Clone BO13434 Report

Search the DGRC for BO13434

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptcrl-RA
Protein status:BO13434.pep: validated full length
Sequenced Size:535

Clone Sequence Records

BO13434.3prime Sequence

533 bp (532 high quality bases) assembled on 2006-05-08

> BO13434.3prime
ATGGTCTAGAAAGCTTGCCGCCGGTAAACCAAGAGTTTTGCGCACCAGCC
GTCGGGCGATGGCGTTGAACTCATCCCTCTGTTCGCGCCACATAATTGCT
GCATCCACATTAGCGCCGCTCTCATCGTTGGGTTCCGCCAGCATGCTGAC
CACACTAAGCAAAATCTTCTCCACGCTCTGGACAGGACTCCAGCGCTCCG
CGGATAGCTCGTAGCCCATGGGATCGTCGCCGGGTGCGTGTAGTATTGAT
ATGCAGACCCGCCCGTCGGCGAATATGTTGGGATGGAACATGTCACAAGT
GAATTTCATTTTAGGCGGACTCAGAGGATAGTCGGTCGGAAAGATGAGCC
GGGCAGGAAACACTCCGCCCTCGAAACAAGTGCCCTCAGGTCCGGCAATC
AGTGCCTCCCACTCGAAGAAGTTGTCCTCGCTGATGGGGCCGGCCACAAT
GCCCTCGGGCGGGTCAAGTGTTAACTGTTTGTATTCCGCCATCAGGCGGC
GCAGTGCGGACCCAGCCATGTCGACTGATAACT

BO13434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4443-PA 504 crl-RA 1..501 519..19 2505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 1886 CG4443-RB 325..825 519..19 2505 100 Minus
Ubc7-RA 1435 CG4443-RA 325..825 519..19 2505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594271..16594530 394..135 1300 100 Minus
X 23542271 X 16594690..16594806 135..19 585 100 Minus
X 23542271 X 16594106..16594187 476..395 410 100 Minus
X 23542271 X 16594001..16594043 519..477 215 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:22:55 has no hits.

BO13434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:16 Download gff for BO13434.3prime
Subject Subject Range Query Range Percent Splice Strand
crl-PA 1..504 15..519 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:01 Download gff for BO13434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4443-PA 1..504 15..519 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:00 Download gff for BO13434.3prime
Subject Subject Range Query Range Percent Splice Strand
crl-RA 325..828 15..519 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:12 Download gff for BO13434.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 325..828 15..519 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:12 Download gff for BO13434.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16594001..16594043 477..519 100 -> Minus
X 16594106..16594187 395..476 100 -> Minus
X 16594271..16594530 135..394 100 -> Minus
X 16594691..16594809 15..134 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:00 Download gff for BO13434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16488034..16488076 477..519 100 -> Minus
arm_X 16488139..16488220 395..476 100 -> Minus
arm_X 16488304..16488563 135..394 100 -> Minus
arm_X 16488724..16488842 15..134 98   Minus

BO13434.5prime Sequence

533 bp (532 high quality bases) assembled on 2006-05-29

> BO13434.5prime
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGGCAAGCTTTCTAGACC

BO13434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4443-PA 504 crl-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 1886 CG4443-RB 325..825 17..517 2505 100 Plus
Ubc7-RA 1435 CG4443-RA 325..825 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594271..16594530 142..401 1300 100 Plus
X 23542271 X 16594690..16594806 401..517 585 100 Plus
X 23542271 X 16594106..16594187 60..141 410 100 Plus
X 23542271 X 16594001..16594043 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:18:23 has no hits.

BO13434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:17 Download gff for BO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
crl-PA 1..504 17..521 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:03 Download gff for BO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4443-PA 1..504 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:12 Download gff for BO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
crl-RA 325..828 17..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:05 Download gff for BO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 325..828 17..521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:05 Download gff for BO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16594001..16594043 17..59 100 -> Plus
X 16594106..16594187 60..141 100 -> Plus
X 16594271..16594530 142..401 100 -> Plus
X 16594691..16594809 402..521 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:12 Download gff for BO13434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16488139..16488220 60..141 100 -> Plus
arm_X 16488034..16488076 17..59 100 -> Plus
arm_X 16488304..16488563 142..401 100 -> Plus
arm_X 16488724..16488842 402..521 98   Plus

BO13434.complete Sequence

535 bp assembled on 2006-10-11

GenBank Submission: FJ632781

> BO13434.complete
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGGCAAGCTTTCTAGACCAT

BO13434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 504 CG4443-PB 1..501 17..517 2505 100 Plus
Ubc7-RA 504 CG4443-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 1886 CG4443-RB 325..825 17..517 2505 100 Plus
Ubc7-RA 1435 CG4443-RA 325..825 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594271..16594530 142..401 1300 100 Plus
X 23542271 X 16594690..16594806 401..517 585 100 Plus
X 23542271 X 16594106..16594187 60..141 410 100 Plus
X 23542271 X 16594001..16594043 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:44:31 has no hits.

BO13434.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:36 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 1..504 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:53 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 323..826 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:29:56 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 325..825 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:36 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 323..826 17..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:29 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 325..825 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:29 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
X 16594691..16594806 402..519 98   Plus
X 16594001..16594043 17..59 100 -> Plus
X 16594106..16594187 60..141 100 -> Plus
X 16594271..16594530 142..401 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:29:56 Download gff for BO13434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16488304..16488563 142..401 100 -> Plus
arm_X 16488724..16488839 402..519 98   Plus
arm_X 16488034..16488076 17..59 100 -> Plus
arm_X 16488139..16488220 60..141 100 -> Plus

BO13434.pep Sequence

Translation from 16 to 535

> BO13434.pep
MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAGPEGTCFE
GGVFPARLIFPTDYPLSPPKMKFTCDMFHPNIFADGRVCISILHAPGDDP
MGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAAIMWREQRDE
FNAIARRLVRKTLGLPAASFLDH

BO13434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-PB 167 CG4443-PB 1..167 1..167 882 100 Plus
Ubc7-PA 167 CG4443-PA 1..167 1..167 882 100 Plus
CG40045-PA 168 CG40045-PA 10..163 9..162 451 55.8 Plus
CG40045-PD 167 CG40045-PD 10..162 9..162 437 55.8 Plus
Ubc87F-PA 168 CG9602-PA 10..163 9..162 437 55.2 Plus