Clone BO13409 Report

Search the DGRC for BO13409

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG17715-RB
Protein status:BO13409.pep: Imported from assembly
Sequenced Size:856

Clone Sequence Records

BO13409.5prime Sequence

847 bp (751 high quality bases) assembled on 2006-05-30

> BO13409.5prime
GAAGTTATCAGTCGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCG
TAACGCGACAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTG
AGGACGCAACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTG
TAGAAACTACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGG
AGTTGCTATGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCT
CTTGGCAGGCTAGATGCCGACAAGGAAAAAAAATTATACGAGAGTCAACT
GGCTTTCGGTAGTTGGCGCACTCGCTTCGGACGACTTTCTAATAAGACGG
AATTGGGCCAAGTTATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGG
CTGCGAAAAAAATTGGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATT
GTACAGCATTTTCTTTGTAAATGCAGTGCCGTTTATCGCTTTCGGATTCC
TTGACAATTTCATAATGATCATGGCGGGTGAATACATTGAATATTATTTG
GGCCACTTTATAACGCTGTCTACAATGGCAGCCGCAGGACTAGGAAACAC
CATAAGCGATATTTTAGGCATCACTATGGCCACCTACGTTGAGAATGGGT
GCCAGATATTGGGTCTAAAGCAGCCCAATTTGACTCCAGCGCAATTTGAA
TTAAAGTCTAGCAAGCGGTCTTCAAGTTACGGACGGATTGTCGGGATCAC
TGTAGGCTGTTTGCTTGGAATGTGTCCTTTATGGTTTATGGATGAAAAAG
CAGATAAGGTGAATGTAAAAGATGAAATCCCGAAAAATGCAAGCTTT

BO13409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-PD 825 CG17715-RD 1..822 17..838 4110 100 Plus
CG17715-PB 825 CG17715-RB 1..822 17..838 4110 100 Plus
CG17715-PF 702 CG17715-RF 278..699 417..838 2110 100 Plus
CG17715-PC 702 CG17715-RC 278..699 417..838 2110 100 Plus
CG17715-PA 408 CG17715-RA 1..400 17..416 2000 100 Plus
CG17715-PE 408 CG17715-RE 1..400 17..416 2000 100 Plus
CG17715-PF 702 CG17715-RF 1..277 17..293 1385 100 Plus
CG17715-PC 702 CG17715-RC 1..277 17..293 1385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RB 1624 CG17715-RB 293..1114 17..838 4110 100 Plus
CG17715-RD 5581 CG17715-RD 352..1173 17..838 4110 100 Plus
CG17715-RG 1439 CG17715-RG 293..1084 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 808242..808520 295..17 1395 100 Minus
2L 23513712 2L 22844571..22844849 17..295 1395 100 Plus
2R 25286936 2R 803458..803663 731..526 1030 100 Minus
2L 23513712 2L 22849428..22849633 526..731 1030 100 Plus
2R 25286936 2R 803999..804121 416..294 615 100 Minus
2L 23513712 2L 22848970..22849092 294..416 615 100 Plus
2R 25286936 2R 803291..803402 838..727 545 99.1 Minus
2L 23513712 2L 22849689..22849800 727..838 545 99.1 Plus
2R 25286936 2R 803717..803785 527..459 345 100 Minus
2L 23513712 2L 22849306..22849374 459..527 345 100 Plus
2R 25286936 2R 803836..803878 458..416 215 100 Minus
2L 23513712 2L 22849213..22849255 416..458 215 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:12:12 has no hits.

BO13409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:23 Download gff for BO13409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17715-PB 1..825 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:37 Download gff for BO13409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 352..1173 17..838 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:34 Download gff for BO13409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 352..1173 17..838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:34 Download gff for BO13409.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22849429..22849632 527..730 100 -> Plus
2L 22849693..22849800 731..838 100   Plus
2L 22844571..22844847 17..293 100 -> Plus
2L 22848970..22849092 294..416 100 -> Plus
2L 22849214..22849255 417..458 100 -> Plus
2L 22849306..22849373 459..526 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:37 Download gff for BO13409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22737303..22737579 17..293 100 -> Plus
arm_2L 22741702..22741824 294..416 100 -> Plus
arm_2L 22741946..22741987 417..458 100 -> Plus
arm_2L 22742038..22742105 459..526 100 -> Plus
arm_2L 22742161..22742364 527..730 100 -> Plus
arm_2L 22742425..22742532 731..838 100   Plus

BO13409.complete Sequence

856 bp assembled on 2008-08-14

GenBank Submission: FJ632775

> BO13409.complete
GAAGTTATCAGTCGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCG
TAACGCGACAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTG
AGGACGCAACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTG
TAGAAACTACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGG
AGTTGCTATGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCT
CTTGGCAGGCTAGATGCCGACAAGGAAAAAAAATTATACGAGAGTCAACT
GGCTTTCGGTAGTTGGCGCACTCGCTTCGGACGACTTTCTAATAAGACGG
AATTGGGCCAAGTTATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGG
CTGCGAAAAAAATTGGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATT
GTACAGCATTTTCTTTGTAAATGCAGTGCCGTTTATCGCTTTCGGATTCC
TTGACAATTTCATAATGATCATGGCGGGTGAATACATTGAATATTATTTG
GGCCACTTTATAACGCTGTCTACAATGGCAGCCGCAGGACTAGGAAACAC
CATAAGCGATATTTTAGGCATCACTATGGCCACCTACGTTGAGAATGGGT
GCCAGATATTGGGTCTAAAGCAGCCCAATTTGACTCCAGCGCAATTTGAA
TTAAAGTCTAGCAAGCGGTCTTCAAGTTACGGACGGATTGTCGGGATCAC
TGTAGGCTGTTTGCTTGGAATGTGTCCTTTATGGTTTATGGATGAAAAAG
CAGATAAGGTGAATGTAAAAGATGAAATCCCGAAAAATGCAAGCTTTCTA
GACCAT

BO13409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RB 825 CG17715-PB 1..822 17..838 4110 100 Plus
CG17715-RD 825 CG17715-PD 1..822 17..838 4110 100 Plus
CG17715-RG 810 CG17715-PG 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-RB 1624 CG17715-RB 293..1114 17..838 4110 100 Plus
CG17715-RD 5581 CG17715-RD 352..1173 17..838 4110 100 Plus
CG17715-RG 1439 CG17715-RG 293..1084 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 808242..808520 295..17 1395 100 Minus
2L 23513712 2L 22844571..22844849 17..295 1395 100 Plus
2R 25286936 2R 803458..803663 731..526 1030 100 Minus
2L 23513712 2L 22849428..22849633 526..731 1030 100 Plus
2R 25286936 2R 803999..804121 416..294 615 100 Minus
2L 23513712 2L 22848970..22849092 294..416 615 100 Plus
2R 25286936 2R 803291..803402 838..727 545 99.1 Minus
2L 23513712 2L 22849689..22849800 727..838 545 99.1 Plus
2R 25286936 2R 803717..803785 527..459 345 100 Minus
2L 23513712 2L 22849306..22849374 459..527 345 100 Plus
2R 25286936 2R 803836..803878 458..416 215 100 Minus
2L 23513712 2L 22849213..22849255 416..458 215 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:14 has no hits.

BO13409.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:42 Download gff for BO13409.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 306..1127 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:33 Download gff for BO13409.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 352..1173 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:15 Download gff for BO13409.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 306..1127 17..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:45 Download gff for BO13409.complete
Subject Subject Range Query Range Percent Splice Strand
CG17715-RD 352..1173 17..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:45 Download gff for BO13409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22844571..22844847 17..293 100 -> Plus
2L 22848970..22849092 294..416 100 -> Plus
2L 22849214..22849255 417..458 100 -> Plus
2L 22849306..22849373 459..526 100 -> Plus
2L 22849429..22849632 527..730 100 -> Plus
2L 22849693..22849800 731..840 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:33 Download gff for BO13409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22742038..22742105 459..526 100 -> Plus
arm_2L 22737303..22737579 17..293 100 -> Plus
arm_2L 22741702..22741824 294..416 100 -> Plus
arm_2L 22741946..22741987 417..458 100 -> Plus
arm_2L 22742161..22742364 527..730 100 -> Plus
arm_2L 22742425..22742532 731..840 98   Plus

BO13409.pep Sequence

Translation from 16 to 856

> BO13409.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKNASFLDH

BO13409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17715-PB 274 CG17715-PB 1..274 1..274 1422 100 Plus
CG17715-PD 274 CG17715-PD 1..274 1..274 1422 100 Plus
CG17715-PG 269 CG17715-PG 1..267 1..267 1373 98.9 Plus
CG17715-PH 268 CG17715-PH 1..268 1..274 1372 97.4 Plus
CG17715-PC 233 CG17715-PC 1..233 1..274 1150 84.7 Plus