Clone Sequence Records
BO13419.3prime Sequence
909 bp (740 high quality bases) assembled on 2006-05-08
> BO13419.3prime
ATGGTCTAGAAAGCTTGCAGGTCTTGAATTGTCCGAAAGATTGATGTATT
TTCCCTTCTGCAGGGAAATTTTCTTGGGCAGGCTGATGAACTCTCCTCCG
TTGGTACATTTCGTCGGGGATTCCGGGAAATCTGCCTTAGCGTAAAAGCT
TTTCTTGCGGTATGGCAACTTTCGGCGATCGGGTTCAACCCGTTTCATGG
GGTCCAGCGTCATAAACTTGCCCTCCAGAAGACGTCGTTCCTGTTGGGTA
GACGGCACTTTGCTTTTGAATCCAGAAAAGAGGCCGTGGGAACTCATGTG
CGACATTAAGCGCGCCCACACTCGATAACTTGAGGTGCAGTCCTTATATG
GGCACTCATAAAATCGCTGCTGCGTGAATTTGACTTTATGGCTCCTCGTG
TGCCTCCTGTAGGATCCTTGGTTAGCGAAGGACATGTTGCACTCCACGCA
GATGAAATCGGATACATTGTGAACGCTGTTCTCGTGGCGGATAACGTCGA
AATAGCGTGGGAATATCTGGTTGCATCTGAGGCACAGAAATTCCAAATCC
TTTGCGCCGCACATGGTCTTGTTGTGTTTCATCGTCTTCATGTGCTCATG
TAGTTCGTGTAGTTTGTGGAACTCTGAACCACAATCGCGGCAATAGTAGA
CCGGATTCGGGCGGGGTTTACAAGAATGCATGCGTATGTGGGTCAGGATT
TCGAGCACATGGCCGCAACAGGTGCACAGCATCCGAGTGGCTTGGGTCTT
GTCCTTGAAGAACTTGGTGACTGCCAAGCCATCGCGTGACAATCCCACGC
TGAAGAAATCCACGGACGCGGTTTTCAAAGATTCTTCGACTACGATCTCC
ATATGCTCGTTTTTTTCCAATGGATCTTCCCTCACTGGCTCCGCGATATG
CTGATCGAA
BO13419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6215-PA | 1233 | CkIIalpha-i1-RA | 340..1230 | 909..19 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1585 | CG6215-RA | 409..1299 | 909..19 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15817445..15818335 | 909..19 | 4440 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 16:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib3 | 2883 | transib3 TRANSIB3 2883bp | 1633..1677 | 14..58 | 108 | 71.1 | Plus |
BO13419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:47 Download gff for
BO13419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6215-PA | 342..1233 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:22 Download gff for
BO13419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6215-PA | 342..1233 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:57 Download gff for
BO13419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 409..1304 | 11..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:32 Download gff for
BO13419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 409..1304 | 11..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:32 Download gff for
BO13419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15817445..15818340 | 11..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:57 Download gff for
BO13419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15810545..15811440 | 11..909 | 99 | | Minus |
BO13419.5prime Sequence
938 bp (816 high quality bases) assembled on 2006-05-30
> BO13419.5prime
GAAGTTATCAGTCGACATGACAGAAGCGGAAATTTGCAAACTATGCAAGG
ATAACCGAGCAATTGAGATCGATCTCGAGAAGCCCAAATTCAAATCGGCC
AATAAACTGCTGCAAAGACTTTTCGATTGGTACAAAATTGATGCTGCTAT
CCTGGGGGAAAATTACTGCATTTGCGAGCCCTGCTTTGGAGAGACTTTGC
GCATAAGCGAATCCCTGGAGAAGTGGGGCACGGCCCAGGACGAGTTTCAC
CGGAGGCCCATCGAAATAGACGACTCCACTGCATTTCAGATCAAGTTGGA
GGTGACATCAAACAAAGAAGAGGTAGAAACGGAAAAGAATGATGAGGAGA
ATTCTTTCGATCAGCATATCGCGGAGCCAGTGAAGGAAGATCCATTGGAA
AAAAACGAGCATATGGAGATCGTAGTCGAAGAATCTTTGAAAACCGCGTC
CGTGGATTTCTTCAGCGTGGGATTGTCACGCGATGGCTTGGCAGTCACCA
AGTTCTTCAAGGACAAGACCCAAGCCACTCGGATGCTGTGCACCTGTTGC
GGCCATGTGCTCGAAATCCTGACCCACATACGCATGCATTCTTGTAAACC
CCGCCCGAATCCGGTCTACTATTGCCGCGATTGTGGTTCAGAGTTCCACA
AACTACACGAACTACATGAGCACATGAAGACGATGAAACACAACAAGACC
ATGTGCGGCGCAAAGGATTTGGAATTTCTGTGCCTCAGATGCAACCAGAT
ATTCCCACGCTATTTCGACGTTATCCGCCACGAGAACAGCGTTCACAATG
TATCCGATTTCATCTGCGTGGAGTGCAACATGTCCTTCGCTAACCAAGGA
TCCTACAGGAGGCACACGAAGAGCCATAAAGTCAAATTCACGCAGCAGCG
ATTTTATGAGTGCCCATATAAGGACTGCACCTCAAGTT
BO13419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6215-PA | 1233 | CkIIalpha-i1-RA | 1..922 | 17..938 | 4585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1585 | CG6215-RA | 70..991 | 17..938 | 4595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15817232..15818027 | 143..938 | 3965 | 99.9 | Plus |
| 3L | 28110227 | 3L | 15817048..15817174 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:16:08 has no hits.
BO13419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:02:48 Download gff for
BO13419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6215-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:24 Download gff for
BO13419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6215-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:04 Download gff for
BO13419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 55..991 | 1..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:01 Download gff for
BO13419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 55..991 | 1..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:01 Download gff for
BO13419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15817033..15817173 | 1..142 | 96 | -> | Plus |
| 3L | 15817232..15818027 | 143..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:04 Download gff for
BO13419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15810133..15810273 | 1..142 | 96 | -> | Plus |
| arm_3L | 15810332..15811127 | 143..938 | 99 | | Plus |
BO13419.complete Sequence
1264 bp assembled on 2006-10-11
GenBank Submission: FJ632779
> BO13419.complete
GAAGTTATCAGTCGACATGACAGAAGCGGAAATTTGCAAACTATGCAAGG
ATAACCGAGCAATTGAGATCGATCTCGAGAAGCCCAAATTCAAATCGGCC
AATAAACTGCTGCAAAGACTTTTCGATTGGTACAAAATTGATGCTGCTAT
CCTGGGGGAAAATTACTGCATTTGCGAGCCCTGCTTTGGAGAGACTTTGC
GCATAAGCGAATCCCTGGAGAAGTGGGGCACGGCCCAGGACGAGTTTCAC
CGGAGGCCCATCGAAATAGACGACTCCACTGCATTTCAGATCAAGTTGGA
GGTGACATCAAACAAAGAAGAGGTAGAAACGGAAAAGAATGATGAGGAGA
ATTCTTTCGATCAGCATATCGCGGAGCCAGTGAAGGAAGATCCATTGGAA
AAAAACGAGCATATGGAGATCGTAGTCGAAGAATCTTTGAAAACCGCGTC
CGTGGATTTCTTCAGCGTGGGATTGTCACGCGATGGCTTGGCAGTCACCA
AGTTCTTCAAGGACAAGACCCAAGCCACTCGGATGCTGTGCACCTGTTGC
GGCCATGTGCTCGAAATCCTGACCCACATACGCATGCATTCTTGTAAACC
CCGCCCGAATCCGGTCTACTATTGCCGCGATTGTGGTTCAGAGTTCCACA
AACTACACGAACTACATGAGCACATGAAGACGATGAAACACAACAAGACC
ATGTGCGGCGCAAAGGATTTGGAATTTCTGTGCCTCAGATGCAACCAGAT
ATTCCCACGCTATTTCGACGTTATCCGCCACGAGAACAGCGTTCACAATG
TATCCGATTTCATCTGCGTGGAGTGCAACATGTCCTTCGCTAACCAAGGA
TCCTACAGGAGGCACACGAGGAGCCATAAAGTCAAATTCACGCAGCAGCG
ATTTTATGAGTGCCCATATAAGGACTGCACCTCAAGTTATCGAGTGTGGG
CGCGCTTAATGTCGCACATGAGTTCCCACGGCCTCTTTTCTGGATTCAAA
AGCAAAGTGCCGTCTACCCAACAGGAACGACGTCTTCTGGAGGGCAAGTT
TATGACGCTGGACCCCATGAAACGGGTTGAACCCGATCGCCGAAAGTTGC
CATACCGCAAGAAAAGCTTTTACGCTAAGGCAGATTTCCCGGAATCCCCG
ACGAAATGTACCAACGGAGGAGAGTTCATCAGCCTGCCCAAGAAAATTTC
CCTGCAGAAGGGAAAATACATCAATCTTTCGGACAATTCAAGACCTGCAA
GCTTTCTAGACCAT
BO13419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1233 | CG6215-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1585 | CG6215-RA | 70..1299 | 17..1246 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15817232..15818335 | 143..1246 | 5520 | 100 | Plus |
| 3L | 28110227 | 3L | 15817048..15817174 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:22:50 has no hits.
BO13419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:33 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 1..1233 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:52 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 41..1290 | 1..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:04 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 70..1299 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:33 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 41..1290 | 1..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:33 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 70..1299 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:33 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15817048..15817173 | 17..142 | 100 | -> | Plus |
| 3L | 15817232..15818335 | 143..1248 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:04 Download gff for
BO13419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15810148..15810273 | 17..142 | 100 | -> | Plus |
| arm_3L | 15810332..15811435 | 143..1248 | 99 | | Plus |
BO13419.pep Sequence
Translation from 16 to 1264
> BO13419.pep
MTEAEICKLCKDNRAIEIDLEKPKFKSANKLLQRLFDWYKIDAAILGENY
CICEPCFGETLRISESLEKWGTAQDEFHRRPIEIDDSTAFQIKLEVTSNK
EEVETEKNDEENSFDQHIAEPVKEDPLEKNEHMEIVVEESLKTASVDFFS
VGLSRDGLAVTKFFKDKTQATRMLCTCCGHVLEILTHIRMHSCKPRPNPV
YYCRDCGSEFHKLHELHEHMKTMKHNKTMCGAKDLEFLCLRCNQIFPRYF
DVIRHENSVHNVSDFICVECNMSFANQGSYRRHTRSHKVKFTQQRFYECP
YKDCTSSYRVWARLMSHMSSHGLFSGFKSKVPSTQQERRLLEGKFMTLDP
MKRVEPDRRKLPYRKKSFYAKADFPESPTKCTNGGEFISLPKKISLQKGK
YINLSDNSRPASFLDH
BO13419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-PA | 410 | CG6215-PA | 1..410 | 1..410 | 2218 | 100 | Plus |
| CG1792-PA | 372 | CG1792-PA | 53..332 | 52..322 | 162 | 24.7 | Plus |
