Clone Sequence Records
BO13463.3prime Sequence
521 bp (520 high quality bases) assembled on 2006-05-08
> BO13463.3prime
ATGGTCTAGAAAGCTTGCAACTTGCTCCGGCGGCTGGCGCAAGTGCTCTG
GGATCTCCTGCAGCTCAGTCCTGGAAGCCTGCAGCGCTACGCCCTCGGGC
AGATTACGTTCAATATACTCTAGAAATGTATCTAGCGTGGAGCCCGTCAA
CTTGTGGAAGTTCATATAGCGGAAGTGGGTTCGCACCTCGTACTGTACGC
GATGTTTCTTGTAGATATGCACCGACTTCAGGAGCGTCATCCGCTCGTGG
TGCGCCTTGCGAGGTGACCAACATTTTCCCTTTTCAATGCCCAAATGCTC
GGCAGCAGTAGTAGCAAACCAGGTGTAGCTCTTCAGAACTGCCGGATCAA
TACCCCGCAGCTCAATCTCCAGCTTGCTGTAGAGTTTATCCGGTTCCGGA
GCAGGTGCCGCAGGTGAAAGATTGCCTTGTACGCCGGAACTGGTGTTTAC
CGTGGACAGAGCCCGCATTGGCTGTGTCCAGCGGAGCGTCTTTATAGCCT
GTAACATGTCGACTGATAACT
BO13463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4247-PA | 492 | mRpS10-RA | 1..489 | 507..19 | 2445 | 100 | Minus |
CG4247-PB | 522 | mRpS10-RB | 37..519 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RA | 723 | CG4247-RA | 68..556 | 507..19 | 2445 | 100 | Minus |
mRpS10-RB | 746 | CG4247-RB | 97..579 | 501..19 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15230096..15230349 | 272..19 | 1270 | 100 | Minus |
3R | 32079331 | 3R | 15229798..15230027 | 501..272 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:42:50 has no hits.
BO13463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:06 Download gff for
BO13463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PA | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:07 Download gff for
BO13463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PA | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:31 Download gff for
BO13463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RA | 68..560 | 13..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:01 Download gff for
BO13463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RA | 68..560 | 13..507 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:01 Download gff for
BO13463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15229791..15230027 | 272..507 | 98 | -> | Minus |
3R | 15230097..15230353 | 13..271 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:31 Download gff for
BO13463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11055513..11055749 | 272..507 | 98 | -> | Minus |
arm_3R | 11055819..11056075 | 13..271 | 98 | | Minus |
BO13463.5prime Sequence
521 bp (520 high quality bases) assembled on 2006-05-30
> BO13463.5prime
GAAGTTATCAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACAC
AGCCAATGCGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGC
AATCTTTCACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAA
GCTGGAGATTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACA
CCTGGTTTGCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAA
TGTTGGTCACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTC
GGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACT
TCCGCTATATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTT
CTAGAGTATATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTC
CAGGACTGAGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGC
AAGTTGCAAGCTTTCTAGACC
BO13463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4247-PA | 492 | mRpS10-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG4247-PB | 522 | mRpS10-RB | 37..519 | 23..505 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RA | 723 | CG4247-RA | 68..556 | 17..505 | 2445 | 100 | Plus |
mRpS10-RB | 746 | CG4247-RB | 97..579 | 23..505 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15230096..15230349 | 252..505 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 15229798..15230027 | 23..252 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:04:17 has no hits.
BO13463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:07 Download gff for
BO13463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:08 Download gff for
BO13463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4247-PA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:48 Download gff for
BO13463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RA | 68..560 | 17..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:06 Download gff for
BO13463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RA | 68..560 | 17..511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:06 Download gff for
BO13463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15229791..15230027 | 17..252 | 98 | -> | Plus |
3R | 15230097..15230353 | 253..511 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:48 Download gff for
BO13463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11055513..11055749 | 17..252 | 98 | -> | Plus |
arm_3R | 11055819..11056075 | 253..511 | 98 | | Plus |
BO13463.complete Sequence
523 bp assembled on 2006-10-11
GenBank Submission: FJ632788
> BO13463.complete
GAAGTTATCAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACAC
AGCCAATGCGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGC
AATCTTTCACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAA
GCTGGAGATTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACA
CCTGGTTTGCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAA
TGTTGGTCACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTC
GGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACT
TCCGCTATATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTT
CTAGAGTATATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTC
CAGGACTGAGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGC
AAGTTGCAAGCTTTCTAGACCAT
BO13463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RA | 492 | CG4247-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
mRpS10-RB | 522 | CG4247-PB | 37..519 | 23..505 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-RA | 723 | CG4247-RA | 68..556 | 17..505 | 2445 | 100 | Plus |
mRpS10-RB | 746 | CG4247-RB | 97..579 | 23..505 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15230096..15230349 | 252..505 | 1270 | 100 | Plus |
3R | 32079331 | 3R | 15229798..15230027 | 23..252 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:44:53 has no hits.
BO13463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:49 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RC | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:07 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34316-RB | 58..550 | 17..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:48 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RA | 73..556 | 22..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:49 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34316-RB | 58..550 | 17..511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:14 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS10-RA | 73..556 | 22..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:14 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15229797..15230027 | 22..252 | 99 | -> | Plus |
3R | 15230097..15230349 | 253..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:48 Download gff for
BO13463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11055519..11055749 | 22..252 | 99 | -> | Plus |
arm_3R | 11055819..11056071 | 253..507 | 99 | | Plus |
BO13463.pep Sequence
Translation from 16 to 523
> BO13463.pep
MLQAIKTLRWTQPMRALSTVNTSSGVQGNLSPAAPAPEPDKLYSKLEIEL
RGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSVHIYK
KHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGVALQASRTELQ
EIPEHLRQPPEQVASFLDH
BO13463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS10-PA | 163 | CG4247-PA | 1..163 | 1..163 | 858 | 100 | Plus |
mRpS10-PB | 173 | CG4247-PB | 13..173 | 3..163 | 849 | 100 | Plus |