Clone Sequence Records
BO13460.5prime Sequence
347 bp (346 high quality bases) assembled on 2006-05-29
> BO13460.5prime
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACGCAAGCTTTCTAGACC
BO13460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-PA | 318 | CG5969-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 947 | CG5969-RA | 116..430 | 17..331 | 1575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20474032..20474274 | 89..331 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 20473898..20473970 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:25:23 has no hits.
BO13460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:02 Download gff for
BO13460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-PA | 1..318 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:01 Download gff for
BO13460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-PA | 1..318 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:10:12 Download gff for
BO13460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..433 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:40:35 Download gff for
BO13460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..433 | 17..335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:40:35 Download gff for
BO13460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20473898..20473969 | 17..88 | 100 | -> | Plus |
3L | 20474032..20474277 | 89..335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:10:12 Download gff for
BO13460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20466998..20467069 | 17..88 | 100 | -> | Plus |
arm_3L | 20467132..20467377 | 89..335 | 99 | | Plus |
BO13460.3prime Sequence
347 bp (346 high quality bases) assembled on 2006-05-08
> BO13460.3prime
ATGGTCTAGAAAGCTTGCGTCCGTTTTGGAGCCCTTGGAACCGGGTGCCC
CAAAGTAGGCCCTGTATATATAGAGTCCCAGGGCGATGTGCAATGCAACG
ACCGCTCCCACGGCGGATGCTATGTTCACTTTGACTTCGGAAATGTCGAG
GAACTGGTCCAGAACGAAGCCCTTCAGCACAAAGAAGGTCAGCACGGGCA
GGAAAACGATAAGCATGCAGTAGAAGAGCACTGTCTTGAAGGAGCTGTAG
TCCTGCGAGTCGTGCGACTGCTGGCGGGTTTGTTTCGGCGCAACTCCGTT
GCCTCCGGCGGCTTTCTTGTTCTTGGTCGACATGTCGACTGATAACT
BO13460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-PA | 318 | CG5969-RA | 1..315 | 333..19 | 1575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 947 | CG5969-RA | 116..430 | 333..19 | 1575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20474032..20474274 | 261..19 | 1215 | 100 | Minus |
3L | 28110227 | 3L | 20473898..20473970 | 333..261 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:27 has no hits.
BO13460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:01 Download gff for
BO13460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-PA | 1..318 | 15..333 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:00 Download gff for
BO13460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-PA | 1..318 | 15..333 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:49 Download gff for
BO13460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..433 | 15..333 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:07 Download gff for
BO13460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..433 | 15..333 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:07 Download gff for
BO13460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20473898..20473969 | 262..333 | 100 | -> | Minus |
3L | 20474032..20474277 | 15..261 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:49 Download gff for
BO13460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20466998..20467069 | 262..333 | 100 | -> | Minus |
arm_3L | 20467132..20467377 | 15..261 | 99 | | Minus |
BO13460.complete Sequence
349 bp assembled on 2008-08-15
GenBank Submission: FJ632787
> BO13460.complete
GAAGTTATCAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCA
ACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGAC
TACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCT
GCCCGTGCTGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCC
TCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTC
GTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGG
GGCACCCGGTTCCAAGGGCTCCAAAACGGACGCAAGCTTTCTAGACCAT
BO13460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 318 | CG5969-PA | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-RA | 947 | CG5969-RA | 116..430 | 17..331 | 1575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20474032..20474274 | 89..331 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 20473898..20473970 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:30:24 has no hits.
BO13460.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:53 Download gff for
BO13460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 102..419 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:10 Download gff for
BO13460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..430 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:31 Download gff for
BO13460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 102..416 | 17..333 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:28 Download gff for
BO13460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5969-RA | 116..430 | 17..333 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:28 Download gff for
BO13460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20473898..20473969 | 17..88 | 100 | -> | Plus |
3L | 20474032..20474274 | 89..333 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:10 Download gff for
BO13460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20466998..20467069 | 17..88 | 100 | -> | Plus |
arm_3L | 20467132..20467374 | 89..333 | 99 | | Plus |
BO13460.pep Sequence
Translation from 16 to 349
> BO13460.pep
MSTKNKKAAGGNGVAPKQTRQQSHDSQDYSSFKTVLFYCMLIVFLPVLTF
FVLKGFVLDQFLDISEVKVNIASAVGAVVALHIALGLYIYRAYFGAPGSK
GSKTDASFLDH
BO13460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5969-PA | 105 | CG5969-PA | 1..105 | 1..105 | 531 | 100 | Plus |