Clone BO13385 Report

Search the DGRC for BO13385

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptnudC-RA
Protein status:BO13385.pep: Inserted from web
Sequenced Size:1031

Clone Sequence Records

BO13385.complete Sequence

1031 bp assembled on 2008-09-03

GenBank Submission: KX796421

> BO13385.complete
GAAGTTATCAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATA
CTGCTGGCCGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGG
CACTTTGGCCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCA
AGCAGACGGAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCC
AAGCTGGCCGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTC
CCAGCGCCTAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGC
AGGAGATTGACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCG
GCCATTATCAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAG
CGCTGGTGGAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCA
TCGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATG
CCGAATGCAGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAAC
TCTGGAGGAGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTAC
GCGCCCGTGATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGC
ATCAAAGGTCAAACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAA
GACGGAGGAGTCCGTGTGGGTCTTGCAAGACAGCAAAACCGTGATGATCA
CTCTTGATAAGATCAATAAGATGAACTGGTGGAGCCGCCTGGTCACAACC
GATCCAGAGATCTCGACGCGCAAGATCAATCCAGAGTCTTCCAAGCTTTC
TGATCTGGATGGGGAGACTCGCAGTATGGTGGAGAAGATGATGTATGATC
AGCGACAGAAGGAGTTGGGTCTTCCCACCAGCGAGGATCGCAAAAAACAG
GACATACTTGAGAAATTTAAGCAACAGCATCCTGAGATGGACTTCTCCAA
GTGTAAATTCAATGCAAGCTTTCTAGACCAT

BO13385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
nudC-RB 999 CG9710-PB 1..996 18..1013 4980 100 Plus
nudC-RA 999 CG9710-PA 1..996 18..1013 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
nudC-RB 1622 CG9710-RB 510..1506 17..1013 4985 100 Plus
nudC-RA 1238 CG9710-RA 126..1122 17..1013 4985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16818905..16819304 565..964 2000 100 Plus
3L 28110227 3L 16808693..16808978 91..376 1430 100 Plus
3L 28110227 3L 16809168..16809357 377..566 950 100 Plus
3L 28110227 3L 16808544..16808619 17..92 380 100 Plus
3L 28110227 3L 16819368..16819416 965..1013 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:32:50 has no hits.

BO13385.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:38 Download gff for BO13385.complete
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 123..1125 17..1020 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:33 Download gff for BO13385.complete
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 126..1122 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:40 Download gff for BO13385.complete
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 123..1119 17..1015 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:47 Download gff for BO13385.complete
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 126..1122 17..1015 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:47 Download gff for BO13385.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16808544..16808619 17..92 100 -> Plus
3L 16808695..16808978 93..376 100 -> Plus
3L 16809168..16809357 377..566 100 -> Plus
3L 16818907..16819304 567..964 100 -> Plus
3L 16819368..16819416 965..1015 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:33 Download gff for BO13385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16801644..16801719 17..92 100 -> Plus
arm_3L 16801795..16802078 93..376 100 -> Plus
arm_3L 16802268..16802457 377..566 100 -> Plus
arm_3L 16812007..16812404 567..964 100 -> Plus
arm_3L 16812468..16812516 965..1015 96   Plus

BO13385.3prime Sequence

844 bp (735 high quality bases) assembled on 2006-05-08

> BO13385.3prime
ATGGTCTAGAAAGCTTGCATCGAATTTACACTTGGAGAAGTCCATCTCAG
GATGCTGTTGCTTAAATTTCTCAAGTATGTCCTGTTTTTTGCGATCCTCG
CTGGTGGGAAGACCCAACTCCTTCTGTCGCTGATCATACATCATCTTCTC
CACCATACTGCGAGTCTCCCCATCCAGATCAGAAAGCTTGGAAGACTCTG
GATTGATCTTGCGCGTCGAGATCTCTGGATCGGTTGTGACCAGGCGGCTC
CACCAGTTCATCTTATTGATCTTATCAAGAGTGATCATCACGGTTTTGCT
GTCTTGCAAGACCCACACGGACTCCTCCGTCTTCACCTCGCCGCACAGTT
CGCCATCGATGATGGGCGTTTGACCTTTGATGCCCACCTTCAGCGACTTC
TTACCAATACTGATCACTAGATCACGGGCGCGTAGACCGAATGTTAAGTT
GAACGGAATCTTGAGCTCCACCTCCTCCAGAGTTTGGGTCCAGGTGTAGT
TTTCCAAGGTGCAGCCATTGCCTGCATTCGGCATCAGCTTACCCAGCTCA
CTCTTATCGGATTCATCGTCCACTTTCTCGATGGGCTTGGAGATGCCATC
TCGGTTCGAGGCAGATGGCTCTCCACCAGCGCTATCCAGCAGCTGCTGGC
GTTTTTTGGTCTCCTCCTCCTTGATAATGGCCGCTGCCTCTTCGTCAGTG
ATATCACATATTTTATTATCGTCAATCTCCTGCTTGCGGGCCTTCCTTTC
GGCTCTCTCCTTCTCCGCCTTTAGGCGCTGGGAAGCTTCGCAAGCCTTTA
TCTTTTCGTAGTTTTCATTTACGGCCAGCTTGGACTCCTTGTTG

BO13385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9710-PA 999 nudC-RA 171..993 844..22 4065 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
nudC-RB 1622 CG9710-RB 681..1503 844..22 4085 99.8 Minus
nudC-RA 1238 CG9710-RA 297..1119 844..22 4085 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16818905..16819304 467..68 2000 100 Minus
3L 28110227 3L 16809168..16809357 655..466 950 100 Minus
3L 28110227 3L 16808790..16808978 844..656 915 98.9 Minus
3L 28110227 3L 16819368..16819413 67..22 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:18:04 has no hits.

BO13385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:58 Download gff for BO13385.3prime
Subject Subject Range Query Range Percent Splice Strand
nudC-PA 171..999 15..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:15 Download gff for BO13385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9710-PA 171..999 15..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:13 Download gff for BO13385.3prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 297..1128 12..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:42 Download gff for BO13385.3prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 297..1128 12..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:42 Download gff for BO13385.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16808790..16808978 656..844 98 -> Minus
3L 16809168..16809357 466..655 100 -> Minus
3L 16818907..16819304 68..465 100 -> Minus
3L 16819368..16819422 12..67 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:13 Download gff for BO13385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16801890..16802078 656..844 98 -> Minus
arm_3L 16802268..16802457 466..655 100 -> Minus
arm_3L 16812007..16812404 68..465 100 -> Minus
arm_3L 16812468..16812522 12..67 92   Minus

BO13385.5prime Sequence

740 bp (694 high quality bases) assembled on 2006-05-08

> BO13385.5prime
GAAGTTATCAGTCGGACATGGCTGCTGAGGAGGGAAAGTTTGACAACATA
CTGCTGGCCGTGGCCGAGAAGCATCACGGTGGCGTGCCCGAGTTCCTTGG
CACTTTGGCCAGTTTTCTGCGCCGCAAGACCGACTTCTTCACGGGAGCCA
AGCAGACGGAGTGGGAGAAGCTGCTGCTGGATGTCTTCAACAAGGAGTCC
AAGCTGGCCGTAACTGAAAACTACGAAAAGATAAAGGCTCGCGAAGCTTC
CCAGCGCCTAAAGGCGGAGAAGGAGAGAGCCGAAAGGAAGGCCCGCAAGC
AGGAGATTGACGATAATAAAATATGTGATATCACTGACGAAGAGGCAGCG
GCCATTATCAAGGAGGAGGAGACCAAAAAACGCCAGCAGCTGCTGGATAG
CGCTGGTGGAGAGCCATCTGCCTCGAACCGAGATGGCATCTCCAAGCCCA
TCGAGAAAGTGGACGATGAATCCGATAAGAGTGAGCTGGGTAAGCTGATG
CCGAATGCAGGCAATGGCTGCACCTTGGAAAACTACACCTGGACCCAAAC
TCTGGAGGAGGTGGAGCTCAAGATTCCGTTCAACTTAACATTCGGTCTAC
GCGCCCGTGATCTAGTGATCAGTATTGGTAAGAAGTCGCTGAAGGTGGGC
ATCAAAGGTCAAACGCCCATCATCGATGGCGAACTGTGCGGCGAGGTGAA
GACGGAGGAGTCCGTGTGGGTCTTGCAAGACAGCAAAACC

BO13385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9710-PA 999 nudC-RA 1..723 18..740 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
nudC-RB 1622 CG9710-RB 510..1233 17..740 3620 100 Plus
nudC-RA 1238 CG9710-RA 126..849 17..740 3620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16808693..16808978 91..376 1430 100 Plus
3L 28110227 3L 16809168..16809357 377..566 950 100 Plus
3L 28110227 3L 16818905..16819080 565..740 880 100 Plus
3L 28110227 3L 16808544..16808619 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:40:25 has no hits.

BO13385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:59 Download gff for BO13385.5prime
Subject Subject Range Query Range Percent Splice Strand
nudC-PA 1..723 18..740 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:16 Download gff for BO13385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9710-PA 1..723 18..740 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:51 Download gff for BO13385.5prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 126..849 17..740 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:23 Download gff for BO13385.5prime
Subject Subject Range Query Range Percent Splice Strand
nudC-RA 126..849 17..740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:23 Download gff for BO13385.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16818907..16819080 567..740 100   Plus
3L 16808544..16808619 17..92 100 -> Plus
3L 16808695..16808978 93..376 100 -> Plus
3L 16809168..16809357 377..566 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:51 Download gff for BO13385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16801644..16801719 17..92 100 -> Plus
arm_3L 16801795..16802078 93..376 100 -> Plus
arm_3L 16802268..16802457 377..566 100 -> Plus
arm_3L 16812007..16812180 567..740 100   Plus

BO13385.pep Sequence

Translation from 17 to 1031

> BO13385.pep
MAAEEGKFDNILLAVAEKHHGGVPEFLGTLASFLRRKTDFFTGAKQTEWE
KLLLDVFNKESKLAVTENYEKIKAREASQRLKAEKERAERKARKQEIDDN
KICDITDEEAAAIIKEEETKKRQQLLDSAGGEPSASNRDGISKPIEKVDD
ESDKSELGKLMPNAGNGCTLENYTWTQTLEEVELKIPFNLTFGLRARDLV
ISIGKKSLKVGIKGQTPIIDGELCGEVKTEESVWVLQDSKTVMITLDKIN
KMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKEL
GLPTSEDRKKQDILEKFKQQHPEMDFSKCKFNASFLDH

BO13385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
nudC-PB 332 CG9710-PB 1..332 1..332 1703 100 Plus
nudC-PA 332 CG9710-PA 1..332 1..332 1703 100 Plus
CG31251-PA 306 CG31251-PA 23..288 26..333 197 26 Plus