Clone Sequence Records
BO13411.3prime Sequence
695 bp (694 high quality bases) assembled on 2006-05-08
> BO13411.3prime
ATGGTCTAGAAAGCTTGCCTCCGCCTTGGCCTTCTTCTTGTAGACGCAAG
CGGCGGTGAAAACGGAGGCGCTAAGGAACGTCGAAATCAGGAAGTTTGAT
AGCAACATCCAATCGTGGGACTGGAAGAACACCGTGTAGATTCGAGTCAT
GTTTGTAAAGGCGGAGAGCGCCCATGTGGTTCTACTGACGGAACTGGCAT
CCTTGGTCCTCAGAATAGCCAGCAGCTGGAGGACCTTACTCGTGGCTCCA
ATGGGAGTGCAGAAAGGCACCAGGAACTTAAGGATGATAATGGGAAAGAG
CTTCATGTATATGAGAGTGGCCACTATACTATACAGTATGGCCACCACTT
GCGTCCTCCTTCCCAGCAGATCCTGGTACTTGAAGGCGTAGTAAATCAGG
GCGTACTCCTGCAGCAGCAAAACAGGATACTCCATGTACGAGAGGAAGTC
GTAGCCACTGGTGTAGTTGTACGACAACATCACCGTATAACTGAACAGCT
CCAGGCACAGTCCCAAAACACTGATGCCTTTCGAGGACTCGTTCGCCCGT
ATCGTGTTTATCTGCGGAACCTTGATCACCAGGCAGGACGAGACCGTTAT
CAGGCTAAGGAGGTCCGCCACCACGAGCACTGGGCCGCGCTCCAGGTATT
CGGACACCACATCTCCGAGAGCTCCACTCATGTCGACTGATAACT
BO13411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-PB | 666 | CG1265-RB | 1..663 | 681..19 | 3315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 828 | CG1265-RB | 40..702 | 681..19 | 3315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4255034..4255295 | 529..268 | 1310 | 100 | Minus |
3L | 28110227 | 3L | 4254815..4254969 | 681..527 | 775 | 100 | Minus |
3L | 28110227 | 3L | 4255800..4255927 | 146..19 | 640 | 100 | Minus |
3L | 28110227 | 3L | 4255609..4255730 | 268..147 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:26:39 has no hits.
BO13411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:31 Download gff for
BO13411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-PB | 1..666 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:47:59 Download gff for
BO13411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-PB | 1..666 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:56 Download gff for
BO13411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..707 | 11..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:38 Download gff for
BO13411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..707 | 11..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:38 Download gff for
BO13411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4255610..4255730 | 147..267 | 100 | -> | Minus |
3L | 4255800..4255932 | 11..146 | 97 | | Minus |
3L | 4254809..4254968 | 528..687 | 98 | -> | Minus |
3L | 4255036..4255295 | 268..527 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:56 Download gff for
BO13411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4254809..4254968 | 528..687 | 98 | -> | Minus |
arm_3L | 4255036..4255295 | 268..527 | 100 | -> | Minus |
arm_3L | 4255610..4255730 | 147..267 | 100 | -> | Minus |
arm_3L | 4255800..4255932 | 11..146 | 97 | | Minus |
BO13411.5prime Sequence
695 bp (694 high quality bases) assembled on 2006-05-29
> BO13411.5prime
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGGCAAGCTTTCTAGACC
BO13411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-PB | 666 | CG1265-RB | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 828 | CG1265-RB | 40..702 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4255034..4255295 | 169..430 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4254815..4254969 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 4255800..4255927 | 552..679 | 640 | 100 | Plus |
3L | 28110227 | 3L | 4255609..4255730 | 430..551 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:41:18 has no hits.
BO13411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:32 Download gff for
BO13411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-PB | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:01 Download gff for
BO13411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-PB | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:33 Download gff for
BO13411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..707 | 11..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:46 Download gff for
BO13411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..707 | 11..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:46 Download gff for
BO13411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4254809..4254968 | 11..170 | 98 | -> | Plus |
3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
3L | 4255800..4255932 | 552..687 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:33 Download gff for
BO13411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4254809..4254968 | 11..170 | 98 | -> | Plus |
arm_3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
arm_3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
arm_3L | 4255800..4255932 | 552..687 | 97 | | Plus |
BO13411.complete Sequence
697 bp assembled on 2008-08-15
GenBank Submission: FJ632776
> BO13411.complete
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGGCAAGCTTTCTAGACCAT
BO13411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 666 | CG1265-PB | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 828 | CG1265-RB | 40..702 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4255034..4255295 | 169..430 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4254815..4254969 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 4255800..4255927 | 552..679 | 640 | 100 | Plus |
3L | 28110227 | 3L | 4255609..4255730 | 430..551 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:49:33 has no hits.
BO13411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:33 Download gff for
BO13411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 36..709 | 11..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:22 Download gff for
BO13411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 40..702 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:33 Download gff for
BO13411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 42..704 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:03 Download gff for
BO13411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 40..702 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:03 Download gff for
BO13411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
3L | 4255800..4255927 | 552..681 | 98 | | Plus |
3L | 4254815..4254968 | 17..170 | 100 | -> | Plus |
3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:22 Download gff for
BO13411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4254815..4254968 | 17..170 | 100 | -> | Plus |
arm_3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
arm_3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
arm_3L | 4255800..4255927 | 552..681 | 98 | | Plus |
BO13411.pep Sequence
Translation from 16 to 697
> BO13411.pep
MSGALGDVVSEYLERGPVLVVADLLSLITVSSCLVIKVPQINTIRANESS
KGISVLGLCLELFSYTVMLSYNYTSGYDFLSYMEYPVLLLQEYALIYYAF
KYQDLLGRRTQVVAILYSIVATLIYMKLFPIIILKFLVPFCTPIGATSKV
LQLLAILRTKDASSVSRTTWALSAFTNMTRIYTVFFQSHDWMLLSNFLIS
TFLSASVFTAACVYKKKAKAEASFLDH
BO13411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-PB | 221 | CG1265-PB | 1..221 | 1..221 | 1100 | 100 | Plus |
CG3792-PA | 252 | CG3792-PA | 41..232 | 25..217 | 175 | 24.5 | Plus |