Clone Sequence Records
BO13446.3prime Sequence
877 bp (820 high quality bases) assembled on 2006-05-08
> BO13446.3prime
ATGGTCTAGAAAGCTTGCATACTCCTCGTCCTCTGGTGGTGCATCGTCAG
GCGGCGCAAAACCATCCTCAGTCGCATATAAGATGTCCAAAATCTTTTGT
ATGATCGGATGCGCCTCGGCGTCATCGGCTTCTTGGCAAAGAATTTCAAT
ATCCCGCAACTTAGAGAAGTAAAAGTCTCGCTCCTTTTCCAATCCCTCCA
GGTTTATGCGCATATCCATCACCTGATTTGACATCTCTTCTATTTGTTGA
TTGTTGACCGAATTGCTCACGTCGTTCTTCTTGACCGTGCCCGTGCTGTT
GGCACAGGCGTTTATTCTGCTCGCTGGGGCTGCGTTGTTCGTGCGCGGCA
GCACCTTGGATACTGTGGGCTTCACTGCAGACGTCATTGCTGGGCGTGTC
GTTGCCGATGGGCCACGTCGATAGCTGCTGGACACGCCGCTTGCCGCCGT
GCCGGGCAGTGACTTTACCGCTCCCGATCCGAAGCCCATTGGGGCTCCCT
CGCGCACCGCGCTGGCATCGTAATCCCTGCCATCGTAATTGGCATCGAAG
AACTTTTTAAACCATTGCAAAAACTCGAAATTGTCTTGGAAGCGACCCTT
GACTAATTTGTCAATGGGTATAATCTTATCCACAGACATCTTCTTGAAGC
CCGCCTGCAATATCTTGAAGTTCTGTATGTACTCGTGCTCCAGATTGGTA
CGAAATTTGACACGCTTTACTGGCACTGAATTGGGAAACAGCATGTCCAT
GAACTGACAGTAAGCTGCACCTGTGCAGAGCTCCTCGATTTTTGAGAATT
GCGACTGGAGGCAATCGTTAACCCAAGCTAGCATATCGTGGCGCGAGAGA
TTCTCTGACGTCACATTTGTGGAGTAG
BO13446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3265-PB | 876 | Eb1-RB | 15..873 | 877..19 | 4295 | 100 | Minus |
| CG3265-PD | 876 | Eb1-RD | 15..873 | 877..19 | 4295 | 100 | Minus |
| CG3265-PA | 876 | Eb1-RA | 15..873 | 877..19 | 4295 | 100 | Minus |
| CG3265-PC | 1182 | Eb1-RC | 573..1179 | 625..19 | 3035 | 100 | Minus |
| CG3265-PE | 873 | Eb1-RE | 15..526 | 877..366 | 2560 | 100 | Minus |
| CG3265-PE | 873 | Eb1-RE | 527..870 | 362..19 | 1720 | 100 | Minus |
| CG3265-PC | 1182 | Eb1-RC | 15..269 | 877..623 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RG | 2043 | CG3265-RG | 117..975 | 877..19 | 4295 | 100 | Minus |
| Eb1-RA | 1873 | CG3265-RA | 210..1068 | 877..19 | 4295 | 100 | Minus |
| Eb1-RD | 1779 | CG3265-RD | 116..974 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202073..25202847 | 877..93 | 3145 | 94.3 | Minus |
| 2R | 25286936 | 2R | 6754178..6754438 | 626..366 | 1305 | 100 | Minus |
| 2R | 25286936 | 2R | 6752841..6752988 | 772..625 | 740 | 100 | Minus |
| 2R | 25286936 | 2R | 6754702..6754847 | 365..220 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 6752678..6752786 | 877..769 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 6754894..6754981 | 227..140 | 440 | 100 | Minus |
| 2R | 25286936 | 2R | 6755045..6755118 | 139..66 | 370 | 100 | Minus |
| 2R | 25286936 | 2R | 6755183..6755232 | 68..19 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 7767898..7768147 | 539..788 | 245 | 73.2 | Plus |
| 2R | 25286936 | 2R | 6753251..6753318 | 600..533 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:02:52 has no hits.
BO13446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:36 Download gff for
BO13446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-PA | 15..876 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:28 Download gff for
BO13446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3265-PD | 15..876 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:16 Download gff for
BO13446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 116..980 | 10..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:37 Download gff for
BO13446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 116..980 | 10..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:37 Download gff for
BO13446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202073..25202852 | 86..877 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:16 Download gff for
BO13446.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687551..688330 | 86..877 | 93 | | Minus |
BO13446.5prime Sequence
838 bp (797 high quality bases) assembled on 2006-05-29
> BO13446.5prime
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCC
AAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGC
CTGTGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGG
TCAACAATCAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGC
ATAAACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTT
GCGGGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATC
CGATCATACAAAAGATTTTGGACATCTTATATGCGACT
BO13446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3265-PB | 876 | Eb1-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG3265-PD | 876 | Eb1-RD | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG3265-PA | 876 | Eb1-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG3265-PC | 1182 | Eb1-RC | 573..1128 | 283..838 | 2780 | 100 | Plus |
| CG3265-PE | 873 | Eb1-RE | 1..526 | 17..542 | 2630 | 100 | Plus |
| CG3265-PE | 873 | Eb1-RE | 527..819 | 546..838 | 1465 | 100 | Plus |
| CG3265-PC | 1182 | Eb1-RC | 1..269 | 17..285 | 1345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RG | 2043 | CG3265-RG | 101..924 | 15..838 | 4120 | 100 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1017 | 15..838 | 4120 | 100 | Plus |
| Eb1-RD | 1779 | CG3265-RD | 100..923 | 15..838 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 15..815 | 3210 | 94.3 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 282..542 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754702..6754847 | 543..688 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 681..768 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755114 | 769..838 | 350 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 369..120 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6753251..6753318 | 308..375 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:24:36 has no hits.
BO13446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:37 Download gff for
BO13446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:30 Download gff for
BO13446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3265-PD | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:45:20 Download gff for
BO13446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 95..923 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:22:16 Download gff for
BO13446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 95..923 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:22:16 Download gff for
BO13446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202052..25202852 | 9..822 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:45:20 Download gff for
BO13446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687530..688330 | 9..822 | 93 | | Plus |
BO13446.complete Sequence
907 bp assembled on 2008-08-15
GenBank Submission: FJ632784
> BO13446.complete
GAAGTTATCAGTCGACATGGCTGTAAACGTCTACTCCACAAATGTGACGT
CAGAGAATCTCTCGCGCCACGATATGCTAGCTTGGGTTAACGATTGCCTC
CAGTCGCAATTCTCAAAAATCGAGGAGCTCTGCACAGGTGCAGCTTACTG
TCAGTTCATGGACATGCTGTTTCCCAATTCAGTGCCAGTAAAGCGTGTCA
AATTTCGTACCAATCTGGAGCACGAGTACATACAGAACTTCAAGATATTG
CAGGCGGGCTTCAAGAAGATGTCTGTGGATAAGATTATACCCATTGACAA
ATTAGTCAAGGGTCGCTTCCAAGACAATTTCGAGTTTTTGCAATGGTTTA
AAAAGTTCTTCGATGCCAATTACGATGGCAGGGATTACGATGCCAGCGCG
GTGCGCGAGGGAGCCCCAATGGGCTTCGGATCGGGAGCGGTAAAGTCACT
GCCCGGCACGGCGGCAAGCGGCGTGTCCAGCAGCTATCGACGTGGCCCAT
CGGCAACGACACGCCCAGCAATGACGTCTGCAGTGAAGCCCACAGTATCC
AAGGTGCTGCCGCGCACGAACAACGCAGCCCCAGCGAGCAGAATAAACGC
CTGTGCCAACAGCACGGGCACGGTCAAGAAGAACGACGTGAGCAATTCGG
TCAACAATCAACAAATAGAAGAGATGTCAAATCAGGTGATGGATATGCGC
ATAAACCTGGAGGGATTGGAAAAGGAGCGAGACTTTTACTTCTCTAAGTT
GCGGGATATTGAAATTCTTTGCCAAGAAGCCGATGACGCCGAGGCGCATC
CGATCATACAAAAGATTTTGGACATCTTATATGCGACTGAGGATGGTTTT
GCGCCGCCTGACGATGCACCACCAGAGGACGAGGAGTATGCAAGCTTTCT
AGACCAT
BO13446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RG | 876 | CG3265-PG | 1..873 | 17..889 | 4365 | 100 | Plus |
| Eb1-RA | 876 | CG3265-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
| Eb1-RD | 876 | CG3265-PD | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RG | 2043 | CG3265-RG | 101..975 | 15..889 | 4375 | 100 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1068 | 15..889 | 4375 | 100 | Plus |
| Eb1-RD | 1779 | CG3265-RD | 100..974 | 15..889 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 15..815 | 3210 | 94.3 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 282..542 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 136..283 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754702..6754847 | 543..688 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 15..139 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 681..768 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 769..842 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 6755183..6755232 | 840..889 | 250 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 369..120 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6753251..6753318 | 308..375 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:57 has no hits.
BO13446.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:02 Download gff for
BO13446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RA | 174..1059 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:46 Download gff for
BO13446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 102..974 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:06 Download gff for
BO13446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 86..958 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:18 Download gff for
BO13446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RD | 102..974 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:18 Download gff for
BO13446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202059..25202852 | 17..822 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:46 Download gff for
BO13446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687537..688330 | 17..822 | 93 | | Plus |
BO13446.pep Sequence
Translation from 16 to 907
> BO13446.pep
MAVNVYSTNVTSENLSRHDMLAWVNDCLQSQFSKIEELCTGAAYCQFMDM
LFPNSVPVKRVKFRTNLEHEYIQNFKILQAGFKKMSVDKIIPIDKLVKGR
FQDNFEFLQWFKKFFDANYDGRDYDASAVREGAPMGFGSGAVKSLPGTAA
SGVSSSYRRGPSATTRPAMTSAVKPTVSKVLPRTNNAAPASRINACANST
GTVKKNDVSNSVNNQQIEEMSNQVMDMRINLEGLEKERDFYFSKLRDIEI
LCQEADDAEAHPIIQKILDILYATEDGFAPPDDAPPEDEEYASFLDH
BO13446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-PG | 291 | CG3265-PG | 1..291 | 1..291 | 1514 | 100 | Plus |
| Eb1-PA | 291 | CG3265-PA | 1..291 | 1..291 | 1514 | 100 | Plus |
| Eb1-PD | 291 | CG3265-PD | 1..291 | 1..291 | 1514 | 100 | Plus |
| Eb1-PB | 291 | CG3265-PB | 1..291 | 1..291 | 1514 | 100 | Plus |
| Eb1-PE | 290 | CG3265-PE | 1..290 | 1..291 | 1496 | 99.3 | Plus |
