Clone Sequence Records
BO13415.3prime Sequence
920 bp (846 high quality bases) assembled on 2006-05-08
> BO13415.3prime
ATGGTCTAGAAAGCTTGCAGTCGATTTGCATATGTCGTAGTATCCAGGAC
ATACTTCACATTTCTTTAAAAATTCAGCATAGGGATTCGGTCCAGTAGAA
ACAAAAAACATTCGTACGCGCCTCAAAATATCCGACGAATGCTCTTCAAT
TTCATTGAAGTCCCACTTTGGATGGTGCTTACTTATGCACAGTATTATCT
GATATAGAATGGATTCCGTGGGAAAATAATATTTTAGCATTTGGCACATT
TCCTCCCTCACAGTTTCCACAAATGTTTGCGTTAGCGCCATTATAAGCTT
AAAAGTGTCGACTTCCAAATGCTCTGACATTCTACTTATCAAAATGTCGA
AGCTCTCTGAGCTTGCAATATGTTTCTTGAGTTGGGTTCCGTATTCTCGC
AGGTTTATTTCCTGCCCCTTGACTTTAATAGATAAATCTATTTCTATTTC
TGGAAGATCACTTGGAGTATTTTCTGGTTTTTCAGCCTCCACAACCTTTT
TTGATTTCTTGATCTTGCTATCAATGGGCTGAAATATTTTATCCAGCTTC
GGTATTGAGGGCACTCCATTGCAACAACGAATGAGATTCACATTTCCCTC
AATTTTAAATGATTCCCTAGCAATCTTATCCCACGCCGATCGTTGCTGAT
TAACAAAAATGCTGGGATCATTATTATTATTATTCATCAGCGATTCAAGG
CGTGAATTGTACAGATTATTCGTAAATAATACTAAGGAATCGGATAGACC
AGCCACATCACCAGATTGTGTAGAACTATGAGGATTCAAAATCGACGAAA
GCATCTTTTCACTGGCGCAGAAGTCGAAAACCTCTTCAGGATAAACCAGA
AATGGAACTGAATGTATGATGATTTTTCTAAGGTTATTAGTCACACTGGA
TGCTTTTTTCAACGATTCGG
BO13415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-PA | 1458 | CG32243-RA | 554..1455 | 920..19 | 4485 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1639 | CG32243-RA | 630..1531 | 920..19 | 4495 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4539410..4540032 | 19..641 | 3115 | 100 | Plus |
3L | 28110227 | 3L | 4540085..4540231 | 641..787 | 735 | 100 | Plus |
3L | 28110227 | 3L | 4540295..4540428 | 787..920 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:20:12 has no hits.
BO13415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:39 Download gff for
BO13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-PA | 554..1458 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:11 Download gff for
BO13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-PA | 554..1458 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:39 Download gff for
BO13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 630..1534 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:03 Download gff for
BO13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 630..1534 | 15..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:03 Download gff for
BO13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4539406..4540031 | 15..640 | 99 | <- | Plus |
3L | 4540085..4540230 | 641..786 | 100 | <- | Plus |
3L | 4540295..4540428 | 787..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:39 Download gff for
BO13415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4539406..4540031 | 15..640 | 99 | <- | Plus |
arm_3L | 4540085..4540230 | 641..786 | 100 | <- | Plus |
arm_3L | 4540295..4540428 | 787..920 | 99 | | Plus |
BO13415.5prime Sequence
859 bp (841 high quality bases) assembled on 2006-05-29
> BO13415.5prime
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAATCGC
TGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCAACGA
TCGGCGTGG
BO13415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-PA | 1458 | CG32243-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1639 | CG32243-RA | 77..919 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:16:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4540295..4540654 | 703..344 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 4540085..4540231 | 849..703 | 735 | 100 | Minus |
3L | 28110227 | 3L | 4540713..4540847 | 344..210 | 675 | 100 | Minus |
3L | 28110227 | 3L | 4541065..4541168 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 4540922..4541011 | 210..121 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:16:07 has no hits.
BO13415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:40 Download gff for
BO13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:12 Download gff for
BO13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:13:38 Download gff for
BO13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..919 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:00 Download gff for
BO13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..919 | 17..859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:00 Download gff for
BO13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4541065..4541168 | 17..120 | 100 | | Minus |
3L | 4540080..4540230 | 704..854 | 98 | <- | Minus |
3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:13:38 Download gff for
BO13415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4540080..4540230 | 704..854 | 98 | <- | Minus |
arm_3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
arm_3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
arm_3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
arm_3L | 4541065..4541168 | 17..120 | 100 | | Minus |
BO13415.complete Sequence
1489 bp assembled on 2008-08-15
GenBank Submission: FJ632778
> BO13415.complete
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAATCGC
TGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCAACGA
TCGGCGTGGGATAAGATTGCTAGGGAATCATTTAAAATTGAGGGAAATGT
GAATCTCATTCGTTGTTGCAATGGAGTGCCCTCAATACCGAAGCTGGATA
AAATATTTCAGCCCATTGATAGCAAGATCAAGAAATCAAAAAAGGTTGTG
GAGGCTGAAAAACCAGAAAATACTCCAAGTGATCTTCCAGAAATAGAAAT
AGATTTATCTATTAAAGTCAAGGGGCAGGAAATAAACCTGCGAGAATACG
GAACCCAACTCAAGAAACATATTGCAAGCTCAGAGAGCTTCGACATTTTG
ATAAGTAGAATGTCAGAGCATTTGGAAGTCGACACTTTTAAGCTTATAAT
GGCGCTAACGCAAACATTTGTGGAAACTGTGAGGGAGGAAATGTGCCAAA
TGCTAAAATATTATTTTCCCACGGAATCCATTCTATATCAGATAATACTG
TGCATAAGTAAGCACCATCCAAAGTGGGACTTCAATGAAATTGAAGAGCA
TTCGTCGGATATTTTGAGGCGCGTACGAATGTTTTTTGTTTCTACTGGAC
CGAATCCCTATGCTGAATTTTTAAAGAAATGTGAAGTATGTCCTGGATAC
TACGACATATGCAAATCGACTGCAAGCTTTCTAGACCAT
BO13415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1458 | CG32243-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1639 | CG32243-RA | 77..1531 | 17..1471 | 7275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4539410..4540032 | 1471..849 | 3115 | 100 | Minus |
3L | 28110227 | 3L | 4540295..4540654 | 703..344 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 4540085..4540231 | 849..703 | 735 | 100 | Minus |
3L | 28110227 | 3L | 4540713..4540847 | 344..210 | 675 | 100 | Minus |
3L | 28110227 | 3L | 4541065..4541168 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 4540922..4541011 | 210..121 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:41:48 has no hits.
BO13415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:23 Download gff for
BO13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 71..1528 | 17..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:50 Download gff for
BO13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..1531 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:16 Download gff for
BO13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 71..1525 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:09 Download gff for
BO13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..1531 | 17..1473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:09 Download gff for
BO13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4539408..4540031 | 850..1473 | 99 | <- | Minus |
3L | 4540085..4540230 | 704..849 | 100 | <- | Minus |
3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
3L | 4541065..4541168 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:50 Download gff for
BO13415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4539408..4540031 | 850..1473 | 99 | <- | Minus |
arm_3L | 4540085..4540230 | 704..849 | 100 | <- | Minus |
arm_3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
arm_3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
arm_3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
arm_3L | 4541065..4541168 | 17..120 | 100 | | Minus |
BO13415.pep Sequence
Translation from 16 to 1489
> BO13415.pep
MSAPKGDGNLVPTVREVQQKFADILGHGNDITWDLISSGQENILKAKLSL
LNFDSNMFHAIWSYRKYSKGQSLTSLFFVMVVNNVYDPKLAEESRSWRLY
PVFRCRRCVDETGHSSNIDCCMSYVSQYSMSDSWNRFVTHTGFAAGLMVT
PYLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRK
IIIHSVPFLVYPEEVFDFCASEKMLSSILNPHSSTQSGDVAGLSDSLVLF
TNNLYNSRLESLMNNNNNDPSIFVNQQRSAWDKIARESFKIEGNVNLIRC
CNGVPSIPKLDKIFQPIDSKIKKSKKVVEAEKPENTPSDLPEIEIDLSIK
VKGQEINLREYGTQLKKHIASSESFDILISRMSEHLEVDTFKLIMALTQT
FVETVREEMCQMLKYYFPTESILYQIILCISKHHPKWDFNEIEEHSSDIL
RRVRMFFVSTGPNPYAEFLKKCEVCPGYYDICKSTASFLDH
BO13415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-PA | 485 | CG32243-PA | 1..485 | 1..485 | 2553 | 100 | Plus |
pst-PG | 682 | CG8588-PG | 6..201 | 6..170 | 288 | 33.7 | Plus |
pst-PE | 682 | CG8588-PE | 6..201 | 6..170 | 288 | 33.7 | Plus |
pst-PF | 707 | CG8588-PF | 6..226 | 6..170 | 252 | 29.9 | Plus |
pst-PG | 682 | CG8588-PG | 546..680 | 348..482 | 251 | 34.8 | Plus |
pst-PE | 682 | CG8588-PE | 546..680 | 348..482 | 251 | 34.8 | Plus |
pst-PF | 707 | CG8588-PF | 571..705 | 348..482 | 251 | 34.8 | Plus |
CG7730-PC | 581 | CG7730-PC | 339..578 | 239..481 | 199 | 26.6 | Plus |