Clone BO13460 Report

Search the DGRC for BO13460

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG5969-RA
Protein status:BO13460.pep: Imported from assembly
Sequenced Size:349

Clone Sequence Records

BO13460.5prime Sequence

347 bp (346 high quality bases) assembled on 2006-05-29

> BO13460.5prime
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACGCAAGCTTTCTAGACC

BO13460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-PA 318 CG5969-RA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 947 CG5969-RA 116..430 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20474032..20474274 89..331 1215 100 Plus
3L 28110227 3L 20473898..20473970 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:25:23 has no hits.

BO13460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:02 Download gff for BO13460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-PA 1..318 17..335 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:01 Download gff for BO13460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-PA 1..318 17..335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:10:12 Download gff for BO13460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..433 17..335 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:35 Download gff for BO13460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..433 17..335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:35 Download gff for BO13460.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20473898..20473969 17..88 100 -> Plus
3L 20474032..20474277 89..335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:10:12 Download gff for BO13460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20466998..20467069 17..88 100 -> Plus
arm_3L 20467132..20467377 89..335 99   Plus

BO13460.3prime Sequence

347 bp (346 high quality bases) assembled on 2006-05-08

> BO13460.3prime
ATGGTCTAGAAAGCTTGCGTCCGTTTTGGAGCCCTTGGAACCGGGTGCCC
CAAAGTAGGCCCTGTATATATAGAGTCCCAGGGCGATGTGCAATGCAACG
ACCGCTCCCACGGCGGATGCTATGTTCACTTTGACTTCGGAAATGTCGAG
GAACTGGTCCAGAACGAAGCCCTTCAGCACAAAGAAGGTCAGCACGGGCA
GGAAAACGATAAGCATGCAGTAGAAGAGCACTGTCTTGAAGGAGCTGTAG
TCCTGCGAGTCGTGCGACTGCTGGCGGGTTTGTTTCGGCGCAACTCCGTT
GCCTCCGGCGGCTTTCTTGTTCTTGGTCGACATGTCGACTGATAACT

BO13460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-PA 318 CG5969-RA 1..315 333..19 1575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 947 CG5969-RA 116..430 333..19 1575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20474032..20474274 261..19 1215 100 Minus
3L 28110227 3L 20473898..20473970 333..261 365 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:08:27 has no hits.

BO13460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:01 Download gff for BO13460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-PA 1..318 15..333 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:00 Download gff for BO13460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-PA 1..318 15..333 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:49 Download gff for BO13460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..433 15..333 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:07 Download gff for BO13460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..433 15..333 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:07 Download gff for BO13460.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20473898..20473969 262..333 100 -> Minus
3L 20474032..20474277 15..261 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:49 Download gff for BO13460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20466998..20467069 262..333 100 -> Minus
arm_3L 20467132..20467377 15..261 99   Minus

BO13460.complete Sequence

349 bp assembled on 2008-08-15

GenBank Submission: FJ632787

> BO13460.complete
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACGCAAGCTTTCTAGACCAT

BO13460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 318 CG5969-PA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-RA 947 CG5969-RA 116..430 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20474032..20474274 89..331 1215 100 Plus
3L 28110227 3L 20473898..20473970 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:30:24 has no hits.

BO13460.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:53 Download gff for BO13460.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 102..419 17..335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:10 Download gff for BO13460.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..430 17..333 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:31 Download gff for BO13460.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 102..416 17..333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:28 Download gff for BO13460.complete
Subject Subject Range Query Range Percent Splice Strand
CG5969-RA 116..430 17..333 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:28 Download gff for BO13460.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20473898..20473969 17..88 100 -> Plus
3L 20474032..20474274 89..333 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:10 Download gff for BO13460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20466998..20467069 17..88 100 -> Plus
arm_3L 20467132..20467374 89..333 99   Plus

BO13460.pep Sequence

Translation from 16 to 349

> BO13460.pep
MSTKNKKAAGGNGVAPKQTRQQSHDSQDYSSFKTVLFYCMLIVFLPVLTF
FVLKGFVLDQFLDISEVKVNIASAVGAVVALHIALGLYIYRAYFGAPGSK
GSKTDASFLDH

BO13460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5969-PA 105 CG5969-PA 1..105 1..105 531 100 Plus