BO13471.3prime Sequence
872 bp (828 high quality bases) assembled on 2006-05-08
> BO13471.3prime
ATGGTCTAGAAAGCTTGACTGAAGGTGTTGACAATATCGTCGATCTTCAA
GATCGATCGAATCGTCTCCGTGGCCAGGGTGATCGACGAAATACTGACCA
GCAGCGGCTGCACAACGTTCTCCGCGAAAATGTCTGTGATGGCGCCCTTG
CGCACATTAATACCGGCGTTCTTCTCACCCTGAGCGTGGCGGTTGCGTAG
CTCCGTGACCGTGGCAATGGGATTCAAACCGGCGTTCTCAGCCAGAGTGG
AGGGAATCACCTCCAAAGCATCGGCAAATGCACGGAAGCAATACGCATCC
ACACCCTCCACGGTTTGTGCCAATGCGGCTAGCTGCAGGGCCATCTCAAT
CTCGGGCGCACCACCGCCGACAATCTGGGCGCGCAGCTTCACCAGGCAAC
GGACGACACAGAGGGCATCGTGCAGGGAGCGAGCAGCCTCCTCGAGCACC
AGCTTGTTGGATCCGCGGCAGATGATCGAGACAGTGCGTCCCATGTTCTG
AATGCCGGTGATCTTCACAAACTTGTTGGTACCACTGGCCACCTCCTCGA
CCAGATCGGCACTGGAAAGGTTCTCGGCTGTGAAGTGATCCAACGAAGCG
ATCGGTCGGCAGTGCAGGGTCTTGCACACGAACTCAATATCCTCGCGCTC
CACATCCTTAACGACCATGCACTTGATCTTGTCCAGGAAATGCTGAGCCA
GATCAGAGACAGCATCGCGCAAGATAGACTTCTGAACGAGAAGAACATTG
CATCCTGACTTCTTGATCTGCTTGACAATGTTCAGGATGTATGAACGCTC
CTCCTTGAGCACACGATCCATGGCAGCGTAATCAGATACAATCACATTGT
GATCCATATCGGTCTTGGGGGC
BO13471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-PA | 1602 | CG5525-RA | 745..1599 | 872..18 | 4225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-RA | 1916 | CG5525-RA | 857..1716 | 872..13 | 4255 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12690617..12691304 | 31..718 | 3425 | 99.9 | Plus |
2L | 23513712 | 2L | 12691363..12691502 | 718..857 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:08:22 has no hits.
BO13471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:16 Download gff for
BO13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-PA | 745..1602 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:21 Download gff for
BO13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-PA | 745..1602 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:48 Download gff for
BO13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 857..1722 | 7..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:44 Download gff for
BO13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 857..1722 | 7..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:44 Download gff for
BO13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12690619..12691303 | 33..717 | 99 | <- | Plus |
2L | 12691363..12691502 | 718..857 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:48 Download gff for
BO13471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12690619..12691303 | 33..717 | 99 | <- | Plus |
arm_2L | 12691363..12691502 | 718..857 | 99 | <- | Plus |
BO13471.5prime Sequence
869 bp (834 high quality bases) assembled on 2006-05-29
> BO13471.5prime
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTT
CTGCATTTCGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGG
ATTACGCTGCCATGGATCGTGTGCTCAGGGAGGAGCGTTCATACATCCTG
AACATTGTCAAGCAGATCA
BO13471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-PA | 1602 | CG5525-RA | 1..853 | 17..869 | 4240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5525-RA | 1916 | CG5525-RA | 113..965 | 17..869 | 4250 | 99.9 | Plus |
Tcp-1eta-RA | 1964 | CG8351-RA | 223..353 | 143..273 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12691565..12692219 | 775..121 | 3275 | 100 | Minus |
2L | 23513712 | 2L | 12692717..12692822 | 122..17 | 530 | 100 | Minus |
2L | 23513712 | 2L | 12691409..12691502 | 869..776 | 455 | 98.9 | Minus |
3R | 32079331 | 3R | 8801964..8802094 | 143..273 | 205 | 77.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:21:40 has no hits.
BO13471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:17 Download gff for
BO13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:23 Download gff for
BO13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:27 Download gff for
BO13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 113..964 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:00 Download gff for
BO13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5525-RA | 113..964 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:00 Download gff for
BO13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12692717..12692822 | 17..122 | 100 | | Minus |
2L | 12691410..12691502 | 776..868 | 98 | <- | Minus |
2L | 12691565..12692217 | 123..775 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:27 Download gff for
BO13471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12691410..12691502 | 776..868 | 98 | <- | Minus |
arm_2L | 12691565..12692217 | 123..775 | 100 | <- | Minus |
arm_2L | 12692717..12692822 | 17..122 | 100 | | Minus |