Clone Sequence Records
BO13432.3prime Sequence
692 bp (691 high quality bases) assembled on 2006-05-08
> BO13432.3prime
ATGGTCTAGAAAGCTTGCAAGGGTTACCCCTCCCAGTTCCAGTTTTCGTT
CCAGATAGGAGTTAACTTGTCCATTATGCTTAATGCTCCTCAATCGCTGA
ACATAATCCTCCGGAACGGAGCTCTCAATAGCGCCTTTAACGAGACATTG
CAGATATGTTTTCGAGGGCTGTCTGGATAAGGGAATGGAGTCCTTAGGCA
GTTCGTACAGATTGCTCTCTGGCTGCTTGGTCAGTAGATAAGCTCGGGCA
GGAGTTGATTCAGATTCCCCATGGAGTTTTACGTAAACGGTGCGAGGCTC
ATAAATGCCTTGACTAACGCCTTCTTGACTGTCTATATCCGGCAGATTAC
TTAGATCGATCTTCCAGAGGGTTCCCCAGACATGATCACCCTGGGTGGGA
ACGATGGTGGCCACAGAACCGCTCCAACCGGCTGATTCCAAGGCAAAGTC
CAATCGATAATCGGGTAGCAGGGCCGGACCAATTCTTACCGCCGAAGGGT
TCTGGATGTGAATTCTCTTGATCAGCATATTGCTTCCGAATCCAAAGTAC
AGGAACTGGTCACCTCGAATCTCTGGTAGATTCAAGGTGGAATTTAAACC
ACTGATGCTGTGGCAATTTCCTTTGGGGAGAGCTACCAATAGGCAGCTTA
GAACACCGATAAGACACTCGTAGTTCATGTCGACTGATAACT
BO13432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-PA | 663 | CG4306-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 1029 | CG4306-RA | 96..755 | 678..19 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18462719..18463068 | 329..678 | 1750 | 100 | Plus |
3L | 28110227 | 3L | 18462231..18462543 | 19..331 | 1565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:41:14 has no hits.
BO13432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:11 Download gff for
BO13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-PA | 1..663 | 15..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:56 Download gff for
BO13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-PA | 1..663 | 15..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:53 Download gff for
BO13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 88..759 | 14..690 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:29 Download gff for
BO13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 88..759 | 14..690 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:29 Download gff for
BO13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18462227..18462540 | 14..328 | 99 | <- | Plus |
3L | 18462719..18463075 | 329..690 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:53 Download gff for
BO13432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18455327..18455640 | 14..328 | 99 | <- | Plus |
arm_3L | 18455819..18456175 | 329..690 | 98 | | Plus |
BO13432.5prime Sequence
692 bp (691 high quality bases) assembled on 2006-05-30
> BO13432.5prime
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAGGGGTAACCCTTGCAAGCTTTCTAGACC
BO13432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-PA | 663 | CG4306-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 1029 | CG4306-RA | 96..755 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18462719..18463068 | 366..17 | 1750 | 100 | Minus |
3L | 28110227 | 3L | 18462231..18462543 | 676..364 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:20:53 has no hits.
BO13432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:12 Download gff for
BO13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-PA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:48:58 Download gff for
BO13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-PA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:40 Download gff for
BO13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 88..759 | 5..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:51:09 Download gff for
BO13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 88..759 | 5..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:51:09 Download gff for
BO13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18462227..18462540 | 367..681 | 99 | <- | Minus |
3L | 18462719..18463075 | 5..366 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:40 Download gff for
BO13432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18455327..18455640 | 367..681 | 99 | <- | Minus |
arm_3L | 18455819..18456175 | 5..366 | 98 | | Minus |
BO13432.complete Sequence
694 bp assembled on 2006-10-11
GenBank Submission: FJ632780
> BO13432.complete
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAGGGGTAACCCTTGCAAGCTTTCTAGACCAT
BO13432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 663 | CG4306-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 1029 | CG4306-RA | 96..755 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18462719..18463068 | 366..17 | 1750 | 100 | Minus |
3L | 28110227 | 3L | 18462231..18462543 | 676..364 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:48:50 has no hits.
BO13432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:34 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:13 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 82..753 | 5..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:23 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 96..755 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:34 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 82..753 | 5..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:12 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 96..755 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:12 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18462229..18462540 | 367..678 | 99 | <- | Minus |
3L | 18462719..18463068 | 17..366 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:23 Download gff for
BO13432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18455329..18455640 | 367..678 | 99 | <- | Minus |
arm_3L | 18455819..18456168 | 17..366 | 100 | | Minus |
BO13432.pep Sequence
Translation from 16 to 694
> BO13432.pep
MNYECLIGVLSCLLVALPKGNCHSISGLNSTLNLPEIRGDQFLYFGFGSN
MLIKRIHIQNPSAVRIGPALLPDYRLDFALESAGWSGSVATIVPTQGDHV
WGTLWKIDLSNLPDIDSQEGVSQGIYEPRTVYVKLHGESESTPARAYLLT
KQPESNLYELPKDSIPLSRQPSKTYLQCLVKGAIESSVPEDYVQRLRSIK
HNGQVNSYLERKLELGGVTLASFLDH
BO13432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-PA | 220 | CG4306-PA | 1..220 | 1..220 | 1149 | 100 | Plus |
CG32196-PB | 195 | CG32196-PB | 15..195 | 42..221 | 480 | 54.1 | Plus |
CG32196-PC | 154 | CG32196-PC | 3..154 | 71..221 | 372 | 50.7 | Plus |