BO13392.complete Sequence
586 bp assembled on 2007-03-23
GenBank Submission: FJ632772
> BO13392.complete
GAAGTTATCAGTCGACATGTCTCTTGAGCGTGCCGTTCGTGCCAAGATTG
CCAGCAAGCGCAATCCCGAGATGGACAAGGAGGCCCAGGAGTGGATCGAG
GCCATCATTGCCGAGAAGTTCCCCGCCGGCCAGTCCTACGAGGATGTGCT
CAAGGACGGTCAGGTGCTGTGCAAACTGATCAACGTGCTGTCGCCCAATG
CCGTGCCCAAGGTCAACTCCTCGGGCGGCCAGTTCAAGTTCATGGAGAAC
ATCAACAACTTCCAGAAGGCCCTGAAGGAGTACGGTGTGCCCGACATCGA
TGTCTTCCAGACCGTCGATCTGTACGAGAAGAAGGATATTGCCAACGTTA
CCAACACCATCTTCGCTTTGGGCCGTGCCACCTACAAGCATGCCGACTTC
AAGGGTCCCTTCCTGGGCCCCAAGCCCGCCGATGAGTGCAAGCGCGATTT
CACCGAAGAGCAGCTGAAGGCTGGCCAGACCATTGTGGGTCTGCAGGCCG
GTTCCAACAAGGGAGCCACCCAGGCTGGCCAGAACCTCGGCGCTGGCCGC
AAGATCCTGCTCGGCAAGGCAAGCTTTCTAGACCAT
BO13392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-RC | 570 | CG4696-PC | 1..553 | 17..569 | 2765 | 100 | Plus |
| Mp20-RA | 555 | CG4696-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-RC | 693 | CG4696-RC | 72..626 | 15..569 | 2775 | 100 | Plus |
| Mp20-RA | 879 | CG4696-RA | 72..625 | 15..568 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13246915..13247249 | 45..379 | 1675 | 100 | Plus |
| 2R | 25286936 | 2R | 13247317..13247505 | 380..568 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:22:51 has no hits.
BO13392.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:20 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RB | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:30 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 85..648 | 7..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:11 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 74..625 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:20 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RB | 64..627 | 7..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:18 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RC | 74..626 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:18 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13246743..13246772 | 17..46 | 100 | -> | Plus |
| 2R | 13246917..13247249 | 47..379 | 100 | -> | Plus |
| 2R | 13247317..13247505 | 380..570 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:11 Download gff for
BO13392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9134248..9134277 | 17..46 | 100 | -> | Plus |
| arm_2R | 9134422..9134754 | 47..379 | 100 | -> | Plus |
| arm_2R | 9134822..9135010 | 380..570 | 98 | | Plus |
BO13392.pep Sequence
Translation from 16 to 586
> BO13392.pep
MSLERAVRAKIASKRNPEMDKEAQEWIEAIIAEKFPAGQSYEDVLKDGQV
LCKLINVLSPNAVPKVNSSGGQFKFMENINNFQKALKEYGVPDIDVFQTV
DLYEKKDIANVTNTIFALGRATYKHADFKGPFLGPKPADECKRDFTEEQL
KAGQTIVGLQAGSNKGATQAGQNLGAGRKILLGKASFLDH
BO13392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-PA | 184 | CG4696-PA | 1..184 | 1..184 | 945 | 100 | Plus |
| Mp20-PC | 189 | CG4696-PC | 1..184 | 1..184 | 945 | 100 | Plus |
| CG5023-PA | 169 | CG5023-PA | 4..159 | 15..171 | 441 | 53.5 | Plus |
| Chd64-PC | 175 | CG14996-PC | 3..173 | 8..178 | 364 | 43.7 | Plus |
| Chd64-PB | 188 | CG14996-PB | 18..186 | 10..178 | 362 | 44.2 | Plus |
