Clone BO13438 Report

Search the DGRC for BO13438

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG1908-RA
Protein status:BO13438.pep: Imported from assembly
Sequenced Size:1840

Clone Sequence Records

BO13438.5prime Sequence

872 bp (826 high quality bases) assembled on 2006-05-30

> BO13438.5prime
GAAGTTATCAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCA
AGTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAG
AACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCA
CGCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGC
AGATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAAT
GCCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATT
CTCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCC
ATGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTAT
AAGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTAT
TCGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGC
TTAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCG
GTTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTG
GCTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAAT
CGAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGA
GAGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAAC
CGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTC
CACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCAG
GCATTGAGAAGGGCCAGAAAGA

BO13438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1908-PA 1809 CG1908-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RE 2412 CG1908-RE 392..1247 17..872 4280 100 Plus
Lint-1-RA 2291 CG1908-RA 271..1126 17..872 4280 100 Plus
Lint-1-RD 2535 CG1908-RD 688..1370 190..872 3415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11150635..11151317 190..872 3415 100 Plus
X 23542271 X 11149714..11149851 17..154 690 100 Plus
X 23542271 X 11149924..11149961 154..191 190 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:31:25 has no hits.

BO13438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:25 Download gff for BO13438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1908-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:14 Download gff for BO13438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1908-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:18 Download gff for BO13438.5prime
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..1125 17..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:45:06 Download gff for BO13438.5prime
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..1125 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:45:06 Download gff for BO13438.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11149714..11149851 17..154 100 -> Plus
X 11149925..11149960 155..190 100 -> Plus
X 11150636..11151316 191..871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:18 Download gff for BO13438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11043747..11043884 17..154 100 -> Plus
arm_X 11043958..11043993 155..190 100 -> Plus
arm_X 11044669..11045349 191..871 100   Plus

BO13438.complete Sequence

1840 bp assembled on 2008-08-14

GenBank Submission: FJ632783

> BO13438.complete
GAAGTTATCAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCA
AGTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAG
AACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCA
CGCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGC
AGATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAAT
GCCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATT
CTCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCC
ATGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTAT
AAGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTAT
TCGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGC
TTAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCG
GTTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTG
GCTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAAT
CGAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGA
GAGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAAC
CGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTC
CACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCAG
GCATTGAGAAGGGCCAGAAAGACGAAGCAGCAGCCACGTTTGTTCGACGA
CGAGGAGGACCTGGAGATCACCAGTTTGCAGAACGATCGCAACAAGAACA
GAACCAGCGATGGCAAGGGGACACCGCCATCGCTGGAGCCAACGAATGCT
GCCGCCAATCAGGCAGCCAAGAAGACCATCCCACAAATGTCTAGTCAGGG
GATGGCGAAGAATAATACCGCGAAGAGCAAAAACACGTGCAGGAAATCCT
CGCCAACGCCCACATCCAGTGGACAGTCGCAGCCAGCGGTATCGTCATCC
GGCAGCTCCGATGATTCCAGTGCCGAGCTGCAGCAGGAGCAGCAAAGACG
CGTCGCATCCGCCGCCCAGTGGCGCGATGAGCCGCGCGAGAGCCGCACCC
AGCCGGAGGAGTACGGCCAGGAGACGTTCCTCGGCCTCTTTGAGCTCTAC
TCGCCGGAGGTGCTCAAGAAGCTCAGTCAGCGCCACTCGAAGCGCAAGCG
TCGCACCGTTCAGAATGCCAGCGGAGTGGATTTTCACTATGGCCAGCAGT
TGAATGCCGTGGACGCGTTAGTCATGGGCGTTCGTGGTCAGAAGAAGACC
AAGGAGAAGTCCGAATTCCTGCTCTCGCCGACGGAAAAACGTTTGCAGGC
CAACTCGAAGAGGACGTACACACGCAAGAGCAAGTCGCCGGACGAGATTT
CGGAGAAGAGCAGCGCAGGAGGAGGATCTGGCGCATCGGGAACTGCGTCT
TCATCAGCCTGTCAGCATAAAGACGGCGGTGCCTCCAAGTGCCGCAAATG
CCGCGAGTGCCGTGAATGCAAACGTCGTGTGGAAACCGAAGCGATGTACT
GCCACTTGTGCAGCGGATTATACCACATGGACTGCCACGAGTTCACCAAA
AATCGCCAGCTGATGCAGCTGCAGAACTCTCGCTGCCCCCCATGCTTGCG
CGAAAAAGATAAGTTGGAGAAGGCAAGCTTTCTAGACCAT

BO13438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RE 1809 CG1908-PE 1..1806 17..1822 9030 100 Plus
Lint-1-RA 1809 CG1908-PA 1..1806 17..1822 9030 100 Plus
Lint-1-RD 1623 CG1908-PD 1..1620 203..1822 8100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RE 2412 CG1908-RE 392..2197 17..1822 9030 100 Plus
Lint-1-RA 2291 CG1908-RA 271..2076 17..1822 9030 100 Plus
Lint-1-RD 2535 CG1908-RD 688..2320 190..1822 8165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11150635..11152127 190..1682 7465 100 Plus
X 23542271 X 11152237..11152377 1682..1822 705 100 Plus
X 23542271 X 11149714..11149851 17..154 690 100 Plus
X 23542271 X 11149924..11149961 154..191 190 100 Plus
Blast to na_te.dros performed 2014-11-27 15:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 753..789 900..864 113 78.4 Minus

BO13438.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:29 Download gff for BO13438.complete
Subject Subject Range Query Range Percent Splice Strand
CG1908-RA 266..2071 17..1822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:02 Download gff for BO13438.complete
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..2076 17..1824 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:53 Download gff for BO13438.complete
Subject Subject Range Query Range Percent Splice Strand
CG1908-RA 266..2071 17..1824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:44 Download gff for BO13438.complete
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..2076 17..1824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:44 Download gff for BO13438.complete
Subject Subject Range Query Range Percent Splice Strand
X 11150636..11152127 191..1682 100 -> Plus
X 11149714..11149851 17..154 100 -> Plus
X 11149925..11149960 155..190 100 -> Plus
X 11152238..11152377 1683..1824 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:02 Download gff for BO13438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11043747..11043884 17..154 100 -> Plus
arm_X 11043958..11043993 155..190 100 -> Plus
arm_X 11044669..11046160 191..1682 100 -> Plus
arm_X 11046271..11046410 1683..1824 98   Plus

BO13438.pep Sequence

Translation from 16 to 1840

> BO13438.pep
MSKYHKERKYAKFRYYMEKYYVLPLELKNDIIYCQRSLRDFLKVHALVSE
VFDEQADADPVQMRRILDELEEEVYEINAEQQFLLLRLNDSLQEFSVKLK
ENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFL
LSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDE
ATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAEL
SQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLE
ITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNN
TAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAA
QWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN
ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLLSPTEKRLQANSKRT
YTRKSKSPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE
CKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSRCPPCLREKDKL
EKASFLDH

BO13438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-PE 602 CG1908-PE 1..602 1..602 3109 100 Plus
Lint-1-PA 602 CG1908-PA 1..602 1..602 3109 100 Plus
Lint-1-PD 540 CG1908-PD 1..540 63..602 2782 100 Plus
Lint-1-PC 540 CG1908-PC 1..540 63..602 2782 100 Plus