudC-RA | 1..723 | 18..740 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudC-RB | 1622 | CG9710-RB | 510..1233 | 17..740 | 3620 | 100 | Plus |
nudC-RA | 1238 | CG9710-RA | 126..849 | 17..740 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16808693..16808978 | 91..376 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16809168..16809357 | 377..566 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16818905..16819080 | 565..740 | 880 | 100 | Plus |
3L | 28110227 | 3L | 16808544..16808619 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:40:25 has no hits.
BO13385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:59 Download gff for
BO13385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-PA | 1..723 | 18..740 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:16 Download gff for
BO13385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9710-PA | 1..723 | 18..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:51 Download gff for
BO13385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 126..849 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:23 Download gff for
BO13385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudC-RA | 126..849 | 17..740 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:23 Download gff for
BO13385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16818907..16819080 | 567..740 | 100 | | Plus |
3L | 16808544..16808619 | 17..92 | 100 | -> | Plus |
3L | 16808695..16808978 | 93..376 | 100 | -> | Plus |
3L | 16809168..16809357 | 377..566 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:51 Download gff for
BO13385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16801644..16801719 | 17..92 | 100 | -> | Plus |
arm_3L | 16801795..16802078 | 93..376 | 100 | -> | Plus |
arm_3L | 16802268..16802457 | 377..566 | 100 | -> | Plus |
arm_3L | 16812007..16812180 | 567..740 | 100 | | Plus |
BO13385.pep Sequence
Translation from 17 to 1031
> BO13385.pep
MAAEEGKFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFFTGAKQTEWE
KLLLDVFNKESKLAVTENYEKIKAREASQRLKAEKERAERKARKQEIDDN
KICDITDEEAAAIIKEEETKKRQQLLDSAGGEPSASNRDGISKPIEKVDD
ESDKSELGKLMPNAGNGCTLENYTWTQTLEEVELKIPFNLTFGLRARDLV
ISIGKKSLKVGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKIN
KMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKEL
GLPTSEDRKKQDILEKFKQQHPEMDFSKCKFNASFLDH
BO13385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudC-PB | 332 | CG9710-PB | 1..332 | 1..332 | 1703 | 100 | Plus |
nudC-PA | 332 | CG9710-PA | 1..332 | 1..332 | 1703 | 100 | Plus |
CG31251-PA | 306 | CG31251-PA | 23..288 | 26..333 | 197 | 26 | Plus |