Clone BO13394 Report

Search the DGRC for BO13394

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG6662-RA
Protein status:BO13394.pep: validated full length
Sequenced Size:796

Clone Sequence Records

BO13394.3prime Sequence

769 bp (708 high quality bases) assembled on 2006-05-08

> BO13394.3prime
ATGGTCTAGAAAGCTTGCCCCCAATTTGACACGTTTGGCCTCATTGTATA
GCATATTATAATCGGCCTGGCCCGATCGCCGGGAGTTCATGTATTTGGCA
TGGGTCTGTCCATCCAGATAGAAACACTTGACAGCACGATCCTGGATCAT
CAAGTCGCGCCACTTAATCAAAGTGGGAAAACGTTCCGGACTCAATTCGA
ATTTTTGTTCAAAAGTGTATTTCAGAGAGTCAAAGCGCTCGCACCAGGGC
CACATCATGTAGTCAAGCATGCCTGGGCTGTCGCCACCAAAGAACTTGGT
ACAACGTCGCTTCAGTTCCTCCTCATAAACGACCAATCCGGCATAGTGAT
CGGTGTCAACCAGCTGCTCGGGATTGTCGTGCAGCAACAGGTAGTAGAAG
GCATTGATGAACTGTCCGAAACGTTCGATTAAAATCTTCTCCTGGGCTTT
TTTAAGCAGATCCTTGGGATACAATGGCACCTCCGGATACTTTTCGTCCA
AGTAGTCACAAATAATGAGCGACTCGATCAGCACAGGATTTCCCTGTTCC
TTGACCAGCTCCAGTGCCGGCACCTTTGTGGAGCTGCTCACCAGGGAGAA
CCACTCGGGTTTGTCGCGAAGATTGATGTAGATAGCGTGGTAGGGAATCT
TTTTGGCATCCAGGACCAGGTGCACACGGTGTGCATAGGGGCAAAAGCGC
ATCGAATACAGCTTTAAGATCCCATCATCCGGAAATACGGGGCTTTGGCG
AGCCAATAATTAAGTGCTG

BO13394.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6662-PA 765 CG6662-RA 40..762 741..19 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
GstO1-RA 954 CG6662-RA 77..826 769..19 3715 99.7 Minus
se-RA 825 CG6781-RA 108..218 711..601 195 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8524134..8524718 169..754 2880 99.8 Plus
3L 28110227 3L 8523953..8524075 47..169 615 100 Plus
3L 28110227 3L 8520715..8520825 711..601 195 78.4 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:10 has no hits.

BO13394.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:08 Download gff for BO13394.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6662-PA 13..765 18..769 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:29 Download gff for BO13394.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6662-PA 13..765 18..769 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:00 Download gff for BO13394.3prime
Subject Subject Range Query Range Percent Splice Strand
GstO1-RA 77..826 19..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:01:24 Download gff for BO13394.3prime
Subject Subject Range Query Range Percent Splice Strand
GstO1-RA 77..826 19..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:01:24 Download gff for BO13394.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8523870..8523897 19..46 100 <- Plus
3L 8523953..8524074 47..168 100 <- Plus
3L 8524134..8524724 169..760 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:00 Download gff for BO13394.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8516970..8516997 19..46 100 <- Plus
arm_3L 8517053..8517174 47..168 100 <- Plus
arm_3L 8517234..8517824 169..760 99   Plus

BO13394.5prime Sequence

718 bp (649 high quality bases) assembled on 2006-05-08

> BO13394.5prime
GAAGTTATCAGTCGACATGAGCAATACTCAGCACTTAACTATTGGCTCGC
CAAAGCCCGTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGC
TTTTGCCCCTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGAT
TCCCTACCACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCT
CCCTGGTGAGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAA
CAGGGAAATCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGA
CGAAAAGTATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAG
CCCAGGAGAAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTC
TACTACCTGTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCA
CTATGCCGGATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCA
AGTTCTTTGGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCC
TGGTGCGAGCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGA
ATTGAGTCCGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGA
TCCGGGATCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCC
AAATACATGAACTCCCCG

BO13394.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6662-PA 765 CG6662-RA 1..700 17..716 3475 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
GstO1-RA 954 CG6662-RA 65..764 17..716 3485 99.9 Plus
se-RA 825 CG6781-RA 108..218 86..196 195 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8524134..8524718 628..44 2925 100 Minus
3L 28110227 3L 8523987..8524075 716..628 430 98.9 Minus
3L 28110227 3L 8520715..8520825 86..196 195 78.4 Plus
Blast to na_te.dros performed on 2015-02-11 14:21:46 has no hits.

BO13394.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:09 Download gff for BO13394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6662-PA 1..701 17..718 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:31 Download gff for BO13394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6662-PA 1..701 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:27 Download gff for BO13394.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO1-RA 65..765 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:44 Download gff for BO13394.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO1-RA 65..765 17..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:44 Download gff for BO13394.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8523985..8524074 629..718 97 <- Minus
3L 8524134..8524717 45..628 100 <- Minus
3L 8524775..8524802 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:27 Download gff for BO13394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8517085..8517174 629..718 97 <- Minus
arm_3L 8517234..8517817 45..628 100 <- Minus
arm_3L 8517875..8517902 17..44 100   Minus

BO13394.complete Sequence

796 bp assembled on 2007-06-22

GenBank Submission: FJ632773

> BO13394.complete
GAAGTTATCAGTCGACATGAGCAATACTCAGCACTTAACTATTGGCTCGC
CAAAGCCCGTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGC
TTTTGCCCCTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGAT
TCCCTACCACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCT
CCCTGGTGAGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAA
CAGGGAAATCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGA
CGAAAAGTATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAG
CCCAGGAGAAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTC
TACTACCTGTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCA
CTATGCCGGATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCA
AGTTCTTTGGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCC
TGGTGCGAGCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGA
ATTGAGTCCGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGA
TCCAGGATCGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCC
AAATACATGAACTCCCGGCGATCGGGCCAGGCCGATTATAATATGCTATA
CAATGAGGCCAAACGTGTCAAATTGGGGGCAAGCTTTCTAGACCAT

BO13394.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
GstO1-RA 765 CG6662-PA 1..762 17..778 3810 100 Plus
se-RA 732 CG6781-PA 70..180 86..196 195 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
GstO1-RA 954 CG6662-RA 65..826 17..778 3810 100 Plus
se-RA 825 CG6781-RA 108..218 86..196 195 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8524134..8524718 628..44 2925 100 Minus
3L 28110227 3L 8523953..8524075 750..628 615 100 Minus
3L 28110227 3L 8520715..8520825 86..196 195 78.4 Plus
Blast to na_te.dros performed on 2014-11-27 20:27:03 has no hits.

BO13394.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:13 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
CG6662-RA 1..765 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:48 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
CG6662-RA 60..821 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:12 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
GstO1-RA 65..826 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:14 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
CG6662-RA 60..821 17..778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:40 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
GstO1-RA 65..826 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:40 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8523868..8523897 751..780 93 <- Minus
3L 8523953..8524074 629..750 100 <- Minus
3L 8524134..8524717 45..628 100 <- Minus
3L 8524775..8524802 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:12 Download gff for BO13394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8516968..8516997 751..780 93 <- Minus
arm_3L 8517053..8517174 629..750 100 <- Minus
arm_3L 8517234..8517817 45..628 100 <- Minus
arm_3L 8517875..8517902 17..44 100   Minus

BO13394.pep Sequence

Translation from 16 to 796

> BO13394.pep
MSNTQHLTIGSPKPVFPDDGILKLYSMRFCPYAHRVHLVLDAKKIPYHAI
YINLRDKPEWFSLVSSSTKVPALELVKEQGNPVLIESLIICDYLDEKYPE
VPLYPKDLLKKAQEKILIERFGQFINAFYYLLLHDNPEQLVDTDHYAGLV
VYEEELKRRCTKFFGGDSPGMLDYMMWPWCERFDSLKYTFEQKFELSPER
FPTLIKWRDLMIQDRAVKCFYLDGQTHAKYMNSRRSGQADYNMLYNEAKR
VKLGASFLDH

BO13394.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
GstO1-PA 254 CG6662-PA 1..254 1..254 1370 100 Plus
se-PA 243 CG6781-PA 1..243 1..248 692 52.8 Plus
GstO3-PA 241 CG6776-PA 1..240 1..244 684 50.8 Plus
GstO2-PB 250 CG6673-PB 6..247 5..245 637 48.8 Plus
GstO2-PA 251 CG6673-PA 6..247 5..245 572 45.9 Plus