Clone Sequence Records
BO13437.3prime Sequence
926 bp (789 high quality bases) assembled on 2006-05-08
> BO13437.3prime
ATGGTCTAGAAAGCTTGCCAAGTACTGCCAGATCAGCCAGATGGCCAGCA
CCACGCCGAGGACCAGGTCCATGGGCAGGCTAAAGGTGTTCCGCCTGGCG
TGCTCATTGCGTGCGATCTCGATGATCTTGTGGGTGGCCTGGAGCCACTG
CTTCACCACCGACGCCTCCGCAGCCATAAAGGAGTACTCCTCCCGCTTGG
AGCCGACACTAGATCCGCCCTCCTCCTGTTTCACTAGCAGGTTAATGATC
TTGTTGGCATTGGACGAGACCGAGTCCAGTGGCCTCTGCAGCTCCACGTG
CTCCCAGTTGTAGTGCTGCCGGTAGGCCAGCCGCTTCTTTCGCACCTCCG
TGCACACCAAACAGCGATCGAACAGGAACACCTTGGAGCGGTACTTTTTC
CGGGTGGGAAAGTGCTGGGCGTCGAATTCCGTCGCACGGCGGAAGTTTCC
CAGCTGCAGGACGTCCAACTCGTTGAGCTCCTCGATGTTGGGTATCTCCT
CGGCCTGATTGACCACATCCAGAGCGCGTCGCATGCGCGTCTCGAGTTTG
CAAACTGCAGTCAGCACTGGCTTGCAACTAATTCCACTTTTGTAGAATTC
CGATATGAACTGCTGCAGGAGCAATGGATATCTGGTCAGTCTTTGGATGG
GCTGAACTAGGAAGCTGTCGATGCCCAGCTTGTCTTTTATTTGGGTTTGA
TATGTCTGCAACCACAGCCGATTATCCTGTCGCAGTTGCATAGAAGACTT
CTTCCCCATAGTGAAGCTCACATAGCAATAGAAGCTATTTTTCTCGAAGT
GAGCAGCAAACTCATCGAATAGACCTTTGAGATCCCGCTGATTGCGCAAC
ATGAGCGGCAGTATCTCCTTCTCATGCAGCTCCAGTATTTCCTTAATGTT
TCCCAGCAGCATCTTTTTGTTCGTTT
BO13437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-PB | 1395 | CG15611-RB | 494..1392 | 917..19 | 4495 | 100 | Minus |
CG15611-PA | 1527 | CG15611-RA | 626..1524 | 917..19 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-RA | 1759 | CG15611-RA | 766..1673 | 926..19 | 4510 | 99.8 | Minus |
CG15611-RB | 1627 | CG15611-RB | 634..1541 | 926..19 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17113823..17114274 | 470..19 | 2260 | 100 | Minus |
2R | 25286936 | 2R | 17113628..17113760 | 601..469 | 665 | 100 | Minus |
2R | 25286936 | 2R | 17110367..17110500 | 926..793 | 640 | 98.5 | Minus |
2R | 25286936 | 2R | 17113466..17113573 | 707..600 | 540 | 100 | Minus |
2R | 25286936 | 2R | 17113316..17113404 | 794..706 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:46:53 has no hits.
BO13437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:22 Download gff for
BO13437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-PB | 485..1395 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:11 Download gff for
BO13437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-PA | 617..1527 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:31 Download gff for
BO13437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 634..1544 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:33 Download gff for
BO13437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 634..1544 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:33 Download gff for
BO13437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17110367..17110500 | 793..926 | 98 | -> | Minus |
2R | 17113318..17113404 | 706..792 | 100 | -> | Minus |
2R | 17113468..17113572 | 601..705 | 100 | -> | Minus |
2R | 17113629..17113760 | 469..600 | 100 | -> | Minus |
2R | 17113825..17114277 | 15..468 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:31 Download gff for
BO13437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12997872..12998005 | 793..926 | 98 | -> | Minus |
arm_2R | 13000823..13000909 | 706..792 | 100 | -> | Minus |
arm_2R | 13000973..13001077 | 601..705 | 100 | -> | Minus |
arm_2R | 13001134..13001265 | 469..600 | 100 | -> | Minus |
arm_2R | 13001330..13001782 | 15..468 | 99 | | Minus |
BO13437.5prime Sequence
853 bp (773 high quality bases) assembled on 2006-05-30
> BO13437.5prime
GAAGTTATCAGTCGACATGGAGTTGTCATTGTTCACATTAAATTTGTTCG
ATGTGGTCTCGGTGGTGCTCACATTTCTTGTGATATTTCTAGTGCAAATT
CTTAACGTTTACTTGCATATACTCGACGATAATGCCGATAATGGCAAATC
GATCGATGTGGTGGACAAGGCACCAGCGAAAGAATGCCCGTTACTTGAGT
CCCAGTCACCCAGTTCACCAATCGCCACCACTCTACCGAAATCCCAGGCA
TCGAGCAACGGCAAGTTGGAGAAGCAAATAAGTCTGCTGGACAGCGATAG
CCACGAGGATGAGGACACATTGTCCTTGGAAAATCTGTTTCCCTGCGATC
AAACCGAGATCTATGCCTCCAAGAAGATCAGCTTCATAATCGACGAGCTC
ATCCAGACGGAGGTGAACTATGTGAACAATCTGAAGAAGGGTATGCTAAA
CTATGGACAGCTGAAGGATGTCGAGGATTTGCCAGAAGCCCTGAGTGGCG
AAACGAAACAAAAGATGCTGCTGGGAAACATTAAGGAAATACTGGAGCTG
CATGAGAAGGAGATACTGCCGCTCATGTTGCGCAATCAGCGGGATCTCAA
AGGTCTATTCGATGAGTTTGCTGCTCACTTCGAGAAAAATAGCTTCTATT
GCTATGTGAGCTTCACTATGGGGAAGAAGTCTTCTATGCAACTGCGACAG
GATAATCGGCTGTGGTTGCAGACATATCAAACCCAAATAAAAGACAAGCT
GGGCATCGACAGCTTCCTAGTTCAGCCCATCCAAAGACTGACCAGATATC
CATTGCTCCTGCAGCAGTTCATATCGGAATTCTACAAAAGTGGAATTAAT
TGC
BO13437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-PB | 1395 | CG15611-RB | 1..832 | 17..848 | 4160 | 100 | Plus |
CG15611-PA | 1527 | CG15611-RA | 417..964 | 301..848 | 2740 | 100 | Plus |
CG15611-PA | 1527 | CG15611-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-RB | 1627 | CG15611-RB | 150..986 | 17..853 | 4170 | 99.9 | Plus |
CG15611-RA | 1759 | CG15611-RA | 566..1118 | 301..853 | 2750 | 99.8 | Plus |
CG15611-RA | 1759 | CG15611-RA | 150..434 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17110165..17110500 | 299..634 | 1680 | 100 | Plus |
2R | 25286936 | 2R | 17108993..17109276 | 17..300 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 17113466..17113573 | 720..827 | 540 | 100 | Plus |
2R | 25286936 | 2R | 17113316..17113404 | 633..721 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:51:57 has no hits.
BO13437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:23 Download gff for
BO13437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-PB | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:13 Download gff for
BO13437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-PB | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:46 Download gff for
BO13437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 140..986 | 7..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:51 Download gff for
BO13437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 140..986 | 7..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:51 Download gff for
BO13437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17113468..17113572 | 722..826 | 100 | -> | Plus |
2R | 17113629..17113655 | 827..853 | 96 | | Plus |
2R | 17108983..17109276 | 7..300 | 98 | -> | Plus |
2R | 17110167..17110500 | 301..634 | 100 | -> | Plus |
2R | 17113318..17113404 | 635..721 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:46 Download gff for
BO13437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12996488..12996781 | 7..300 | 98 | -> | Plus |
arm_2R | 12997672..12998005 | 301..634 | 100 | -> | Plus |
arm_2R | 13000823..13000909 | 635..721 | 100 | -> | Plus |
arm_2R | 13000973..13001077 | 722..826 | 100 | -> | Plus |
arm_2R | 13001134..13001160 | 827..853 | 96 | | Plus |
BO13437.complete Sequence
1426 bp assembled on 2006-10-11
GenBank Submission: FJ632782
> BO13437.complete
GAAGTTATCAGTCGACATGGAGTTGTCATTGTTCACATTAAATTTGTTCG
ATGTGGTCTCGGTGGTGCTCACATTTCTTGTGATATTTCTAGTGCAAATT
CTTAACGTTTACTTGCATATACTCGACGATAATGCCGATAATGGCAAATC
GATCGATGTGGTGGACAAGGCACCAGCGAAAGAATGCCCGTTACTTGAGT
CCCAGTCACCCAGTTCACCAATCGCCACCACTCTACCGAAATCCCAGGCA
TCGAGCAACGGCAAGTTGGAGAAGCAAATAAGTCTGCTGGACAGCGATAG
CCACGAGGATGAGGACACATTGTCCTTGGAAAATCTGTTTCCCTGCGATC
AAACCGAGATCTATGCCTCCAAGAAGATCAGCTTCATAATCGACGAGCTC
ATCCAGACGGAGGTGAACTATGTGAACAATCTGAAGAAGGGTATGCTAAA
CTATGGACAGCTGAAGGATGTCGAGGATTTGCCAGAAGCCCTGAGTGGCG
AAACGAAACAAAAGATGCTGCTGGGAAACATTAAGGAAATACTGGAGCTG
CATGAGAAGGAGATACTGCCGCTCATGTTGCGCAATCAGCGGGATCTCAA
AGGTCTATTCGATGAGTTTGCTGCTCACTTCGAGAAAAATAGCTTCTATT
GCTATGTGAGCTTCACTATGGGGAAGAAGTCTTCTATGCAACTGCGACAG
GATAATCGGCTGTGGTTGCAGACATATCAAACCCAAATAAAAGACAAGCT
GGGCATCGACAGCTTCCTAGTTCAGCCCATCCAAAGACTGACCAGATATC
CATTGCTCCTGCAGCAGTTCATATCGGAATTCTACAAAAGTGGAATTAGT
TGCAAGCCAGTGCTGACTGCAGTTTGCAAACTCGAGACGCGCATGCGACG
CGCTCTGGATGTGGTCAATCAGGCCGAGGAGATACCCAACATCGAGGAGC
TCAACGAGTTGGACGTCCTGCAGCTGGGAAACTTCCGCCGTGCGACGGAA
TTCGACGCCCAGCACTTTCCCACCCGGAAAAAGTACCGCTCCAAGGTGTT
CCTGTTCGATCGCTGTTTGGTGTGCACGGAGGTGCGAAAGAAGCGGCTGG
CCTACCGGCAGCACTACAACTGGGAGCACGTGGAGCTGCAGAGGCCACTG
GACTCGGTCTCGTCCAATGCCAACAAGATCATTAACCTGCTAGTGAAACA
GGAGGAGGGCGGATCTAGTGTCGGCTCCAAGCGGGAGGAGTACTCCTTTA
TGGCTGCGGAGGCGTCGGTGGTGAAGCAGTGGCTCCAGGCCACCCACAAG
ATCATCGAGATCGCACGCAATGAGCACGCCAGGCGGAACACCTTTAGCCT
GCCCATGGACCTGGTCCTCGGCGTGGTGCTGGCCATCTGGCTGATCTGGC
AGTACTTGGCAAGCTTTCTAGACCAT
BO13437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-RB | 1395 | CG15611-PB | 1..1392 | 17..1408 | 6960 | 100 | Plus |
CG15611-RA | 1527 | CG15611-PA | 417..1524 | 301..1408 | 5540 | 100 | Plus |
CG15611-RA | 1527 | CG15611-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-RB | 1627 | CG15611-RB | 150..1541 | 17..1408 | 6960 | 100 | Plus |
CG15611-RA | 1759 | CG15611-RA | 566..1673 | 301..1408 | 5540 | 100 | Plus |
CG15611-RA | 1759 | CG15611-RA | 150..434 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17113823..17114274 | 957..1408 | 2260 | 100 | Plus |
2R | 25286936 | 2R | 17110165..17110500 | 299..634 | 1680 | 100 | Plus |
2R | 25286936 | 2R | 17108993..17109276 | 17..300 | 1420 | 100 | Plus |
2R | 25286936 | 2R | 17113628..17113760 | 826..958 | 665 | 100 | Plus |
2R | 25286936 | 2R | 17113466..17113573 | 720..827 | 540 | 100 | Plus |
2R | 25286936 | 2R | 17113316..17113404 | 633..721 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:29:02 has no hits.
BO13437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:37 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:55 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 137..1541 | 7..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:39 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 150..1541 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:37 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 137..1541 | 7..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:27 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15611-RB | 150..1541 | 17..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:27 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17108993..17109276 | 17..300 | 100 | -> | Plus |
2R | 17110167..17110500 | 301..634 | 100 | -> | Plus |
2R | 17113318..17113404 | 635..721 | 100 | -> | Plus |
2R | 17113468..17113572 | 722..826 | 100 | -> | Plus |
2R | 17113629..17113760 | 827..958 | 100 | -> | Plus |
2R | 17113825..17114274 | 959..1410 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:39 Download gff for
BO13437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12996498..12996781 | 17..300 | 100 | -> | Plus |
arm_2R | 12997672..12998005 | 301..634 | 100 | -> | Plus |
arm_2R | 13000823..13000909 | 635..721 | 100 | -> | Plus |
arm_2R | 13000973..13001077 | 722..826 | 100 | -> | Plus |
arm_2R | 13001134..13001265 | 827..958 | 100 | -> | Plus |
arm_2R | 13001330..13001779 | 959..1410 | 99 | | Plus |
BO13437.pep Sequence
Translation from 16 to 1426
> BO13437.pep
MELSLFTLNLFDVVSVVLTFLVIFLVQILNVYLHILDDNADNGKSIDVVD
KAPAKECPLLESQSPSSPIATTLPKSQASSNGKLEKQISLLDSDSHEDED
TLSLENLFPCDQTEIYASKKISFIIDELIQTEVNYVNNLKKGMLNYGQLK
DVEDLPEALSGETKQKMLLGNIKEILELHEKEILPLMLRNQRDLKGLFDE
FAAHFEKNSFYCYVSFTMGKKSSMQLRQDNRLWLQTYQTQIKDKLGIDSF
LVQPIQRLTRYPLLLQQFISEFYKSGISCKPVLTAVCKLETRMRRALDVV
NQAEEIPNIEELNELDVLQLGNFRRATEFDAQHFPTRKKYRSKVFLFDRC
LVCTEVRKKRLAYRQHYNWEHVELQRPLDSVSSNANKIINLLVKQEEGGS
SVGSKREEYSFMAAEASVVKQWLQATHKIIEIARNEHARRNTFSLPMDLV
LGVVLAIWLIWQYLASFLDH
BO13437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15611-PB | 464 | CG15611-PB | 1..464 | 1..464 | 2367 | 100 | Plus |
CG15611-PA | 508 | CG15611-PA | 1..508 | 1..464 | 2312 | 91.3 | Plus |
CG30456-PC | 443 | CG30456-PC | 80..334 | 117..372 | 555 | 44.4 | Plus |
CG30456-PD | 592 | CG30456-PD | 229..483 | 117..372 | 555 | 44.4 | Plus |
CG30456-PB | 682 | CG30456-PB | 319..573 | 117..372 | 555 | 44.4 | Plus |