Clone Sequence Records
BO13452.3prime Sequence
909 bp (864 high quality bases) assembled on 2006-05-08
> BO13452.3prime
ATGGTCTAGAAAGCTTGCGTCTATTTTCACATTGGAATAGATTTTGCGCA
CGAAGAGATTCGTGCCCACATAGCCGACGGTGCCGCAGATAATGCCCAAG
GCGCCGCTGAAGAGTGCCATGTAGCCAAAGTAGAAGGCCGTTTGGAACAG
ACCGAACATTTTGGTTTTAAAGAAGAAGTAATAGAAGGAATAGGCGTACA
CGTAAATCGACGTGGAGCCCGCAGCCATGAAACTCGTCCACTGCCATCGG
TAATCTTCGGCATTTAGCAGGAAGTAGGTGCACACGATGGTGACGCACAC
GGTGACCACAGTCAGGATGCTGAAAACCAGCAACATGAAGCCGTAGACGT
AGTAGATCTTGTACGCCCAGAAGGAGGTGAAGATGAAGTACATCTCAATG
AAGATGGATCCAAAGGGCAAGACACCGCCAAGAAGCACAATAATCAGTGG
CTCCATGTACCACTTCTTTTCGGGAATGGGTCGTGGCACCGCGTTGACGC
GGCATGGAAAGTCTGGTTGGCCGTCCAGATTGCGGCCCACGACAGTACCC
ACCAGAGTCAAGGGCAGGATGACAAACAGGCAGATGCAAGTGACCGCCAC
CATGGTACCGAAGGGAATGGCTCTCGACGCGTGATATCCAATGGCAATGA
AGTTGATCAGGAAAGCCGTGCCGCACACAGCCACTGGAACTGTAAAAGCG
GACACCAGCATCTGTCGGATCCACATGCGTCCACCCAGGCGGGCATAGAG
CGATCCTCCAAAGTATCCATTGATTGGTGAGGTGGCGGCATACACAAATA
TAGCCGTGGACAGCATGGAGCCGCGTTCCGTGTACAATTCACCAACTATG
GCGAACATGATCACACAGAATACAACCGAAATCAGTTGGTATCCAGCGCC
CACCAACGC
BO13452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-PA | 1779 | CG10590-RA | 886..1776 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 1067..1957 | 909..19 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5601990..5602738 | 161..909 | 3745 | 100 | Plus |
| 3L | 28110227 | 3L | 5601792..5601933 | 19..160 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:46:27 has no hits.
BO13452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:46 Download gff for
BO13452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-PA | 886..1779 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:39 Download gff for
BO13452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-PA | 886..1779 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:26 Download gff for
BO13452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 1067..1961 | 14..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:29 Download gff for
BO13452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 1067..1961 | 14..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:29 Download gff for
BO13452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5601788..5601933 | 14..160 | 98 | <- | Plus |
| 3L | 5601990..5602738 | 161..909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:26 Download gff for
BO13452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5594888..5595033 | 14..160 | 98 | <- | Plus |
| arm_3L | 5595090..5595838 | 161..909 | 100 | | Plus |
BO13452.5prime Sequence
922 bp (832 high quality bases) assembled on 2006-05-30
> BO13452.5prime
GAAGTTATCAGTCGACATGGGCAGCAGCGCCACGCAAACCACGGTGCCGT
TCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCTACGTGTCGCTC
TCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGGGAGGAGGTGGT
ACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCAGGAGACGTACG
CGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCTCGATATCGCAC
TACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAGCTAGAGTTCAG
TGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATCGGTCATCTGCA
TGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCTATGCCGTGAAG
AACGAGTACTGGTACCAGATGTACATCGATGGACTGCCCATTTGGGGAAA
AGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATATCTTCACGCACA
AGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGGATATCACCCTG
ACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCACATCAACTTCTC
CTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAAGAATCGATTCG
ACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCCACTGGTTCAGC
ATCTTCAACAGCTTCATGATGGTCATCTTCCTGGTGGGTCTGGTGTCCAT
GATTCTGATGCGAACTCTGCGCAAGGATTATGCTCGGTACAGTAAGGACG
AGGAAATCGACGACATGGAGCGAGATCTTGGTGATGAATACGGCTGGAAG
CAGGTGCATGGCGATGTCTTCCGTTCTCCGCCCAACACACTGCTCTTCTC
GGCGTTGGTGGGCGCTGGATAC
BO13452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-PA | 1779 | CG10590-RA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 182..1087 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5603072..5603631 | 685..126 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 5602718..5602955 | 922..685 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 5603688..5603798 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:12:13 has no hits.
BO13452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:03:47 Download gff for
BO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:49:40 Download gff for
BO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:53 Download gff for
BO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 175..1087 | 10..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:45 Download gff for
BO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 175..1087 | 10..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:45 Download gff for
BO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5602718..5602954 | 686..922 | 100 | <- | Minus |
| 3L | 5603072..5603629 | 128..685 | 100 | <- | Minus |
| 3L | 5603688..5603805 | 10..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:53 Download gff for
BO13452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5595818..5596054 | 686..922 | 100 | <- | Minus |
| arm_3L | 5596172..5596729 | 128..685 | 100 | <- | Minus |
| arm_3L | 5596788..5596905 | 10..127 | 97 | | Minus |
BO13452.complete Sequence
1810 bp assembled on 2007-10-26
GenBank Submission: FJ632785
> BO13452.complete
GAAGTTATCAGTCGACATGGGCAGCAGCGCCACGCAAACCACGGTGCCGT
TCCGTGCAATTTGTTTATGTCTGCTGATCGCCAGCTGCTACGTGTCGCTC
TCCCAGGCAGATGAGCACAATCACAAGTACAATGACCGGGAGGAGGTGGT
ACTGTGGATGAACACGGTGGGCCCGTACCACAATCGGCAGGAGACGTACG
CGTACTTCTCTCTCCCCTTTTGCAGTGGCCAGAAGTCCTCGATATCGCAC
TACCACGAGACGCTGAGCGAGGCGCTGCAAGGAGTCGAGCTAGAGTTCAG
TGGCTACGAGATGGAGTTCAAGAGCGACGCCCCCAAATCGGTCATCTGCA
TGGTCACCTTGCAGGAGGAGAGCGCCAAGGCATTCACCTATGCCGTGAAG
AACGAGTACTGGTACCAGATGTACATCGATGGACTGCCCATTTGGGGAAA
AGTCGGTGAGCGCGACGAGCGCGATGGCAAGTACTATATCTTCACGCACA
AGAAGTTCGACATCGGCTACAATGGCCAGCAAATCGTGGATATCACCCTG
ACCACCGAGGGCCGCGAGGAACTCAAGCCGGGATCCCACATCAACTTCTC
CTACGAGGTCAACTGGAAGCCCAGCAAGGTGGAGTTCAAGAATCGATTCG
ACAAGTACCTGGATCCCAACTTCTTCCAGCACAGGATCCACTGGTTCAGC
ATCTTCAACAGCTTCATGATGGTCATCTTCCTGGTGGGTCTGGTGTCCAT
GATTCTGATGCGAACTCTGCGCAAGGATTATGCTCGGTACAGTAAGGACG
AGGAAATCGACGACATGGAGCGAGATCTTGGTGATGAATACGGCTGGAAG
CAGGTGCATGGCGATGTCTTCCGTTCTCCGCCCAACACACTGCTCTTCTC
GGCGTTGGTGGGCGCTGGATACCAACTGATTTCGGTTGTATTCTGTGTGA
TCATGTTCGCCATAGTTGGTGAATTGTACACGGAACGCGGCTCCATGCTG
TCCACGGCTATATTTGTGTATGCCGCCACCTCACCAATCAATGGATACTT
TGGAGGATCGCTCTATGCCCGCCTGGGTGGACGCATGTGGATCCGACAGA
TGCTGGTGTCCGCTTTTACAGTTCCAGTGGCTGTGTGCGGCACGGCTTTC
CTGATCAACTTCATTGCCATTGGATATCACGCGTCGAGAGCCATTCCCTT
CGGTACCATGGTGGCGGTCACTTGCATCTGCCTGTTTGTCATCCTGCCCT
TGACTCTGGTGGGTACTGTCGTGGGCCGCAATCTGGACGGCCAACCAGAC
TTTCCATGCCGCGTCAACGCGGTGCCACGACCCATTCCCGAAAAGAAGTG
GTACATGGAGCCACTGATTATTGTGCTTCTTGGCGGTGTCTTGCCCTTTG
GATCCATCTTCATTGAGATGTACTTCATCTTCACCTCCTTCTGGGCGTAC
AAGATCTACTACGTCTACGGCTTCATGTTGCTGGTTTTCAGCATCCTGAC
TGTGGTCACCGTGTGCGTCACCATCGTGTGCACCTACTTCCTGCTAAATG
CCGAAGATTACCGATGGCAGTGGACGAGTTTCATGGCTGCGGGCTCCACG
TCGATTTACGTGTACGCCTATTCCTTCTATTACTTCTTCTTTAAAACCAA
AATGTTCGGTCTGTTCCAAACGGCCTTCTACTTTGGCTACATGGCACTCT
TCAGCGGCGCCTTGGGCATTATCTGCGGCACCGTCGGCTATGTGGGCACG
AATCTCTTCGTGCGCAAAATCTATTCCAATGTGAAAATAGACGCAAGCTT
TCTAGACCAT
BO13452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 1779 | CG10590-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 182..1957 | 17..1792 | 8880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5601990..5602955 | 1650..685 | 4830 | 100 | Minus |
| 3L | 28110227 | 3L | 5603072..5603631 | 685..126 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 5601792..5601933 | 1792..1651 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 5603688..5603798 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:03 has no hits.
BO13452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:57 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 1..1779 | 17..1796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:57 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 171..1957 | 10..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:58 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 182..1957 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:00 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 178..1953 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:26 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 182..1957 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:26 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5601790..5601933 | 1651..1794 | 98 | <- | Minus |
| 3L | 5601990..5602954 | 686..1650 | 100 | <- | Minus |
| 3L | 5603072..5603629 | 128..685 | 100 | <- | Minus |
| 3L | 5603688..5603798 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:58 Download gff for
BO13452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5596788..5596898 | 17..127 | 100 | | Minus |
| arm_3L | 5594890..5595033 | 1651..1794 | 98 | <- | Minus |
| arm_3L | 5595090..5596054 | 686..1650 | 100 | <- | Minus |
| arm_3L | 5596172..5596729 | 128..685 | 100 | <- | Minus |
BO13452.pep Sequence
Translation from 16 to 1810
> BO13452.pep
MGSSATQTTVPFRAICLCLLIASCYVSLSQADEHNHKYNDREEVVLWMNT
VGPYHNRQETYAYFSLPFCSGQKSSISHYHETLSEALQGVELEFSGYEME
FKSDAPKSVICMVTLQEESAKAFTYAVKNEYWYQMYIDGLPIWGKVGERD
ERDGKYYIFTHKKFDIGYNGQQIVDITLTTEGREELKPGSHINFSYEVNW
KPSKVEFKNRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRT
LRKDYARYSKDEEIDDMERDLGDEYGWKQVHGDVFRSPPNTLLFSALVGA
GYQLISVVFCVIMFAIVGELYTERGSMLSTAIFVYAATSPINGYFGGSLY
ARLGGRMWIRQMLVSAFTVPVAVCGTAFLINFIAIGYHASRAIPFGTMVA
VTCICLFVILPLTLVGTVVGRNLDGQPDFPCRVNAVPRPIPEKKWYMEPL
IIVLLGGVLPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFSILTVVTVC
VTIVCTYFLLNAEDYRWQWTSFMAAGSTSIYVYAYSFYYFFFKTKMFGLF
QTAFYFGYMALFSGALGIICGTVGYVGTNLFVRKIYSNVKIDASFLDH
BO13452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-PA | 592 | CG10590-PA | 1..592 | 1..592 | 3156 | 100 | Plus |
| TM9SF4-PB | 630 | CG7364-PB | 55..630 | 58..592 | 925 | 35.1 | Plus |
| TM9SF4-PA | 630 | CG7364-PA | 55..630 | 58..592 | 925 | 35.1 | Plus |
| CG9318-PB | 659 | CG9318-PB | 46..659 | 41..592 | 767 | 29.6 | Plus |
| CG9318-PA | 659 | CG9318-PA | 46..659 | 41..592 | 767 | 29.6 | Plus |
