Clone Sequence Records
BO13434.3prime Sequence
533 bp (532 high quality bases) assembled on 2006-05-08
> BO13434.3prime
ATGGTCTAGAAAGCTTGCCGCCGGTAAACCAAGAGTTTTGCGCACCAGCC
GTCGGGCGATGGCGTTGAACTCATCCCTCTGTTCGCGCCACATAATTGCT
GCATCCACATTAGCGCCGCTCTCATCGTTGGGTTCCGCCAGCATGCTGAC
CACACTAAGCAAAATCTTCTCCACGCTCTGGACAGGACTCCAGCGCTCCG
CGGATAGCTCGTAGCCCATGGGATCGTCGCCGGGTGCGTGTAGTATTGAT
ATGCAGACCCGCCCGTCGGCGAATATGTTGGGATGGAACATGTCACAAGT
GAATTTCATTTTAGGCGGACTCAGAGGATAGTCGGTCGGAAAGATGAGCC
GGGCAGGAAACACTCCGCCCTCGAAACAAGTGCCCTCAGGTCCGGCAATC
AGTGCCTCCCACTCGAAGAAGTTGTCCTCGCTGATGGGGCCGGCCACAAT
GCCCTCGGGCGGGTCAAGTGTTAACTGTTTGTATTCCGCCATCAGGCGGC
GCAGTGCGGACCCAGCCATGTCGACTGATAACT
BO13434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4443-PA | 504 | crl-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 1886 | CG4443-RB | 325..825 | 519..19 | 2505 | 100 | Minus |
Ubc7-RA | 1435 | CG4443-RA | 325..825 | 519..19 | 2505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16594271..16594530 | 394..135 | 1300 | 100 | Minus |
X | 23542271 | X | 16594690..16594806 | 135..19 | 585 | 100 | Minus |
X | 23542271 | X | 16594106..16594187 | 476..395 | 410 | 100 | Minus |
X | 23542271 | X | 16594001..16594043 | 519..477 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:55 has no hits.
BO13434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:16 Download gff for
BO13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-PA | 1..504 | 15..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:01 Download gff for
BO13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4443-PA | 1..504 | 15..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:00 Download gff for
BO13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 325..828 | 15..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:12 Download gff for
BO13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc7-RA | 325..828 | 15..519 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:12 Download gff for
BO13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16594001..16594043 | 477..519 | 100 | -> | Minus |
X | 16594106..16594187 | 395..476 | 100 | -> | Minus |
X | 16594271..16594530 | 135..394 | 100 | -> | Minus |
X | 16594691..16594809 | 15..134 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:00 Download gff for
BO13434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16488034..16488076 | 477..519 | 100 | -> | Minus |
arm_X | 16488139..16488220 | 395..476 | 100 | -> | Minus |
arm_X | 16488304..16488563 | 135..394 | 100 | -> | Minus |
arm_X | 16488724..16488842 | 15..134 | 98 | | Minus |
BO13434.5prime Sequence
533 bp (532 high quality bases) assembled on 2006-05-29
> BO13434.5prime
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGGCAAGCTTTCTAGACC
BO13434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4443-PA | 504 | crl-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 1886 | CG4443-RB | 325..825 | 17..517 | 2505 | 100 | Plus |
Ubc7-RA | 1435 | CG4443-RA | 325..825 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16594271..16594530 | 142..401 | 1300 | 100 | Plus |
X | 23542271 | X | 16594690..16594806 | 401..517 | 585 | 100 | Plus |
X | 23542271 | X | 16594106..16594187 | 60..141 | 410 | 100 | Plus |
X | 23542271 | X | 16594001..16594043 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:18:23 has no hits.
BO13434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:17 Download gff for
BO13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-PA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:03 Download gff for
BO13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4443-PA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:12 Download gff for
BO13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 325..828 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:05 Download gff for
BO13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc7-RA | 325..828 | 17..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:05 Download gff for
BO13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16594001..16594043 | 17..59 | 100 | -> | Plus |
X | 16594106..16594187 | 60..141 | 100 | -> | Plus |
X | 16594271..16594530 | 142..401 | 100 | -> | Plus |
X | 16594691..16594809 | 402..521 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:12 Download gff for
BO13434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16488139..16488220 | 60..141 | 100 | -> | Plus |
arm_X | 16488034..16488076 | 17..59 | 100 | -> | Plus |
arm_X | 16488304..16488563 | 142..401 | 100 | -> | Plus |
arm_X | 16488724..16488842 | 402..521 | 98 | | Plus |
BO13434.complete Sequence
535 bp assembled on 2006-10-11
GenBank Submission: FJ632781
> BO13434.complete
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGGCAAGCTTTCTAGACCAT
BO13434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 504 | CG4443-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
Ubc7-RA | 504 | CG4443-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 1886 | CG4443-RB | 325..825 | 17..517 | 2505 | 100 | Plus |
Ubc7-RA | 1435 | CG4443-RA | 325..825 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16594271..16594530 | 142..401 | 1300 | 100 | Plus |
X | 23542271 | X | 16594690..16594806 | 401..517 | 585 | 100 | Plus |
X | 23542271 | X | 16594106..16594187 | 60..141 | 410 | 100 | Plus |
X | 23542271 | X | 16594001..16594043 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:44:31 has no hits.
BO13434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:36 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:53 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 323..826 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:29:56 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 325..825 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:36 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 323..826 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:29 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc7-RA | 325..825 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:29 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16594691..16594806 | 402..519 | 98 | | Plus |
X | 16594001..16594043 | 17..59 | 100 | -> | Plus |
X | 16594106..16594187 | 60..141 | 100 | -> | Plus |
X | 16594271..16594530 | 142..401 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:29:56 Download gff for
BO13434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16488304..16488563 | 142..401 | 100 | -> | Plus |
arm_X | 16488724..16488839 | 402..519 | 98 | | Plus |
arm_X | 16488034..16488076 | 17..59 | 100 | -> | Plus |
arm_X | 16488139..16488220 | 60..141 | 100 | -> | Plus |
BO13434.pep Sequence
Translation from 16 to 535
> BO13434.pep
MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAGPEGTCFE
GGVFPARLIFPTDYPLSPPKMKFTCDMFHPNIFADGRVCISILHAPGDDP
MGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAAIMWREQRDE
FNAIARRLVRKTLGLPAASFLDH
BO13434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-PB | 167 | CG4443-PB | 1..167 | 1..167 | 882 | 100 | Plus |
Ubc7-PA | 167 | CG4443-PA | 1..167 | 1..167 | 882 | 100 | Plus |
CG40045-PA | 168 | CG40045-PA | 10..163 | 9..162 | 451 | 55.8 | Plus |
CG40045-PD | 167 | CG40045-PD | 10..162 | 9..162 | 437 | 55.8 | Plus |
Ubc87F-PA | 168 | CG9602-PA | 10..163 | 9..162 | 437 | 55.2 | Plus |