Clone BO13437 Report

Search the DGRC for BO13437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG15611-RB
Protein status:BO13437.pep: validated full length
Sequenced Size:1426

Clone Sequence Records

BO13437.3prime Sequence

926 bp (789 high quality bases) assembled on 2006-05-08

> BO13437.3prime
ATGGTCTAGAAAGCTTGCCAAGTACTGCCAGATCAGCCAGATGGCCAGCA
CCACGCCGAGGACCAGGTCCATGGGCAGGCTAAAGGTGTTCCGCCTGGCG
TGCTCATTGCGTGCGATCTCGATGATCTTGTGGGTGGCCTGGAGCCACTG
CTTCACCACCGACGCCTCCGCAGCCATAAAGGAGTACTCCTCCCGCTTGG
AGCCGACACTAGATCCGCCCTCCTCCTGTTTCACTAGCAGGTTAATGATC
TTGTTGGCATTGGACGAGACCGAGTCCAGTGGCCTCTGCAGCTCCACGTG
CTCCCAGTTGTAGTGCTGCCGGTAGGCCAGCCGCTTCTTTCGCACCTCCG
TGCACACCAAACAGCGATCGAACAGGAACACCTTGGAGCGGTACTTTTTC
CGGGTGGGAAAGTGCTGGGCGTCGAATTCCGTCGCACGGCGGAAGTTTCC
CAGCTGCAGGACGTCCAACTCGTTGAGCTCCTCGATGTTGGGTATCTCCT
CGGCCTGATTGACCACATCCAGAGCGCGTCGCATGCGCGTCTCGAGTTTG
CAAACTGCAGTCAGCACTGGCTTGCAACTAATTCCACTTTTGTAGAATTC
CGATATGAACTGCTGCAGGAGCAATGGATATCTGGTCAGTCTTTGGATGG
GCTGAACTAGGAAGCTGTCGATGCCCAGCTTGTCTTTTATTTGGGTTTGA
TATGTCTGCAACCACAGCCGATTATCCTGTCGCAGTTGCATAGAAGACTT
CTTCCCCATAGTGAAGCTCACATAGCAATAGAAGCTATTTTTCTCGAAGT
GAGCAGCAAACTCATCGAATAGACCTTTGAGATCCCGCTGATTGCGCAAC
ATGAGCGGCAGTATCTCCTTCTCATGCAGCTCCAGTATTTCCTTAATGTT
TCCCAGCAGCATCTTTTTGTTCGTTT

BO13437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-PB 1395 CG15611-RB 494..1392 917..19 4495 100 Minus
CG15611-PA 1527 CG15611-RA 626..1524 917..19 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-RA 1759 CG15611-RA 766..1673 926..19 4510 99.8 Minus
CG15611-RB 1627 CG15611-RB 634..1541 926..19 4510 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17113823..17114274 470..19 2260 100 Minus
2R 25286936 2R 17113628..17113760 601..469 665 100 Minus
2R 25286936 2R 17110367..17110500 926..793 640 98.5 Minus
2R 25286936 2R 17113466..17113573 707..600 540 100 Minus
2R 25286936 2R 17113316..17113404 794..706 445 100 Minus
Blast to na_te.dros performed on 2015-01-31 11:46:53 has no hits.

BO13437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:22 Download gff for BO13437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-PB 485..1395 15..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:11 Download gff for BO13437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-PA 617..1527 15..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:31 Download gff for BO13437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 634..1544 15..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:33 Download gff for BO13437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 634..1544 15..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:33 Download gff for BO13437.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17110367..17110500 793..926 98 -> Minus
2R 17113318..17113404 706..792 100 -> Minus
2R 17113468..17113572 601..705 100 -> Minus
2R 17113629..17113760 469..600 100 -> Minus
2R 17113825..17114277 15..468 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:31 Download gff for BO13437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12997872..12998005 793..926 98 -> Minus
arm_2R 13000823..13000909 706..792 100 -> Minus
arm_2R 13000973..13001077 601..705 100 -> Minus
arm_2R 13001134..13001265 469..600 100 -> Minus
arm_2R 13001330..13001782 15..468 99   Minus

BO13437.5prime Sequence

853 bp (773 high quality bases) assembled on 2006-05-30

> BO13437.5prime
GAAGTTATCAGTCGACATGGAGTTGTCATTGTTCACATTAAATTTGTTCG
ATGTGGTCTCGGTGGTGCTCACATTTCTTGTGATATTTCTAGTGCAAATT
CTTAACGTTTACTTGCATATACTCGACGATAATGCCGATAATGGCAAATC
GATCGATGTGGTGGACAAGGCACCAGCGAAAGAATGCCCGTTACTTGAGT
CCCAGTCACCCAGTTCACCAATCGCCACCACTCTACCGAAATCCCAGGCA
TCGAGCAACGGCAAGTTGGAGAAGCAAATAAGTCTGCTGGACAGCGATAG
CCACGAGGATGAGGACACATTGTCCTTGGAAAATCTGTTTCCCTGCGATC
AAACCGAGATCTATGCCTCCAAGAAGATCAGCTTCATAATCGACGAGCTC
ATCCAGACGGAGGTGAACTATGTGAACAATCTGAAGAAGGGTATGCTAAA
CTATGGACAGCTGAAGGATGTCGAGGATTTGCCAGAAGCCCTGAGTGGCG
AAACGAAACAAAAGATGCTGCTGGGAAACATTAAGGAAATACTGGAGCTG
CATGAGAAGGAGATACTGCCGCTCATGTTGCGCAATCAGCGGGATCTCAA
AGGTCTATTCGATGAGTTTGCTGCTCACTTCGAGAAAAATAGCTTCTATT
GCTATGTGAGCTTCACTATGGGGAAGAAGTCTTCTATGCAACTGCGACAG
GATAATCGGCTGTGGTTGCAGACATATCAAACCCAAATAAAAGACAAGCT
GGGCATCGACAGCTTCCTAGTTCAGCCCATCCAAAGACTGACCAGATATC
CATTGCTCCTGCAGCAGTTCATATCGGAATTCTACAAAAGTGGAATTAAT
TGC

BO13437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-PB 1395 CG15611-RB 1..832 17..848 4160 100 Plus
CG15611-PA 1527 CG15611-RA 417..964 301..848 2740 100 Plus
CG15611-PA 1527 CG15611-RA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-RB 1627 CG15611-RB 150..986 17..853 4170 99.9 Plus
CG15611-RA 1759 CG15611-RA 566..1118 301..853 2750 99.8 Plus
CG15611-RA 1759 CG15611-RA 150..434 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17110165..17110500 299..634 1680 100 Plus
2R 25286936 2R 17108993..17109276 17..300 1420 100 Plus
2R 25286936 2R 17113466..17113573 720..827 540 100 Plus
2R 25286936 2R 17113316..17113404 633..721 445 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:51:57 has no hits.

BO13437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:23 Download gff for BO13437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-PB 1..837 17..853 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:13 Download gff for BO13437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-PB 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:46 Download gff for BO13437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 140..986 7..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:51 Download gff for BO13437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 140..986 7..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:51 Download gff for BO13437.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17113468..17113572 722..826 100 -> Plus
2R 17113629..17113655 827..853 96   Plus
2R 17108983..17109276 7..300 98 -> Plus
2R 17110167..17110500 301..634 100 -> Plus
2R 17113318..17113404 635..721 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:46 Download gff for BO13437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12996488..12996781 7..300 98 -> Plus
arm_2R 12997672..12998005 301..634 100 -> Plus
arm_2R 13000823..13000909 635..721 100 -> Plus
arm_2R 13000973..13001077 722..826 100 -> Plus
arm_2R 13001134..13001160 827..853 96   Plus

BO13437.complete Sequence

1426 bp assembled on 2006-10-11

GenBank Submission: FJ632782

> BO13437.complete
GAAGTTATCAGTCGACATGGAGTTGTCATTGTTCACATTAAATTTGTTCG
ATGTGGTCTCGGTGGTGCTCACATTTCTTGTGATATTTCTAGTGCAAATT
CTTAACGTTTACTTGCATATACTCGACGATAATGCCGATAATGGCAAATC
GATCGATGTGGTGGACAAGGCACCAGCGAAAGAATGCCCGTTACTTGAGT
CCCAGTCACCCAGTTCACCAATCGCCACCACTCTACCGAAATCCCAGGCA
TCGAGCAACGGCAAGTTGGAGAAGCAAATAAGTCTGCTGGACAGCGATAG
CCACGAGGATGAGGACACATTGTCCTTGGAAAATCTGTTTCCCTGCGATC
AAACCGAGATCTATGCCTCCAAGAAGATCAGCTTCATAATCGACGAGCTC
ATCCAGACGGAGGTGAACTATGTGAACAATCTGAAGAAGGGTATGCTAAA
CTATGGACAGCTGAAGGATGTCGAGGATTTGCCAGAAGCCCTGAGTGGCG
AAACGAAACAAAAGATGCTGCTGGGAAACATTAAGGAAATACTGGAGCTG
CATGAGAAGGAGATACTGCCGCTCATGTTGCGCAATCAGCGGGATCTCAA
AGGTCTATTCGATGAGTTTGCTGCTCACTTCGAGAAAAATAGCTTCTATT
GCTATGTGAGCTTCACTATGGGGAAGAAGTCTTCTATGCAACTGCGACAG
GATAATCGGCTGTGGTTGCAGACATATCAAACCCAAATAAAAGACAAGCT
GGGCATCGACAGCTTCCTAGTTCAGCCCATCCAAAGACTGACCAGATATC
CATTGCTCCTGCAGCAGTTCATATCGGAATTCTACAAAAGTGGAATTAGT
TGCAAGCCAGTGCTGACTGCAGTTTGCAAACTCGAGACGCGCATGCGACG
CGCTCTGGATGTGGTCAATCAGGCCGAGGAGATACCCAACATCGAGGAGC
TCAACGAGTTGGACGTCCTGCAGCTGGGAAACTTCCGCCGTGCGACGGAA
TTCGACGCCCAGCACTTTCCCACCCGGAAAAAGTACCGCTCCAAGGTGTT
CCTGTTCGATCGCTGTTTGGTGTGCACGGAGGTGCGAAAGAAGCGGCTGG
CCTACCGGCAGCACTACAACTGGGAGCACGTGGAGCTGCAGAGGCCACTG
GACTCGGTCTCGTCCAATGCCAACAAGATCATTAACCTGCTAGTGAAACA
GGAGGAGGGCGGATCTAGTGTCGGCTCCAAGCGGGAGGAGTACTCCTTTA
TGGCTGCGGAGGCGTCGGTGGTGAAGCAGTGGCTCCAGGCCACCCACAAG
ATCATCGAGATCGCACGCAATGAGCACGCCAGGCGGAACACCTTTAGCCT
GCCCATGGACCTGGTCCTCGGCGTGGTGCTGGCCATCTGGCTGATCTGGC
AGTACTTGGCAAGCTTTCTAGACCAT

BO13437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-RB 1395 CG15611-PB 1..1392 17..1408 6960 100 Plus
CG15611-RA 1527 CG15611-PA 417..1524 301..1408 5540 100 Plus
CG15611-RA 1527 CG15611-PA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-RB 1627 CG15611-RB 150..1541 17..1408 6960 100 Plus
CG15611-RA 1759 CG15611-RA 566..1673 301..1408 5540 100 Plus
CG15611-RA 1759 CG15611-RA 150..434 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17113823..17114274 957..1408 2260 100 Plus
2R 25286936 2R 17110165..17110500 299..634 1680 100 Plus
2R 25286936 2R 17108993..17109276 17..300 1420 100 Plus
2R 25286936 2R 17113628..17113760 826..958 665 100 Plus
2R 25286936 2R 17113466..17113573 720..827 540 100 Plus
2R 25286936 2R 17113316..17113404 633..721 445 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:29:02 has no hits.

BO13437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:37 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 1..1395 17..1412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:55 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 137..1541 7..1412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:39 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 150..1541 17..1410 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:37 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 137..1541 7..1412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:27 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
CG15611-RB 150..1541 17..1410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:27 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17108993..17109276 17..300 100 -> Plus
2R 17110167..17110500 301..634 100 -> Plus
2R 17113318..17113404 635..721 100 -> Plus
2R 17113468..17113572 722..826 100 -> Plus
2R 17113629..17113760 827..958 100 -> Plus
2R 17113825..17114274 959..1410 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:39 Download gff for BO13437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12996498..12996781 17..300 100 -> Plus
arm_2R 12997672..12998005 301..634 100 -> Plus
arm_2R 13000823..13000909 635..721 100 -> Plus
arm_2R 13000973..13001077 722..826 100 -> Plus
arm_2R 13001134..13001265 827..958 100 -> Plus
arm_2R 13001330..13001779 959..1410 99   Plus

BO13437.pep Sequence

Translation from 16 to 1426

> BO13437.pep
MELSLFTLNLFDVVSVVLTFLVIFLVQILNVYLHILDDNADNGKSIDVVD
KAPAKECPLLESQSPSSPIATTLPKSQASSNGKLEKQISLLDSDSHEDED
TLSLENLFPCDQTEIYASKKISFIIDELIQTEVNYVNNLKKGMLNYGQLK
DVEDLPEALSGETKQKMLLGNIKEILELHEKEILPLMLRNQRDLKGLFDE
FAAHFEKNSFYCYVSFTMGKKSSMQLRQDNRLWLQTYQTQIKDKLGIDSF
LVQPIQRLTRYPLLLQQFISEFYKSGISCKPVLTAVCKLETRMRRALDVV
NQAEEIPNIEELNELDVLQLGNFRRATEFDAQHFPTRKKYRSKVFLFDRC
LVCTEVRKKRLAYRQHYNWEHVELQRPLDSVSSNANKIINLLVKQEEGGS
SVGSKREEYSFMAAEASVVKQWLQATHKIIEIARNEHARRNTFSLPMDLV
LGVVLAIWLIWQYLASFLDH

BO13437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15611-PB 464 CG15611-PB 1..464 1..464 2367 100 Plus
CG15611-PA 508 CG15611-PA 1..508 1..464 2312 91.3 Plus
CG30456-PC 443 CG30456-PC 80..334 117..372 555 44.4 Plus
CG30456-PD 592 CG30456-PD 229..483 117..372 555 44.4 Plus
CG30456-PB 682 CG30456-PB 319..573 117..372 555 44.4 Plus