Clone Sequence Records
BO13406.complete Sequence
1279 bp assembled on 2008-09-03
GenBank Submission: KX794406
> BO13406.complete
GAAGTTATCAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACGCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
GTGCAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTA
CACCCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACG
GATCGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGC
TACCAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAG
CGGGGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAA
TCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAG
AAGGAAAGCAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCT
GGAGGACGTTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATG
GCTTCAAGATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCC
GCCCAGGCCACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTA
TTCGCAGAAGAGGGTGGCCTTCGGAAAGCATCTGGCACGGTTGCAGCTCA
TCCAGCAGAAGCTGGCCGACATGGCCACGCGGGTGGAGATCTCAAGGCTG
CTAACGTGGCGTGCCGCTTGGCTGAAGGATAATGGGCTGCCAATCACAAA
GGAGGCGGCCATGGCCAAGCTGCATGCCTCCGAGTCCGCCACCTTTTGTG
CCCACCAGTGCATCCAGATCCTGGGTGGGATGGGGTACACCACCGATCTG
CCTGCGGAGCTTTACTACCGCAACGCCCGCGTCACAGAGATTTACGAGGG
AACCTCGGAGATCCAAAGAATTGTGATCGCCAACGCAGTGCTGCGGGAAT
TGGGAAAGGAGGCAAGCTTTCTAGACCAT
BO13406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1248 | CG4860-PA | 1..1245 | 17..1261 | 6210 | 99.9 | Plus |
Arc42-RA | 1218 | CG4703-PA | 760..1187 | 803..1230 | 370 | 72.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1393 | CG4860-RA | 15..1259 | 17..1261 | 6210 | 99.9 | Plus |
Arc42-RA | 1418 | CG4703-RA | 901..1328 | 803..1230 | 370 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12220015..12220986 | 1261..290 | 4860 | 100 | Minus |
3R | 32079331 | 3R | 12221113..12221356 | 293..50 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 19878792..19879219 | 803..1230 | 370 | 72.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:08 has no hits.
BO13406.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:45 Download gff for
BO13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 12..1265 | 14..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:21 Download gff for
BO13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 15..1259 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:21 Download gff for
BO13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 14..1258 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:37 Download gff for
BO13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 15..1259 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:37 Download gff for
BO13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12220012..12220985 | 291..1263 | 99 | <- | Minus |
3R | 12221116..12221355 | 51..290 | 99 | <- | Minus |
3R | 12221417..12221450 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:21 Download gff for
BO13406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8045734..8046707 | 291..1263 | 99 | <- | Minus |
arm_3R | 8046838..8047077 | 51..290 | 99 | <- | Minus |
arm_3R | 8047139..8047172 | 17..50 | 100 | | Minus |
BO13406.5prime Sequence
402 bp (350 high quality bases) assembled on 2006-05-29
> BO13406.5prime
GAAGTTATCACCCTACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACTCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
TT
BO13406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-PA | 1248 | CG4860-RA | 1..384 | 17..400 | 1870 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1393 | CG4860-RA | 15..398 | 17..400 | 1890 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12221113..12221356 | 293..50 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 12220876..12220986 | 400..290 | 540 | 99.1 | Minus |
3R | 32079331 | 3R | 12221415..12221450 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:18:53 has no hits.
BO13406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:25 Download gff for
BO13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-PA | 1..386 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:53 Download gff for
BO13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-PA | 1..386 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:18 Download gff for
BO13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 15..400 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:09 Download gff for
BO13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 15..400 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:09 Download gff for
BO13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12220874..12220985 | 291..402 | 98 | <- | Minus |
3R | 12221116..12221355 | 51..290 | 99 | <- | Minus |
3R | 12221417..12221450 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:18 Download gff for
BO13406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8046596..8046707 | 291..402 | 98 | <- | Minus |
arm_3R | 8046838..8047077 | 51..290 | 99 | <- | Minus |
arm_3R | 8047139..8047172 | 17..50 | 100 | | Minus |
BO13406.3prime Sequence
919 bp (802 high quality bases) assembled on 2006-05-08
> BO13406.3prime
ATGGTCTAGAAAGCTTGCCTCCTTTCCCAATTCCCGCAGCACTGCGTTGG
CGATCACAATTCTTTGGATCTCCGAGGTTCCCTCGTAAATCTCTGTGACG
CGGGCGTTGCGGTAGTAAAGCTCCGCAGGCAGATCGGTGGTGTACCCCAT
CCCACCCAGGATCTGGATGCACTGGTGGGCACAAAAGGTGGCGGACTCGG
AGGCATGCAGCTTGGCCATGGCCGCCTCCTTTGTGATTGGCAGCCCATTA
TCCTTCAGCCAAGCGGCACGCCACGTTAGCAGCCTTGAGATCTCCACCCG
CGTGGCCATGTCGGCCAGCTTCTGCTGGATGAGCTGCAACCGTGCCAGAT
GCTTTCCGAAGGCCACCCTCTTCTGCGAATAATCCACGGCTAGTTCCAGG
GCAGCTTGTGCGATACCGGTGGCCTGGGCGGCTATACCGATCCTGCCACA
GTCCAAGGACTGCATGGCGATCTTGAAGCCATCACCGGCAGCTCCAAGGA
CCCGGGATCGCGGCACGTGAACGTCCTCCAGCACCAGCTGGCAAGTCGAA
GTCGCGCGCATGCCCATTTTGCTTTCCTTCTTGGCTATGGAGAGTCCTGG
AACATCCTTGGGCGTAAGAAAGGCAGTGATTCCCTTGTGTTTCATGCTCT
TGTCCACCGTGGCAAAGACGATACCCCCGCTGGCCTCCTTGGAGTTTGAT
ATCCACGCTTTAGTGCCGTTTATTTGGTAGCTGTCCCCTTGCAGCTTGGC
CGTGGTGCTGGCAGCTCCTGCATCCGATCCGTTTCCAGGTTCCGATAGTG
CATAGAAAGCGATGTGCTCACCCTGGGTGTACGGCACCAGGAAATCCTGC
TTCTGCTGCTCGGTTCCATGCTGCTGCACTGCACCCAGGTACAGGTTATT
CACGCCCATCACAATGGGA
BO13406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-PA | 1248 | CG4860-RA | 347..1245 | 917..19 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1393 | CG4860-RA | 361..1259 | 917..19 | 4480 | 99.9 | Minus |
Arc42-RA | 1418 | CG4703-RA | 901..1328 | 477..50 | 370 | 72.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12220015..12220913 | 19..917 | 4480 | 99.9 | Plus |
3R | 32079331 | 3R | 19878792..19879219 | 477..50 | 370 | 72.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:24:51 has no hits.
BO13406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:24 Download gff for
BO13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-PA | 346..1248 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:51 Download gff for
BO13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-PA | 346..1248 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:31 Download gff for
BO13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 360..1266 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:02 Download gff for
BO13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 360..1266 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:02 Download gff for
BO13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12220008..12220913 | 13..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:31 Download gff for
BO13406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8045730..8046635 | 13..918 | 99 | | Plus |
BO13406.pep Sequence
Translation from 16 to 1279
> BO13406.pep
MQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQKTCRE
FANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQA
YAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEH
IAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASGGIVF
ATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHV
PRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRV
AFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMA
KLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQ
RIVIANAVLRELGKEASFLDH
BO13406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-PA | 415 | CG4860-PA | 1..415 | 1..415 | 2101 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 19..402 | 29..411 | 1284 | 64.1 | Plus |
CG3902-PA | 414 | CG3902-PA | 34..411 | 34..411 | 698 | 37.5 | Plus |
CG12262-PA | 419 | CG12262-PA | 36..408 | 36..405 | 605 | 37.5 | Plus |
CG6638-PA | 420 | CG6638-PA | 39..418 | 37..411 | 589 | 37 | Plus |