Clone Sequence Records
BO13396.3prime Sequence
503 bp (426 high quality bases) assembled on 2006-05-08
> BO13396.3prime
ATGGTCTAGAAAGCTTGCCGCACAGTCGTTGGGACACTTGGTCGCCGTGC
TCCACTCATCGCTGCCGTCGCAGCAGTCGCACACGTGGTCATTAATGCGG
CTGCTGGCCACGTAGATATCCAGGCCCCGGCCCGTGATGTGACGCTTCTG
GTAGCGACAGTAGAATCGCCCCTTGGCGCAGGCATTCGTGCTGGGCTCGT
CGCTGCCGTCCTCCTCACAGTCGCAGTAGTTGTCGTTCAGGTGGTCGAAC
GGGATCTCTTTGGAGCCGTCCAGACACCGGAACTTGCCCTCGAAGTTGGG
CTTGTAGGCGTCGTAGTCAAAGAGCCGTGTGCCCCTGACAATCTTGATGG
GATCCTCGTGACCCGCAACAGGTGAGGTTTCCCCGCCTGCCGGAGCAACT
GCATCGGCGCCTCCGCCATCGAAATCGTCCACGTCGCGCTGTTTGCTGCC
CAGGGACTGTATCATCTGCTGGTGCTTGCGCTTGATCTGCTGCAGATTCC
AAG
BO13396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-PA | 642 | CG7685-RA | 157..639 | 501..19 | 2365 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-RB | 922 | CG7685-RB | 242..724 | 501..19 | 2385 | 99.6 | Minus |
CG7685-RA | 940 | CG7685-RA | 260..742 | 501..19 | 2385 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18405487..18405804 | 336..19 | 1575 | 99.7 | Minus |
3R | 32079331 | 3R | 18405259..18405426 | 501..334 | 825 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:35:38 has no hits.
BO13396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:11 Download gff for
BO13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-PA | 155..642 | 18..503 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:33 Download gff for
BO13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-PA | 155..642 | 18..503 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:48 Download gff for
BO13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 258..742 | 19..503 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:35 Download gff for
BO13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 258..742 | 19..503 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:35 Download gff for
BO13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18405257..18405425 | 335..503 | 98 | -> | Minus |
3R | 18405489..18405806 | 14..334 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:48 Download gff for
BO13396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14230979..14231147 | 335..503 | 98 | -> | Minus |
arm_3R | 14231211..14231528 | 14..334 | 98 | -> | Minus |
BO13396.5prime Sequence
671 bp (670 high quality bases) assembled on 2006-05-08
> BO13396.5prime
GAAGTTATCCCTCGACGTGCGTAAGACGTGGGTGAAGCGAGAGAATATAT
ACTTCAAGCCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATC
TTCCTGGTCGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCA
GCTGCCCGGAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGC
ACCAGCAGATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGAT
TTCGATGGCGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTC
ACCTGTTGCGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGC
TCTTCGACTACGACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGT
CTGGACGGCTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTG
CGACTGTGAGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCA
AGGGGCGATTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGC
CTGGATATCTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTG
CTGCGACGGCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACT
GTGCGGCAAGCTTTCTAGACC
BO13396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-PA | 642 | CG7685-RA | 2..639 | 18..655 | 3190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-RA | 940 | CG7685-RA | 105..742 | 18..655 | 3190 | 100 | Plus |
CG7685-RB | 922 | CG7685-RB | 105..724 | 18..655 | 2910 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18405487..18405804 | 338..655 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 18405218..18405426 | 132..340 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 18405044..18405160 | 18..134 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:39:42 has no hits.
BO13396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:12 Download gff for
BO13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-PA | 2..642 | 18..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:34 Download gff for
BO13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-PA | 2..642 | 18..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:36 Download gff for
BO13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 105..742 | 18..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:21 Download gff for
BO13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 105..742 | 18..655 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:21 Download gff for
BO13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18405044..18405159 | 18..133 | 100 | -> | Plus |
3R | 18405220..18405425 | 134..339 | 100 | -> | Plus |
3R | 18405489..18405806 | 340..660 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:36 Download gff for
BO13396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14230766..14230881 | 18..133 | 100 | -> | Plus |
arm_3R | 14230942..14231147 | 134..339 | 100 | -> | Plus |
arm_3R | 14231211..14231528 | 340..660 | 98 | -> | Plus |
BO13396.complete Sequence
673 bp assembled on 2010-07-07
GenBank Submission: KX796177
> BO13396.complete
GAAGTTATCAGTCGACATGCGTAAGACGTGGGTGAAGCGAGAGAATATAT
ACTTCAAGCCCTTCTACAAGCAGAAGTCGAAGATGTTCCTGCTGCTGATC
TTCCTGGTCGGAATTTCGTTCATCGCGTATCAGGCCTTCTCGCTGAACCA
GCTGCCCGGAGTGCCTGCTCCGTGGAATCTGCAGCAGATCAAGCGCAAGC
ACCAGCAGATGATGCAGTCCCTGGGCAGCAAACAGCGCGACGTGGACGAT
TTCGATGGCGGAGGCGCCGATGCAGTTGCTCCGGCAGGCGGGGAAACCTC
ACCTGTTGCGGGTCACGAGGATCCCATCAAGATTGTCAGGGGCACACGGC
TCTTCGACTACGACGCCTACAAGCCCAACTTCGAGGGCAAGTTCCGGTGT
CTGGACGGCTCCAAAGAGATCCCGTTCGACCACCTGAACGACAACTACTG
CGACTGTGAGGAGGACGGCAGCGACGAGCCCAGCACGAATGCCTGCGCCA
AGGGGCGATTCTACTGTCGCTACCAGAAGCGTCACATCACGGGCCGGGGC
CTGGATATCTACGTGGCCAGCAGCCGCATTAATGACCACGTGTGCGACTG
CTGCGACGGCAGCGATGAGTGGAGCACGGCGACCAAGTGTCCCAACGACT
GTGCGGCAAGCTTTCTAGACCAT
BO13396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-RA | 642 | CG7685-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG7685-RB | 624 | CG7685-PB | 1..621 | 17..655 | 2890 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-RA | 940 | CG7685-RA | 104..742 | 17..655 | 3195 | 100 | Plus |
CG7685-RB | 922 | CG7685-RB | 104..724 | 17..655 | 2890 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18405487..18405804 | 338..655 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 18405218..18405426 | 132..340 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 18405043..18405160 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:38:20 has no hits.
BO13396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-07 10:07:54 Download gff for
BO13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 34..672 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:00 Download gff for
BO13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 104..742 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:11 Download gff for
BO13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7685-RA | 104..742 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:11 Download gff for
BO13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18405043..18405159 | 17..133 | 100 | -> | Plus |
3R | 18405220..18405425 | 134..339 | 100 | -> | Plus |
3R | 18405489..18405804 | 340..657 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:00 Download gff for
BO13396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14230765..14230881 | 17..133 | 100 | -> | Plus |
arm_3R | 14230942..14231147 | 134..339 | 100 | -> | Plus |
arm_3R | 14231211..14231526 | 340..657 | 99 | | Plus |
BO13396.pep Sequence
Translation from 16 to 673
> BO13396.pep
MRKTWVKRENIYFKPFYKQKSKMFLLLIFLVGISFIAYQAFSLNQLPGVP
APWNLQQIKRKHQQMMQSLGSKQRDVDDFDGGGADAVAPAGGETSPVAGH
EDPIKIVRGTRLFDYDAYKPNFEGKFRCLDGSKEIPFDHLNDNYCDCEED
GSDEPSTNACAKGRFYCRYQKRHITGRGLDIYVASSRINDHVCDCCDGSD
EWSTATKCPNDCAASFLDH
BO13396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7685-PA | 213 | CG7685-PA | 1..213 | 1..213 | 1177 | 100 | Plus |
CG7685-PB | 207 | CG7685-PB | 1..207 | 1..213 | 1131 | 97.2 | Plus |
CG6453-PB | 548 | CG6453-PB | 34..130 | 109..212 | 250 | 48.6 | Plus |
CG6453-PA | 548 | CG6453-PA | 34..130 | 109..212 | 250 | 48.6 | Plus |