Clone BO13411 Report

Search the DGRC for BO13411

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1265-RB
Protein status:BO13411.pep: Imported from assembly
Sequenced Size:697

Clone Sequence Records

BO13411.3prime Sequence

695 bp (694 high quality bases) assembled on 2006-05-08

> BO13411.3prime
ATGGTCTAGAAAGCTTGCCTCCGCCTTGGCCTTCTTCTTGTAGACGCAAG
CGGCGGTGAAAACGGAGGCGCTAAGGAACGTCGAAATCAGGAAGTTTGAT
AGCAACATCCAATCGTGGGACTGGAAGAACACCGTGTAGATTCGAGTCAT
GTTTGTAAAGGCGGAGAGCGCCCATGTGGTTCTACTGACGGAACTGGCAT
CCTTGGTCCTCAGAATAGCCAGCAGCTGGAGGACCTTACTCGTGGCTCCA
ATGGGAGTGCAGAAAGGCACCAGGAACTTAAGGATGATAATGGGAAAGAG
CTTCATGTATATGAGAGTGGCCACTATACTATACAGTATGGCCACCACTT
GCGTCCTCCTTCCCAGCAGATCCTGGTACTTGAAGGCGTAGTAAATCAGG
GCGTACTCCTGCAGCAGCAAAACAGGATACTCCATGTACGAGAGGAAGTC
GTAGCCACTGGTGTAGTTGTACGACAACATCACCGTATAACTGAACAGCT
CCAGGCACAGTCCCAAAACACTGATGCCTTTCGAGGACTCGTTCGCCCGT
ATCGTGTTTATCTGCGGAACCTTGATCACCAGGCAGGACGAGACCGTTAT
CAGGCTAAGGAGGTCCGCCACCACGAGCACTGGGCCGCGCTCCAGGTATT
CGGACACCACATCTCCGAGAGCTCCACTCATGTCGACTGATAACT

BO13411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-PB 666 CG1265-RB 1..663 681..19 3315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 828 CG1265-RB 40..702 681..19 3315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4255034..4255295 529..268 1310 100 Minus
3L 28110227 3L 4254815..4254969 681..527 775 100 Minus
3L 28110227 3L 4255800..4255927 146..19 640 100 Minus
3L 28110227 3L 4255609..4255730 268..147 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:26:39 has no hits.

BO13411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:31 Download gff for BO13411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-PB 1..666 15..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:59 Download gff for BO13411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-PB 1..666 15..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:56 Download gff for BO13411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..707 11..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:38 Download gff for BO13411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..707 11..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:38 Download gff for BO13411.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4255610..4255730 147..267 100 -> Minus
3L 4255800..4255932 11..146 97   Minus
3L 4254809..4254968 528..687 98 -> Minus
3L 4255036..4255295 268..527 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:56 Download gff for BO13411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4254809..4254968 528..687 98 -> Minus
arm_3L 4255036..4255295 268..527 100 -> Minus
arm_3L 4255610..4255730 147..267 100 -> Minus
arm_3L 4255800..4255932 11..146 97   Minus

BO13411.5prime Sequence

695 bp (694 high quality bases) assembled on 2006-05-29

> BO13411.5prime
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGGCAAGCTTTCTAGACC

BO13411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-PB 666 CG1265-RB 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 828 CG1265-RB 40..702 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4255034..4255295 169..430 1310 100 Plus
3L 28110227 3L 4254815..4254969 17..171 775 100 Plus
3L 28110227 3L 4255800..4255927 552..679 640 100 Plus
3L 28110227 3L 4255609..4255730 430..551 610 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:41:18 has no hits.

BO13411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:32 Download gff for BO13411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-PB 1..666 17..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:01 Download gff for BO13411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-PB 1..666 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:33 Download gff for BO13411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..707 11..687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:46 Download gff for BO13411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..707 11..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:46 Download gff for BO13411.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4254809..4254968 11..170 98 -> Plus
3L 4255036..4255295 171..430 100 -> Plus
3L 4255610..4255730 431..551 100 -> Plus
3L 4255800..4255932 552..687 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:33 Download gff for BO13411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4254809..4254968 11..170 98 -> Plus
arm_3L 4255036..4255295 171..430 100 -> Plus
arm_3L 4255610..4255730 431..551 100 -> Plus
arm_3L 4255800..4255932 552..687 97   Plus

BO13411.complete Sequence

697 bp assembled on 2008-08-15

GenBank Submission: FJ632776

> BO13411.complete
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGGCAAGCTTTCTAGACCAT

BO13411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 666 CG1265-PB 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 828 CG1265-RB 40..702 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4255034..4255295 169..430 1310 100 Plus
3L 28110227 3L 4254815..4254969 17..171 775 100 Plus
3L 28110227 3L 4255800..4255927 552..679 640 100 Plus
3L 28110227 3L 4255609..4255730 430..551 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:49:33 has no hits.

BO13411.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:33 Download gff for BO13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 36..709 11..687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:22 Download gff for BO13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 40..702 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:33 Download gff for BO13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 42..704 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:03 Download gff for BO13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 40..702 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:03 Download gff for BO13411.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4255610..4255730 431..551 100 -> Plus
3L 4255800..4255927 552..681 98   Plus
3L 4254815..4254968 17..170 100 -> Plus
3L 4255036..4255295 171..430 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:22 Download gff for BO13411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4254815..4254968 17..170 100 -> Plus
arm_3L 4255036..4255295 171..430 100 -> Plus
arm_3L 4255610..4255730 431..551 100 -> Plus
arm_3L 4255800..4255927 552..681 98   Plus

BO13411.pep Sequence

Translation from 16 to 697

> BO13411.pep
MSGALGDVVSEYLERGPVLVVADLLSLITVSSCLVIKVPQINTIRANESS
KGISVLGLCLELFSYTVMLSYNYTSGYDFLSYMEYPVLLLQEYALIYYAF
KYQDLLGRRTQVVAILYSIVATLIYMKLFPIIILKFLVPFCTPIGATSKV
LQLLAILRTKDASSVSRTTWALSAFTNMTRIYTVFFQSHDWMLLSNFLIS
TFLSASVFTAACVYKKKAKAEASFLDH

BO13411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-PB 221 CG1265-PB 1..221 1..221 1100 100 Plus
CG3792-PA 252 CG3792-PA 41..232 25..217 175 24.5 Plus