Clone BO13463 Report

Search the DGRC for BO13463

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS10-RA
Protein status:BO13463.pep: validated full length
Sequenced Size:523

Clone Sequence Records

BO13463.3prime Sequence

521 bp (520 high quality bases) assembled on 2006-05-08

> BO13463.3prime
ATGGTCTAGAAAGCTTGCAACTTGCTCCGGCGGCTGGCGCAAGTGCTCTG
GGATCTCCTGCAGCTCAGTCCTGGAAGCCTGCAGCGCTACGCCCTCGGGC
AGATTACGTTCAATATACTCTAGAAATGTATCTAGCGTGGAGCCCGTCAA
CTTGTGGAAGTTCATATAGCGGAAGTGGGTTCGCACCTCGTACTGTACGC
GATGTTTCTTGTAGATATGCACCGACTTCAGGAGCGTCATCCGCTCGTGG
TGCGCCTTGCGAGGTGACCAACATTTTCCCTTTTCAATGCCCAAATGCTC
GGCAGCAGTAGTAGCAAACCAGGTGTAGCTCTTCAGAACTGCCGGATCAA
TACCCCGCAGCTCAATCTCCAGCTTGCTGTAGAGTTTATCCGGTTCCGGA
GCAGGTGCCGCAGGTGAAAGATTGCCTTGTACGCCGGAACTGGTGTTTAC
CGTGGACAGAGCCCGCATTGGCTGTGTCCAGCGGAGCGTCTTTATAGCCT
GTAACATGTCGACTGATAACT

BO13463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4247-PA 492 mRpS10-RA 1..489 507..19 2445 100 Minus
CG4247-PB 522 mRpS10-RB 37..519 501..19 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS10-RA 723 CG4247-RA 68..556 507..19 2445 100 Minus
mRpS10-RB 746 CG4247-RB 97..579 501..19 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15230096..15230349 272..19 1270 100 Minus
3R 32079331 3R 15229798..15230027 501..272 1150 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:42:50 has no hits.

BO13463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:06 Download gff for BO13463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4247-PA 1..492 18..507 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:07 Download gff for BO13463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4247-PA 1..492 18..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:31 Download gff for BO13463.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RA 68..560 13..507 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:11:01 Download gff for BO13463.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RA 68..560 13..507 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:11:01 Download gff for BO13463.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15229791..15230027 272..507 98 -> Minus
3R 15230097..15230353 13..271 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:31 Download gff for BO13463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11055513..11055749 272..507 98 -> Minus
arm_3R 11055819..11056075 13..271 98   Minus

BO13463.5prime Sequence

521 bp (520 high quality bases) assembled on 2006-05-30

> BO13463.5prime
GAAGTTATCAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACAC
AGCCAATGCGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGC
AATCTTTCACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAA
GCTGGAGATTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACA
CCTGGTTTGCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAA
TGTTGGTCACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTC
GGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACT
TCCGCTATATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTT
CTAGAGTATATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTC
CAGGACTGAGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGC
AAGTTGCAAGCTTTCTAGACC

BO13463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4247-PA 492 mRpS10-RA 1..489 17..505 2445 100 Plus
CG4247-PB 522 mRpS10-RB 37..519 23..505 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS10-RA 723 CG4247-RA 68..556 17..505 2445 100 Plus
mRpS10-RB 746 CG4247-RB 97..579 23..505 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15230096..15230349 252..505 1270 100 Plus
3R 32079331 3R 15229798..15230027 23..252 1150 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:04:17 has no hits.

BO13463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:07 Download gff for BO13463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4247-PA 1..492 17..506 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:08 Download gff for BO13463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4247-PA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:48 Download gff for BO13463.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RA 68..560 17..511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:06 Download gff for BO13463.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RA 68..560 17..511 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:06 Download gff for BO13463.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15229791..15230027 17..252 98 -> Plus
3R 15230097..15230353 253..511 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:48 Download gff for BO13463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11055513..11055749 17..252 98 -> Plus
arm_3R 11055819..11056075 253..511 98   Plus

BO13463.complete Sequence

523 bp assembled on 2006-10-11

GenBank Submission: FJ632788

> BO13463.complete
GAAGTTATCAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACAC
AGCCAATGCGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGC
AATCTTTCACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAA
GCTGGAGATTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACA
CCTGGTTTGCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAA
TGTTGGTCACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTC
GGTGCATATCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACT
TCCGCTATATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTT
CTAGAGTATATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTC
CAGGACTGAGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGC
AAGTTGCAAGCTTTCTAGACCAT

BO13463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS10-RA 492 CG4247-PA 1..489 17..505 2445 100 Plus
mRpS10-RB 522 CG4247-PB 37..519 23..505 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS10-RA 723 CG4247-RA 68..556 17..505 2445 100 Plus
mRpS10-RB 746 CG4247-RB 97..579 23..505 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15230096..15230349 252..505 1270 100 Plus
3R 32079331 3R 15229798..15230027 23..252 1150 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:44:53 has no hits.

BO13463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:49 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RC 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:07 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
CG34316-RB 58..550 17..511 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:48 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RA 73..556 22..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:49 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
CG34316-RB 58..550 17..511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:14 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS10-RA 73..556 22..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:14 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15229797..15230027 22..252 99 -> Plus
3R 15230097..15230349 253..507 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:48 Download gff for BO13463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11055519..11055749 22..252 99 -> Plus
arm_3R 11055819..11056071 253..507 99   Plus

BO13463.pep Sequence

Translation from 16 to 523

> BO13463.pep
MLQAIKTLRWTQPMRALSTVNTSSGVQGNLSPAAPAPEPDKLYSKLEIEL
RGIDPAVLKSYTWFATTAAEHLGIEKGKCWSPRKAHHERMTLLKSVHIYK
KHRVQYEVRTHFRYMNFHKLTGSTLDTFLEYIERNLPEGVALQASRTELQ
EIPEHLRQPPEQVASFLDH

BO13463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS10-PA 163 CG4247-PA 1..163 1..163 858 100 Plus
mRpS10-PB 173 CG4247-PB 13..173 3..163 849 100 Plus