Clone BO13471 Report

Search the DGRC for BO13471

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:71
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

BO13471.3prime Sequence

872 bp (828 high quality bases) assembled on 2006-05-08

> BO13471.3prime
ATGGTCTAGAAAGCTTGACTGAAGGTGTTGACAATATCGTCGATCTTCAA
GATCGATCGAATCGTCTCCGTGGCCAGGGTGATCGACGAAATACTGACCA
GCAGCGGCTGCACAACGTTCTCCGCGAAAATGTCTGTGATGGCGCCCTTG
CGCACATTAATACCGGCGTTCTTCTCACCCTGAGCGTGGCGGTTGCGTAG
CTCCGTGACCGTGGCAATGGGATTCAAACCGGCGTTCTCAGCCAGAGTGG
AGGGAATCACCTCCAAAGCATCGGCAAATGCACGGAAGCAATACGCATCC
ACACCCTCCACGGTTTGTGCCAATGCGGCTAGCTGCAGGGCCATCTCAAT
CTCGGGCGCACCACCGCCGACAATCTGGGCGCGCAGCTTCACCAGGCAAC
GGACGACACAGAGGGCATCGTGCAGGGAGCGAGCAGCCTCCTCGAGCACC
AGCTTGTTGGATCCGCGGCAGATGATCGAGACAGTGCGTCCCATGTTCTG
AATGCCGGTGATCTTCACAAACTTGTTGGTACCACTGGCCACCTCCTCGA
CCAGATCGGCACTGGAAAGGTTCTCGGCTGTGAAGTGATCCAACGAAGCG
ATCGGTCGGCAGTGCAGGGTCTTGCACACGAACTCAATATCCTCGCGCTC
CACATCCTTAACGACCATGCACTTGATCTTGTCCAGGAAATGCTGAGCCA
GATCAGAGACAGCATCGCGCAAGATAGACTTCTGAACGAGAAGAACATTG
CATCCTGACTTCTTGATCTGCTTGACAATGTTCAGGATGTATGAACGCTC
CTCCTTGAGCACACGATCCATGGCAGCGTAATCAGATACAATCACATTGT
GATCCATATCGGTCTTGGGGGC

BO13471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 1602 CG5525-RA 745..1599 872..18 4225 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 857..1716 872..13 4255 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12690617..12691304 31..718 3425 99.9 Plus
2L 23513712 2L 12691363..12691502 718..857 685 99.3 Plus
Blast to na_te.dros performed on 2015-02-11 10:08:22 has no hits.

BO13471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:16 Download gff for BO13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 745..1602 15..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:21 Download gff for BO13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 745..1602 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:48 Download gff for BO13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 857..1722 7..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:44 Download gff for BO13471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 857..1722 7..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:44 Download gff for BO13471.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12690619..12691303 33..717 99 <- Plus
2L 12691363..12691502 718..857 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:48 Download gff for BO13471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12690619..12691303 33..717 99 <- Plus
arm_2L 12691363..12691502 718..857 99 <- Plus

BO13471.5prime Sequence

869 bp (834 high quality bases) assembled on 2006-05-29

> BO13471.5prime
GAAGTTATCAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGC
CAACGGCCAAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTG
TCCAACATCCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTT
GGGCCCCCGCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGT
CCATCACCAACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCAC
CCGGCTGCCAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGC
TGGTGACGGCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGG
CGTGCGAGAAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGAC
TCGTTCCAGCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTC
CACTCCCATCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCA
CCTCGTTGAACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCC
ATTGCCGTGGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTC
TGTGGATCTCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTG
AGGACACCGAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGA
TCCAACGCTCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTT
CTGCATTTCGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGG
ATTACGCTGCCATGGATCGTGTGCTCAGGGAGGAGCGTTCATACATCCTG
AACATTGTCAAGCAGATCA

BO13471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-PA 1602 CG5525-RA 1..853 17..869 4240 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5525-RA 1916 CG5525-RA 113..965 17..869 4250 99.9 Plus
Tcp-1eta-RA 1964 CG8351-RA 223..353 143..273 205 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12691565..12692219 775..121 3275 100 Minus
2L 23513712 2L 12692717..12692822 122..17 530 100 Minus
2L 23513712 2L 12691409..12691502 869..776 455 98.9 Minus
3R 32079331 3R 8801964..8802094 143..273 205 77.1 Plus
Blast to na_te.dros performed on 2015-02-11 11:21:40 has no hits.

BO13471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:17 Download gff for BO13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:23 Download gff for BO13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:15:27 Download gff for BO13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..964 17..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:00 Download gff for BO13471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5525-RA 113..964 17..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:00 Download gff for BO13471.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12692717..12692822 17..122 100   Minus
2L 12691410..12691502 776..868 98 <- Minus
2L 12691565..12692217 123..775 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:15:27 Download gff for BO13471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12691410..12691502 776..868 98 <- Minus
arm_2L 12691565..12692217 123..775 100 <- Minus
arm_2L 12692717..12692822 17..122 100   Minus