Clone BO13415 Report

Search the DGRC for BO13415

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG32243-RA
Protein status:BO13415.pep: Imported from assembly
Sequenced Size:1489

Clone Sequence Records

BO13415.3prime Sequence

920 bp (846 high quality bases) assembled on 2006-05-08

> BO13415.3prime
ATGGTCTAGAAAGCTTGCAGTCGATTTGCATATGTCGTAGTATCCAGGAC
ATACTTCACATTTCTTTAAAAATTCAGCATAGGGATTCGGTCCAGTAGAA
ACAAAAAACATTCGTACGCGCCTCAAAATATCCGACGAATGCTCTTCAAT
TTCATTGAAGTCCCACTTTGGATGGTGCTTACTTATGCACAGTATTATCT
GATATAGAATGGATTCCGTGGGAAAATAATATTTTAGCATTTGGCACATT
TCCTCCCTCACAGTTTCCACAAATGTTTGCGTTAGCGCCATTATAAGCTT
AAAAGTGTCGACTTCCAAATGCTCTGACATTCTACTTATCAAAATGTCGA
AGCTCTCTGAGCTTGCAATATGTTTCTTGAGTTGGGTTCCGTATTCTCGC
AGGTTTATTTCCTGCCCCTTGACTTTAATAGATAAATCTATTTCTATTTC
TGGAAGATCACTTGGAGTATTTTCTGGTTTTTCAGCCTCCACAACCTTTT
TTGATTTCTTGATCTTGCTATCAATGGGCTGAAATATTTTATCCAGCTTC
GGTATTGAGGGCACTCCATTGCAACAACGAATGAGATTCACATTTCCCTC
AATTTTAAATGATTCCCTAGCAATCTTATCCCACGCCGATCGTTGCTGAT
TAACAAAAATGCTGGGATCATTATTATTATTATTCATCAGCGATTCAAGG
CGTGAATTGTACAGATTATTCGTAAATAATACTAAGGAATCGGATAGACC
AGCCACATCACCAGATTGTGTAGAACTATGAGGATTCAAAATCGACGAAA
GCATCTTTTCACTGGCGCAGAAGTCGAAAACCTCTTCAGGATAAACCAGA
AATGGAACTGAATGTATGATGATTTTTCTAAGGTTATTAGTCACACTGGA
TGCTTTTTTCAACGATTCGG

BO13415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 1458 CG32243-RA 554..1455 920..19 4485 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1639 CG32243-RA 630..1531 920..19 4495 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4539410..4540032 19..641 3115 100 Plus
3L 28110227 3L 4540085..4540231 641..787 735 100 Plus
3L 28110227 3L 4540295..4540428 787..920 655 99.3 Plus
Blast to na_te.dros performed on 2015-02-02 19:20:12 has no hits.

BO13415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:39 Download gff for BO13415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-PA 554..1458 15..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:11 Download gff for BO13415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-PA 554..1458 15..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:39 Download gff for BO13415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 630..1534 15..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:03 Download gff for BO13415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 630..1534 15..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:03 Download gff for BO13415.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4539406..4540031 15..640 99 <- Plus
3L 4540085..4540230 641..786 100 <- Plus
3L 4540295..4540428 787..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:39 Download gff for BO13415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4539406..4540031 15..640 99 <- Plus
arm_3L 4540085..4540230 641..786 100 <- Plus
arm_3L 4540295..4540428 787..920 99   Plus

BO13415.5prime Sequence

859 bp (841 high quality bases) assembled on 2006-05-29

> BO13415.5prime
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAATCGC
TGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCAACGA
TCGGCGTGG

BO13415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 1458 CG32243-RA 1..843 17..859 4215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1639 CG32243-RA 77..919 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4540295..4540654 703..344 1800 100 Minus
3L 28110227 3L 4540085..4540231 849..703 735 100 Minus
3L 28110227 3L 4540713..4540847 344..210 675 100 Minus
3L 28110227 3L 4541065..4541168 120..17 520 100 Minus
3L 28110227 3L 4540922..4541011 210..121 450 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:16:07 has no hits.

BO13415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:40 Download gff for BO13415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:12 Download gff for BO13415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:13:38 Download gff for BO13415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..919 17..859 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:00 Download gff for BO13415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..919 17..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:00 Download gff for BO13415.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4541065..4541168 17..120 100   Minus
3L 4540080..4540230 704..854 98 <- Minus
3L 4540295..4540653 345..703 100 <- Minus
3L 4540713..4540847 210..344 100 <- Minus
3L 4540923..4541011 121..209 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:13:38 Download gff for BO13415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4540080..4540230 704..854 98 <- Minus
arm_3L 4540295..4540653 345..703 100 <- Minus
arm_3L 4540713..4540847 210..344 100 <- Minus
arm_3L 4540923..4541011 121..209 100 <- Minus
arm_3L 4541065..4541168 17..120 100   Minus

BO13415.complete Sequence

1489 bp assembled on 2008-08-15

GenBank Submission: FJ632778

> BO13415.complete
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAATCGC
TGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCAACGA
TCGGCGTGGGATAAGATTGCTAGGGAATCATTTAAAATTGAGGGAAATGT
GAATCTCATTCGTTGTTGCAATGGAGTGCCCTCAATACCGAAGCTGGATA
AAATATTTCAGCCCATTGATAGCAAGATCAAGAAATCAAAAAAGGTTGTG
GAGGCTGAAAAACCAGAAAATACTCCAAGTGATCTTCCAGAAATAGAAAT
AGATTTATCTATTAAAGTCAAGGGGCAGGAAATAAACCTGCGAGAATACG
GAACCCAACTCAAGAAACATATTGCAAGCTCAGAGAGCTTCGACATTTTG
ATAAGTAGAATGTCAGAGCATTTGGAAGTCGACACTTTTAAGCTTATAAT
GGCGCTAACGCAAACATTTGTGGAAACTGTGAGGGAGGAAATGTGCCAAA
TGCTAAAATATTATTTTCCCACGGAATCCATTCTATATCAGATAATACTG
TGCATAAGTAAGCACCATCCAAAGTGGGACTTCAATGAAATTGAAGAGCA
TTCGTCGGATATTTTGAGGCGCGTACGAATGTTTTTTGTTTCTACTGGAC
CGAATCCCTATGCTGAATTTTTAAAGAAATGTGAAGTATGTCCTGGATAC
TACGACATATGCAAATCGACTGCAAGCTTTCTAGACCAT

BO13415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1458 CG32243-PA 1..1455 17..1471 7275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1639 CG32243-RA 77..1531 17..1471 7275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4539410..4540032 1471..849 3115 100 Minus
3L 28110227 3L 4540295..4540654 703..344 1800 100 Minus
3L 28110227 3L 4540085..4540231 849..703 735 100 Minus
3L 28110227 3L 4540713..4540847 344..210 675 100 Minus
3L 28110227 3L 4541065..4541168 120..17 520 100 Minus
3L 28110227 3L 4540922..4541011 210..121 450 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:41:48 has no hits.

BO13415.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:23 Download gff for BO13415.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 71..1528 17..1475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:50 Download gff for BO13415.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..1531 17..1473 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:16 Download gff for BO13415.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 71..1525 17..1473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:09 Download gff for BO13415.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..1531 17..1473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:09 Download gff for BO13415.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4539408..4540031 850..1473 99 <- Minus
3L 4540085..4540230 704..849 100 <- Minus
3L 4540295..4540653 345..703 100 <- Minus
3L 4540713..4540847 210..344 100 <- Minus
3L 4540923..4541011 121..209 100 <- Minus
3L 4541065..4541168 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:50 Download gff for BO13415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4539408..4540031 850..1473 99 <- Minus
arm_3L 4540085..4540230 704..849 100 <- Minus
arm_3L 4540295..4540653 345..703 100 <- Minus
arm_3L 4540713..4540847 210..344 100 <- Minus
arm_3L 4540923..4541011 121..209 100 <- Minus
arm_3L 4541065..4541168 17..120 100   Minus

BO13415.pep Sequence

Translation from 16 to 1489

> BO13415.pep
MSAPKGDGNLVPTVREVQQKFADILGHGNDITWDLISSGQENILKAKLSL
LNFDSNMFHAIWSYRKYSKGQSLTSLFFVMVVNNVYDPKLAEESRSWRLY
PVFRCRRCVDETGHSSNIDCCMSYVSQYSMSDSWNRFVTHTGFAAGLMVT
PYLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRK
IIIHSVPFLVYPEEVFDFCASEKMLSSILNPHSSTQSGDVAGLSDSLVLF
TNNLYNSRLESLMNNNNNDPSIFVNQQRSAWDKIARESFKIEGNVNLIRC
CNGVPSIPKLDKIFQPIDSKIKKSKKVVEAEKPENTPSDLPEIEIDLSIK
VKGQEINLREYGTQLKKHIASSESFDILISRMSEHLEVDTFKLIMALTQT
FVETVREEMCQMLKYYFPTESILYQIILCISKHHPKWDFNEIEEHSSDIL
RRVRMFFVSTGPNPYAEFLKKCEVCPGYYDICKSTASFLDH

BO13415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 485 CG32243-PA 1..485 1..485 2553 100 Plus
pst-PG 682 CG8588-PG 6..201 6..170 288 33.7 Plus
pst-PE 682 CG8588-PE 6..201 6..170 288 33.7 Plus
pst-PF 707 CG8588-PF 6..226 6..170 252 29.9 Plus
pst-PG 682 CG8588-PG 546..680 348..482 251 34.8 Plus
pst-PE 682 CG8588-PE 546..680 348..482 251 34.8 Plus
pst-PF 707 CG8588-PF 571..705 348..482 251 34.8 Plus
CG7730-PC 581 CG7730-PC 339..578 239..481 199 26.6 Plus