Clone BO13396 Report

Search the DGRC for BO13396

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG7685-RA
Protein status:BO13396.pep: Imported from assembly
Sequenced Size:673

Clone Sequence Records

BO13396.3prime Sequence

503 bp (426 high quality bases) assembled on 2006-05-08

> BO13396.3prime
ATGGTCTAGAAAGCTTGCCGCACAGTCGTTGGGACACTTGGTCGCCGTGC
TCCACTCATCGCTGCCGTCGCAGCAGTCGCACACGTGGTCATTAATGCGG
CTGCTGGCCACGTAGATATCCAGGCCCCGGCCCGTGATGTGACGCTTCTG
GTAGCGACAGTAGAATCGCCCCTTGGCGCAGGCATTCGTGCTGGGCTCGT
CGCTGCCGTCCTCCTCACAGTCGCAGTAGTTGTCGTTCAGGTGGTCGAAC
GGGATCTCTTTGGAGCCGTCCAGACACCGGAACTTGCCCTCGAAGTTGGG
CTTGTAGGCGTCGTAGTCAAAGAGCCGTGTGCCCCTGACAATCTTGATGG
GATCCTCGTGACCCGCAACAGGTGAGGTTTCCCCGCCTGCCGGAGCAACT
GCATCGGCGCCTCCGCCATCGAAATCGTCCACGTCGCGCTGTTTGCTGCC
CAGGGACTGTATCATCTGCTGGTGCTTGCGCTTGATCTGCTGCAGATTCC
AAG

BO13396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-PA 642 CG7685-RA 157..639 501..19 2365 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-RB 922 CG7685-RB 242..724 501..19 2385 99.6 Minus
CG7685-RA 940 CG7685-RA 260..742 501..19 2385 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18405487..18405804 336..19 1575 99.7 Minus
3R 32079331 3R 18405259..18405426 501..334 825 99.4 Minus
Blast to na_te.dros performed on 2015-02-08 12:35:38 has no hits.

BO13396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:11 Download gff for BO13396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-PA 155..642 18..503 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:33 Download gff for BO13396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-PA 155..642 18..503 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:48 Download gff for BO13396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 258..742 19..503 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:35 Download gff for BO13396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 258..742 19..503 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:35 Download gff for BO13396.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18405257..18405425 335..503 98 -> Minus
3R 18405489..18405806 14..334 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:48 Download gff for BO13396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14230979..14231147 335..503 98 -> Minus
arm_3R 14231211..14231528 14..334 98 -> Minus

BO13396.5prime Sequence

671 bp (670 high quality bases) assembled on 2006-05-08

> BO13396.5prime
GAAGTTATCCCTCGACGTGCGTAAGACGTGGGTGAAGCGAGAGAATATAT
ACTTCAAGCCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATC
TTCCTGGTCGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCA
GCTGCCCGGAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGC
ACCAGCAGATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGAT
TTCGATGGCGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTC
ACCTGTTGCGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGC
TCTTCGACTACGACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGT
CTGGACGGCTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTG
CGACTGTGAGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCA
AGGGGCGATTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGC
CTGGATATCTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTG
CTGCGACGGCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACT
GTGCGGCAAGCTTTCTAGACC

BO13396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-PA 642 CG7685-RA 2..639 18..655 3190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-RA 940 CG7685-RA 105..742 18..655 3190 100 Plus
CG7685-RB 922 CG7685-RB 105..724 18..655 2910 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18405487..18405804 338..655 1590 100 Plus
3R 32079331 3R 18405218..18405426 132..340 1045 100 Plus
3R 32079331 3R 18405044..18405160 18..134 585 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:39:42 has no hits.

BO13396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:12 Download gff for BO13396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-PA 2..642 18..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:34 Download gff for BO13396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-PA 2..642 18..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:36 Download gff for BO13396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 105..742 18..655 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:21 Download gff for BO13396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 105..742 18..655 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:21 Download gff for BO13396.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18405044..18405159 18..133 100 -> Plus
3R 18405220..18405425 134..339 100 -> Plus
3R 18405489..18405806 340..660 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:36 Download gff for BO13396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14230766..14230881 18..133 100 -> Plus
arm_3R 14230942..14231147 134..339 100 -> Plus
arm_3R 14231211..14231528 340..660 98 -> Plus

BO13396.complete Sequence

673 bp assembled on 2010-07-07

GenBank Submission: KX796177

> BO13396.complete
GAAGTTATCAGTCGACATGCGTAAGACGTGGGTGAAGCGAGAGAATATAT
ACTTCAAGCCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATC
TTCCTGGTCGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCA
GCTGCCCGGAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGC
ACCAGCAGATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGAT
TTCGATGGCGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTC
ACCTGTTGCGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGC
TCTTCGACTACGACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGT
CTGGACGGCTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTG
CGACTGTGAGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCA
AGGGGCGATTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGC
CTGGATATCTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTG
CTGCGACGGCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACT
GTGCGGCAAGCTTTCTAGACCAT

BO13396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-RA 642 CG7685-PA 1..639 17..655 3195 100 Plus
CG7685-RB 624 CG7685-PB 1..621 17..655 2890 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-RA 940 CG7685-RA 104..742 17..655 3195 100 Plus
CG7685-RB 922 CG7685-RB 104..724 17..655 2890 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18405487..18405804 338..655 1590 100 Plus
3R 32079331 3R 18405218..18405426 132..340 1045 100 Plus
3R 32079331 3R 18405043..18405160 17..134 590 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:38:20 has no hits.

BO13396.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-07 10:07:54 Download gff for BO13396.complete
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 34..672 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:00 Download gff for BO13396.complete
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 104..742 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:11 Download gff for BO13396.complete
Subject Subject Range Query Range Percent Splice Strand
CG7685-RA 104..742 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:11 Download gff for BO13396.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18405043..18405159 17..133 100 -> Plus
3R 18405220..18405425 134..339 100 -> Plus
3R 18405489..18405804 340..657 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:00 Download gff for BO13396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14230765..14230881 17..133 100 -> Plus
arm_3R 14230942..14231147 134..339 100 -> Plus
arm_3R 14231211..14231526 340..657 99   Plus

BO13396.pep Sequence

Translation from 16 to 673

> BO13396.pep
MRKTWVKRENIYFKPFYKQKSKMFLLLIFLVGISFIAYQAFSLNQLPGVP
APWNLQQIKRKHQQMMQSLGSKQRDVDDFDGGGADAVAPAGGETSPVAGH
EDPIKIVRGTRLFDYDAYKPNFEGKFRCLDGSKEIPFDHLNDNYCDCEED
GSDEPSTNACAKGRFYCRYQKRHITGRGLDIYVASSRINDHVCDCCDGSD
EWSTATKCPNDCAASFLDH

BO13396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7685-PA 213 CG7685-PA 1..213 1..213 1177 100 Plus
CG7685-PB 207 CG7685-PB 1..207 1..213 1131 97.2 Plus
CG6453-PB 548 CG6453-PB 34..130 109..212 250 48.6 Plus
CG6453-PA 548 CG6453-PA 34..130 109..212 250 48.6 Plus