Clone BO13432 Report

Search the DGRC for BO13432

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG4306-RA
Protein status:BO13432.pep: validated full length
Sequenced Size:694

Clone Sequence Records

BO13432.3prime Sequence

692 bp (691 high quality bases) assembled on 2006-05-08

> BO13432.3prime
ATGGTCTAGAAAGCTTGCAAGGGTTACCCCTCCCAGTTCCAGTTTTCGTT
CCAGATAGGAGTTAACTTGTCCATTATGCTTAATGCTCCTCAATCGCTGA
ACATAATCCTCCGGAACGGAGCTCTCAATAGCGCCTTTAACGAGACATTG
CAGATATGTTTTCGAGGGCTGTCTGGATAAGGGAATGGAGTCCTTAGGCA
GTTCGTACAGATTGCTCTCTGGCTGCTTGGTCAGTAGATAAGCTCGGGCA
GGAGTTGATTCAGATTCCCCATGGAGTTTTACGTAAACGGTGCGAGGCTC
ATAAATGCCTTGACTAACGCCTTCTTGACTGTCTATATCCGGCAGATTAC
TTAGATCGATCTTCCAGAGGGTTCCCCAGACATGATCACCCTGGGTGGGA
ACGATGGTGGCCACAGAACCGCTCCAACCGGCTGATTCCAAGGCAAAGTC
CAATCGATAATCGGGTAGCAGGGCCGGACCAATTCTTACCGCCGAAGGGT
TCTGGATGTGAATTCTCTTGATCAGCATATTGCTTCCGAATCCAAAGTAC
AGGAACTGGTCACCTCGAATCTCTGGTAGATTCAAGGTGGAATTTAAACC
ACTGATGCTGTGGCAATTTCCTTTGGGGAGAGCTACCAATAGGCAGCTTA
GAACACCGATAAGACACTCGTAGTTCATGTCGACTGATAACT

BO13432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-PA 663 CG4306-RA 1..660 678..19 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 1029 CG4306-RA 96..755 678..19 3300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18462719..18463068 329..678 1750 100 Plus
3L 28110227 3L 18462231..18462543 19..331 1565 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:41:14 has no hits.

BO13432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:11 Download gff for BO13432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-PA 1..663 15..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:56 Download gff for BO13432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-PA 1..663 15..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:53 Download gff for BO13432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 88..759 14..690 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:29 Download gff for BO13432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 88..759 14..690 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:29 Download gff for BO13432.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18462227..18462540 14..328 99 <- Plus
3L 18462719..18463075 329..690 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:53 Download gff for BO13432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18455327..18455640 14..328 99 <- Plus
arm_3L 18455819..18456175 329..690 98   Plus

BO13432.5prime Sequence

692 bp (691 high quality bases) assembled on 2006-05-30

> BO13432.5prime
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAGGGGTAACCCTTGCAAGCTTTCTAGACC

BO13432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-PA 663 CG4306-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 1029 CG4306-RA 96..755 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18462719..18463068 366..17 1750 100 Minus
3L 28110227 3L 18462231..18462543 676..364 1565 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:20:53 has no hits.

BO13432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:12 Download gff for BO13432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-PA 1..663 17..680 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:58 Download gff for BO13432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-PA 1..663 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:40 Download gff for BO13432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 88..759 5..681 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:51:09 Download gff for BO13432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 88..759 5..681 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:51:09 Download gff for BO13432.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18462227..18462540 367..681 99 <- Minus
3L 18462719..18463075 5..366 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:40 Download gff for BO13432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18455327..18455640 367..681 99 <- Minus
arm_3L 18455819..18456175 5..366 98   Minus

BO13432.complete Sequence

694 bp assembled on 2006-10-11

GenBank Submission: FJ632780

> BO13432.complete
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAGGGGTAACCCTTGCAAGCTTTCTAGACCAT

BO13432.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 663 CG4306-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 1029 CG4306-RA 96..755 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18462719..18463068 366..17 1750 100 Minus
3L 28110227 3L 18462231..18462543 676..364 1565 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:48:50 has no hits.

BO13432.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:34 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 1..663 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:13 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 82..753 5..681 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:23 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 96..755 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:34 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 82..753 5..681 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:12 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 96..755 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:12 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18462229..18462540 367..678 99 <- Minus
3L 18462719..18463068 17..366 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:23 Download gff for BO13432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18455329..18455640 367..678 99 <- Minus
arm_3L 18455819..18456168 17..366 100   Minus

BO13432.pep Sequence

Translation from 16 to 694

> BO13432.pep
MNYECLIGVLSCLLVALPKGNCHSISGLNSTLNLPEIRGDQFLYFGFGSN
MLIKRIHIQNPSAVRIGPALLPDYRLDFALESAGWSGSVATIVPTQGDHV
WGTLWKIDLSNLPDIDSQEGVSQGIYEPRTVYVKLHGESESTPARAYLLT
KQPESNLYELPKDSIPLSRQPSKTYLQCLVKGAIESSVPEDYVQRLRSIK
HNGQVNSYLERKLELGGVTLASFLDH

BO13432.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-PA 220 CG4306-PA 1..220 1..220 1149 100 Plus
CG32196-PB 195 CG32196-PB 15..195 42..221 480 54.1 Plus
CG32196-PC 154 CG32196-PC 3..154 71..221 372 50.7 Plus