Clone Sequence Records
BO13405.3prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-08
> BO13405.3prime
ATGGTCTAGAAAGCTTGCCGATCTCACGCACTTGGGTCGCTTGGTGCTGC
GATCCATTTCGCATTTCTCAAAGCTGCCGCACTTGACATTGCCGCAATAA
CTGCCAGTAGCTCCAGAGTTCTTGCTGCCGAAGGGCGATTTATCGGCTCC
AGAATTTCCCAGGACATTCGGTTGAGCACAACTGCGACCGTTGCACAAAT
TCGGACAGCATTTTCCGCCGATGGCGCTGCACTCGCTGTCATGCAGGCAT
TTTGGCGTACAGTTCTGAACCTTGGTGGATGAAGGACAATCACCCGCAGC
AAAGGCAGCAACCACACAGGCAGCAATTAACAGTGAAAGAAAGCCGAGCT
TAACCATGTCGACTGATAACT
BO13405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-PA | 342 | CG30197-RA | 1..339 | 357..19 | 1695 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 481 | CG30197-RA | 51..390 | 358..19 | 1700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14514282..14514456 | 291..117 | 875 | 100 | Minus |
2R | 25286936 | 2R | 14514804..14514901 | 116..19 | 490 | 100 | Minus |
2R | 25286936 | 2R | 14514152..14514215 | 354..291 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:56:27 has no hits.
BO13405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:22 Download gff for
BO13405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-PA | 1..342 | 16..357 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:49 Download gff for
BO13405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-PA | 1..342 | 16..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:17 Download gff for
BO13405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..390 | 15..368 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:19 Download gff for
BO13405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 45..394 | 15..368 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:19 Download gff for
BO13405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14514150..14514215 | 291..358 | 97 | -> | Minus |
2R | 14514283..14514456 | 117..290 | 100 | -> | Minus |
2R | 14514804..14514905 | 15..116 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:17 Download gff for
BO13405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10401655..10401720 | 291..358 | 97 | -> | Minus |
arm_2R | 10401788..10401961 | 117..290 | 100 | -> | Minus |
arm_2R | 10402309..10402410 | 15..116 | 98 | | Minus |
BO13405.5prime Sequence
371 bp (370 high quality bases) assembled on 2006-05-29
> BO13405.5prime
GAAGTTATCAGTCGACATGGTTAAGCTCGGCTTTCTTTCACTGTTAATTG
CTGCCTGTGTGGTTGCTGCCTTTGCTGCGGGTGATTGTCCTTCATCCACC
AAGGTTCAGAACTGTACGCCAAAATGCCTGCATGACAGCGAGTGCAGCGC
CATCGGCGGAAAATGCTGTCCGAATTTGTGCAACGGTCGCAGTTGTGCTC
AACCGAATGTCCTGGGAAATTCTGGAGCCGATAAATCGCCCTTCGGCAGC
AAGAACTCTGGAGCTACTGGCAGTTATTGCGGCAATGTCAAGTGCGGCAG
CTTTGAGAAATGCGAAATGGATCGCAGCACCAAGCGACCCAAGTGCGTGA
GATCGGCAAGCTTTCTAGACC
BO13405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-PA | 342 | CG30197-RA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 481 | CG30197-RA | 51..390 | 16..355 | 1700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14514282..14514456 | 83..257 | 875 | 100 | Plus |
2R | 25286936 | 2R | 14514804..14514901 | 258..355 | 490 | 100 | Plus |
2R | 25286936 | 2R | 14514152..14514215 | 20..83 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:45:55 has no hits.
BO13405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:23 Download gff for
BO13405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-PA | 1..342 | 17..358 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:50 Download gff for
BO13405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-PA | 1..342 | 17..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:35:59 Download gff for
BO13405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..390 | 6..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:02:14 Download gff for
BO13405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 45..394 | 6..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:02:14 Download gff for
BO13405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14514804..14514905 | 258..359 | 98 | | Plus |
2R | 14514150..14514215 | 16..83 | 97 | -> | Plus |
2R | 14514283..14514456 | 84..257 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:35:59 Download gff for
BO13405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10401655..10401720 | 16..83 | 97 | -> | Plus |
arm_2R | 10401788..10401961 | 84..257 | 100 | -> | Plus |
arm_2R | 10402309..10402410 | 258..359 | 98 | | Plus |
BO13405.complete Sequence
373 bp assembled on 2006-10-11
GenBank Submission: FJ632774
> BO13405.complete
GAAGTTATCAGTCGACATGGTTAAGCTCGGCTTTCTTTCACTGTTAATTG
CTGCCTGTGTGGTTGCTGCCTTTGCTGCGGGTGATTGTCCTTCATCCACC
AAGGTTCAGAACTGTACGCCAAAATGCCTGCATGACAGCGAGTGCAGCGC
CATCGGCGGAAAATGCTGTCCGAATTTGTGCAACGGTCGCAGTTGTGCTC
AACCGAATGTCCTGGGAAATTCTGGAGCCGATAAATCGCCCTTCGGCAGC
AAGAACTCTGGAGCTACTGGCAGTTATTGCGGCAATGTCAAGTGCGGCAG
CTTTGAGAAATGCGAAATGGATCGCAGCACCAAGCGACCCAAGTGCGTGA
GATCGGCAAGCTTTCTAGACCAT
BO13405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 342 | CG30197-PA | 1..339 | 17..355 | 1695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-RA | 481 | CG30197-RA | 51..390 | 16..355 | 1700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14514282..14514456 | 83..257 | 875 | 100 | Plus |
2R | 25286936 | 2R | 14514804..14514901 | 258..355 | 490 | 100 | Plus |
2R | 25286936 | 2R | 14514152..14514215 | 20..83 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:22:14 has no hits.
BO13405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:27 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 1..342 | 17..358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:48 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..390 | 6..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:47 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 48..386 | 17..357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:27 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 41..390 | 6..359 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:15 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30197-RA | 52..390 | 17..357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:15 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14514151..14514215 | 17..83 | 97 | -> | Plus |
2R | 14514283..14514456 | 84..257 | 100 | -> | Plus |
2R | 14514804..14514901 | 258..357 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:47 Download gff for
BO13405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10401656..10401720 | 17..83 | 97 | -> | Plus |
arm_2R | 10401788..10401961 | 84..257 | 100 | -> | Plus |
arm_2R | 10402309..10402406 | 258..357 | 98 | | Plus |
BO13405.pep Sequence
Translation from 16 to 373
> BO13405.pep
MVKLGFLSLLIAACVVAAFAAGDCPSSTKVQNCTPKCLHDSECSAIGGKC
CPNLCNGRSCAQPNVLGNSGADKSPFGSKNSGATGSYCGNVKCGSFEKCE
MDRSTKRPKCVRSASFLDH
BO13405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30197-PA | 113 | CG30197-PA | 1..113 | 1..113 | 621 | 100 | Plus |