Clone Sequence Records
BO13394.3prime Sequence
769 bp (708 high quality bases) assembled on 2006-05-08
> BO13394.3prime
ATGGTCTAGAAAGCTTGCCCCCAATTTGACACGTTTGGCCTCATTGTATA
GCATATTATAATCGGCCTGGCCCGATCGCCGGGAGTTCATGTATTTGGCA
TGGGTCTGTCCATCCAGATAGAAACACTTGACAGCACGATCCTGGATCAT
CAAGTCGCGCCACTTAATCAAAGTGGGAAAACGTTCCGGACTCAATTCGA
ATTTTTGTTCAAAAGTGTATTTCAGAGAGTCAAAGCGCTCGCACCAGGGC
CACATCATGTAGTCAAGCATGCCTGGGCTGTCGCCACCAAAGAACTTGGT
ACAACGTCGCTTCAGTTCCTCCTCATAAACGACCAATCCGGCATAGTGAT
CGGTGTCAACCAGCTGCTCGGGATTGTCGTGCAGCAACAGGTAGTAGAAG
GCATTGATGAACTGTCCGAAACGTTCGATTAAAATCTTCTCCTGGGCTTT
TTTAAGCAGATCCTTGGGATACAATGGCACCTCCGGATACTTTTCGTCCA
AGTAGTCACAAATAATGAGCGACTCGATCAGCACAGGATTTCCCTGTTCC
TTGACCAGCTCCAGTGCCGGCACCTTTGTGGAGCTGCTCACCAGGGAGAA
CCACTCGGGTTTGTCGCGAAGATTGATGTAGATAGCGTGGTAGGGAATCT
TTTTGGCATCCAGGACCAGGTGCACACGGTGTGCATAGGGGCAAAAGCGC
ATCGAATACAGCTTTAAGATCCCATCATCCGGAAATACGGGGCTTTGGCG
AGCCAATAATTAAGTGCTG
BO13394.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6662-PA | 765 | CG6662-RA | 40..762 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO1-RA | 954 | CG6662-RA | 77..826 | 769..19 | 3715 | 99.7 | Minus |
se-RA | 825 | CG6781-RA | 108..218 | 711..601 | 195 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8524134..8524718 | 169..754 | 2880 | 99.8 | Plus |
3L | 28110227 | 3L | 8523953..8524075 | 47..169 | 615 | 100 | Plus |
3L | 28110227 | 3L | 8520715..8520825 | 711..601 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:10 has no hits.
BO13394.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:08 Download gff for
BO13394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-PA | 13..765 | 18..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:29 Download gff for
BO13394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-PA | 13..765 | 18..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:00 Download gff for
BO13394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO1-RA | 77..826 | 19..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:24 Download gff for
BO13394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO1-RA | 77..826 | 19..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:24 Download gff for
BO13394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8523870..8523897 | 19..46 | 100 | <- | Plus |
3L | 8523953..8524074 | 47..168 | 100 | <- | Plus |
3L | 8524134..8524724 | 169..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:00 Download gff for
BO13394.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8516970..8516997 | 19..46 | 100 | <- | Plus |
arm_3L | 8517053..8517174 | 47..168 | 100 | <- | Plus |
arm_3L | 8517234..8517824 | 169..760 | 99 | | Plus |
BO13394.5prime Sequence
718 bp (649 high quality bases) assembled on 2006-05-08
> BO13394.5prime
GAAGTTATCAGTCGACATGAGCAATACTCAGCACTTAACTATTGGCTCGC
CAAAGCCCGTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGC
TTTTGCCCCTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGAT
TCCCTACCACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCT
CCCTGGTGAGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAA
CAGGGAAATCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGA
CGAAAAGTATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAG
CCCAGGAGAAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTC
TACTACCTGTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCA
CTATGCCGGATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCA
AGTTCTTTGGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCC
TGGTGCGAGCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGA
ATTGAGTCCGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGA
TCCGGGATCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCC
AAATACATGAACTCCCCG
BO13394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6662-PA | 765 | CG6662-RA | 1..700 | 17..716 | 3475 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO1-RA | 954 | CG6662-RA | 65..764 | 17..716 | 3485 | 99.9 | Plus |
se-RA | 825 | CG6781-RA | 108..218 | 86..196 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8524134..8524718 | 628..44 | 2925 | 100 | Minus |
3L | 28110227 | 3L | 8523987..8524075 | 716..628 | 430 | 98.9 | Minus |
3L | 28110227 | 3L | 8520715..8520825 | 86..196 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:21:46 has no hits.
BO13394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:09 Download gff for
BO13394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-PA | 1..701 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:31 Download gff for
BO13394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-PA | 1..701 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:27 Download gff for
BO13394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO1-RA | 65..765 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:44 Download gff for
BO13394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO1-RA | 65..765 | 17..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:44 Download gff for
BO13394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8523985..8524074 | 629..718 | 97 | <- | Minus |
3L | 8524134..8524717 | 45..628 | 100 | <- | Minus |
3L | 8524775..8524802 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:27 Download gff for
BO13394.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8517085..8517174 | 629..718 | 97 | <- | Minus |
arm_3L | 8517234..8517817 | 45..628 | 100 | <- | Minus |
arm_3L | 8517875..8517902 | 17..44 | 100 | | Minus |
BO13394.complete Sequence
796 bp assembled on 2007-06-22
GenBank Submission: FJ632773
> BO13394.complete
GAAGTTATCAGTCGACATGAGCAATACTCAGCACTTAACTATTGGCTCGC
CAAAGCCCGTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGC
TTTTGCCCCTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGAT
TCCCTACCACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCT
CCCTGGTGAGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAA
CAGGGAAATCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGA
CGAAAAGTATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAG
CCCAGGAGAAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTC
TACTACCTGTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCA
CTATGCCGGATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCA
AGTTCTTTGGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCC
TGGTGCGAGCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGA
ATTGAGTCCGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGA
TCCAGGATCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCC
AAATACATGAACTCCCGGCGATCGGGCCAGGCCGATTATAATATGCTATA
CAATGAGGCCAAACGTGTCAAATTGGGGGCAAGCTTTCTAGACCAT
BO13394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO1-RA | 765 | CG6662-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
se-RA | 732 | CG6781-PA | 70..180 | 86..196 | 195 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO1-RA | 954 | CG6662-RA | 65..826 | 17..778 | 3810 | 100 | Plus |
se-RA | 825 | CG6781-RA | 108..218 | 86..196 | 195 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8524134..8524718 | 628..44 | 2925 | 100 | Minus |
3L | 28110227 | 3L | 8523953..8524075 | 750..628 | 615 | 100 | Minus |
3L | 28110227 | 3L | 8520715..8520825 | 86..196 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:27:03 has no hits.
BO13394.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:13 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-RA | 1..765 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:48 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-RA | 60..821 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:12 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO1-RA | 65..826 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:14 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6662-RA | 60..821 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:40 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO1-RA | 65..826 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:40 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8523868..8523897 | 751..780 | 93 | <- | Minus |
3L | 8523953..8524074 | 629..750 | 100 | <- | Minus |
3L | 8524134..8524717 | 45..628 | 100 | <- | Minus |
3L | 8524775..8524802 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:12 Download gff for
BO13394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8516968..8516997 | 751..780 | 93 | <- | Minus |
arm_3L | 8517053..8517174 | 629..750 | 100 | <- | Minus |
arm_3L | 8517234..8517817 | 45..628 | 100 | <- | Minus |
arm_3L | 8517875..8517902 | 17..44 | 100 | | Minus |
BO13394.pep Sequence
Translation from 16 to 796
> BO13394.pep
MSNTQHLTIGSPKPVFPDDGILKLYSMRFCPYAHRVHLVLDAKKIPYHAI
YINLRDKPEWFSLVSSSTKVPALELVKEQGNPVLIESLIICDYLDEKYPE
VPLYPKDLLKKAQEKILIERFGQFINAFYYLLLHDNPEQLVDTDHYAGLV
VYEEELKRRCTKFFGGDSPGMLDYMMWPWCERFDSLKYTFEQKFELSPER
FPTLIKWRDLMIQDRAVKCFYLDGQTHAKYMNSRRSGQADYNMLYNEAKR
VKLGASFLDH
BO13394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO1-PA | 254 | CG6662-PA | 1..254 | 1..254 | 1370 | 100 | Plus |
se-PA | 243 | CG6781-PA | 1..243 | 1..248 | 692 | 52.8 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 1..244 | 684 | 50.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..247 | 5..245 | 637 | 48.8 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..247 | 5..245 | 572 | 45.9 | Plus |