Clone BO13406 Report

Search the DGRC for BO13406

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG4860-RA
Protein status:BO13406.pep: Inserted from web
Sequenced Size:1279

Clone Sequence Records

BO13406.complete Sequence

1279 bp assembled on 2008-09-03

GenBank Submission: KX794406

> BO13406.complete
GAAGTTATCAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACGCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
GTGCAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTA
CACCCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACG
GATCGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGC
TACCAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAG
CGGGGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAA
TCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAG
AAGGAAAGCAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCT
GGAGGACGTTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATG
GCTTCAAGATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCC
GCCCAGGCCACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTA
TTCGCAGAAGAGGGTGGCCTTCGGAAAGCATCTGGCACGGTTGCAGCTCA
TCCAGCAGAAGCTGGCCGACATGGCCACGCGGGTGGAGATCTCAAGGCTG
CTAACGTGGCGTGCCGCTTGGCTGAAGGATAATGGGCTGCCAATCACAAA
GGAGGCGGCCATGGCCAAGCTGCATGCCTCCGAGTCCGCCACCTTTTGTG
CCCACCAGTGCATCCAGATCCTGGGTGGGATGGGGTACACCACCGATCTG
CCTGCGGAGCTTTACTACCGCAACGCCCGCGTCACAGAGATTTACGAGGG
AACCTCGGAGATCCAAAGAATTGTGATCGCCAACGCAGTGCTGCGGGAAT
TGGGAAAGGAGGCAAGCTTTCTAGACCAT

BO13406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1248 CG4860-PA 1..1245 17..1261 6210 99.9 Plus
Arc42-RA 1218 CG4703-PA 760..1187 803..1230 370 72.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1393 CG4860-RA 15..1259 17..1261 6210 99.9 Plus
Arc42-RA 1418 CG4703-RA 901..1328 803..1230 370 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12220015..12220986 1261..290 4860 100 Minus
3R 32079331 3R 12221113..12221356 293..50 1205 99.6 Minus
3R 32079331 3R 19878792..19879219 803..1230 370 72.4 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:08 has no hits.

BO13406.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:45 Download gff for BO13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 12..1265 14..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:21 Download gff for BO13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 15..1259 17..1263 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:21 Download gff for BO13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 14..1258 17..1263 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:37 Download gff for BO13406.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 15..1259 17..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:37 Download gff for BO13406.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12220012..12220985 291..1263 99 <- Minus
3R 12221116..12221355 51..290 99 <- Minus
3R 12221417..12221450 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:21 Download gff for BO13406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8045734..8046707 291..1263 99 <- Minus
arm_3R 8046838..8047077 51..290 99 <- Minus
arm_3R 8047139..8047172 17..50 100   Minus

BO13406.5prime Sequence

402 bp (350 high quality bases) assembled on 2006-05-29

> BO13406.5prime
GAAGTTATCACCCTACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACTCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
TT

BO13406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 1248 CG4860-RA 1..384 17..400 1870 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1393 CG4860-RA 15..398 17..400 1890 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12221113..12221356 293..50 1205 99.6 Minus
3R 32079331 3R 12220876..12220986 400..290 540 99.1 Minus
3R 32079331 3R 12221415..12221450 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:18:53 has no hits.

BO13406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:25 Download gff for BO13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-PA 1..386 17..402 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:53 Download gff for BO13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-PA 1..386 17..402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:18 Download gff for BO13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 15..400 17..402 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:09 Download gff for BO13406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 15..400 17..402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:09 Download gff for BO13406.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12220874..12220985 291..402 98 <- Minus
3R 12221116..12221355 51..290 99 <- Minus
3R 12221417..12221450 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:18 Download gff for BO13406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8046596..8046707 291..402 98 <- Minus
arm_3R 8046838..8047077 51..290 99 <- Minus
arm_3R 8047139..8047172 17..50 100   Minus

BO13406.3prime Sequence

919 bp (802 high quality bases) assembled on 2006-05-08

> BO13406.3prime
ATGGTCTAGAAAGCTTGCCTCCTTTCCCAATTCCCGCAGCACTGCGTTGG
CGATCACAATTCTTTGGATCTCCGAGGTTCCCTCGTAAATCTCTGTGACG
CGGGCGTTGCGGTAGTAAAGCTCCGCAGGCAGATCGGTGGTGTACCCCAT
CCCACCCAGGATCTGGATGCACTGGTGGGCACAAAAGGTGGCGGACTCGG
AGGCATGCAGCTTGGCCATGGCCGCCTCCTTTGTGATTGGCAGCCCATTA
TCCTTCAGCCAAGCGGCACGCCACGTTAGCAGCCTTGAGATCTCCACCCG
CGTGGCCATGTCGGCCAGCTTCTGCTGGATGAGCTGCAACCGTGCCAGAT
GCTTTCCGAAGGCCACCCTCTTCTGCGAATAATCCACGGCTAGTTCCAGG
GCAGCTTGTGCGATACCGGTGGCCTGGGCGGCTATACCGATCCTGCCACA
GTCCAAGGACTGCATGGCGATCTTGAAGCCATCACCGGCAGCTCCAAGGA
CCCGGGATCGCGGCACGTGAACGTCCTCCAGCACCAGCTGGCAAGTCGAA
GTCGCGCGCATGCCCATTTTGCTTTCCTTCTTGGCTATGGAGAGTCCTGG
AACATCCTTGGGCGTAAGAAAGGCAGTGATTCCCTTGTGTTTCATGCTCT
TGTCCACCGTGGCAAAGACGATACCCCCGCTGGCCTCCTTGGAGTTTGAT
ATCCACGCTTTAGTGCCGTTTATTTGGTAGCTGTCCCCTTGCAGCTTGGC
CGTGGTGCTGGCAGCTCCTGCATCCGATCCGTTTCCAGGTTCCGATAGTG
CATAGAAAGCGATGTGCTCACCCTGGGTGTACGGCACCAGGAAATCCTGC
TTCTGCTGCTCGGTTCCATGCTGCTGCACTGCACCCAGGTACAGGTTATT
CACGCCCATCACAATGGGA

BO13406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 1248 CG4860-RA 347..1245 917..19 4470 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1393 CG4860-RA 361..1259 917..19 4480 99.9 Minus
Arc42-RA 1418 CG4703-RA 901..1328 477..50 370 72.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12220015..12220913 19..917 4480 99.9 Plus
3R 32079331 3R 19878792..19879219 477..50 370 72.4 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:51 has no hits.

BO13406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:24 Download gff for BO13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-PA 346..1248 16..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:51 Download gff for BO13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-PA 346..1248 16..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:31 Download gff for BO13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 360..1266 13..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:02 Download gff for BO13406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 360..1266 13..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:02 Download gff for BO13406.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12220008..12220913 13..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:31 Download gff for BO13406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8045730..8046635 13..918 99   Plus

BO13406.pep Sequence

Translation from 16 to 1279

> BO13406.pep
MQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQKTCRE
FANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQA
YAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEH
IAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASGGIVF
ATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHV
PRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRV
AFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMA
KLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQ
RIVIANAVLRELGKEASFLDH

BO13406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 415 CG4860-PA 1..415 1..415 2101 100 Plus
Arc42-PA 405 CG4703-PA 19..402 29..411 1284 64.1 Plus
CG3902-PA 414 CG3902-PA 34..411 34..411 698 37.5 Plus
CG12262-PA 419 CG12262-PA 36..408 36..405 605 37.5 Plus
CG6638-PA 420 CG6638-PA 39..418 37..411 589 37 Plus