Clone Sequence Records
BO13475.3prime Sequence
788 bp (787 high quality bases) assembled on 2006-05-08
> BO13475.3prime
ATGGTCTAGAAAGCTTGCGTCATCCTTCTTGGTCTTCGGCTTCTTGGCCT
TTGAATCCTTCACCTTGACGCCAGCGGGTTTGTTCCAGTAGTAGATCAGC
TGGCCCAGAATAACCGAATTGGCAAAGGTAGAGGCAATGAAAGTGAGGAT
GATCATAAAGTCACCAGTCTCCTGGATGGAGGTGAAGATGCGGGCCACCG
ATCCTGCAAACATCATGATCACAGTGGCGGCTGACAACTGACCAGTGGAT
CCAGCCTGGTAGTTGGTATACGCCTGAGACAGCTTGCCCACCAGCAGGAT
GGGAATGTTGCAGCTCTGGATGGTGAACAGCACCGACATGGGCGTTAGCC
CCGAATTGAGAACATACATCAGCACGACATATCCCACTAGAAAGAGTCCC
GACTGCGCCTTGCGCCCGTTGAAGAACAAGACCAAGACGGCGATTGTGAC
GGTCTGGATGGCCAGAAAGGTACTGTCGCCCCAGGCACTAAACGGATAGC
CATGCATAAAGTTGTACGACAGGTGGAAGGAGATGGCCAGCAAGTCCAAC
ACTACGCCCACAATGTTGATGCCCTCGCCAGACTTGCTGTTAAGGATCTT
CAGCACTTGTGGTACTTTGACCAGCACGGAACCTGCGATAATTGCCAATC
CCAAGCCCTTGCTCAGCAAAGCCTTGAAGCACGGAACATCTAAAAAGTTG
TGATAGAGGAAGTAGTTATCATAGCACTTCTCGCTCATAAGGAACAGAGC
ACCCTGCCTGATAAGATCCGTCATGTCGACTGATAACT
BO13475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-PA | 759 | CG3792-RA | 1..756 | 774..19 | 3755 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-RA | 1194 | CG3792-RA | 287..1042 | 774..19 | 3765 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4977747..4978415 | 687..19 | 3330 | 99.9 | Minus |
| 2L | 23513712 | 2L | 4977598..4977685 | 774..687 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:51:30 has no hits.
BO13475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:20 Download gff for
BO13475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:28 Download gff for
BO13475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:31 Download gff for
BO13475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1047 | 13..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:55 Download gff for
BO13475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1047 | 13..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:55 Download gff for
BO13475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4977598..4977685 | 687..774 | 100 | -> | Minus |
| 2L | 4977748..4978420 | 13..686 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:31 Download gff for
BO13475.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4977598..4977685 | 687..774 | 100 | -> | Minus |
| arm_2L | 4977748..4978420 | 13..686 | 99 | | Minus |
BO13475.5prime Sequence
788 bp (754 high quality bases) assembled on 2006-05-30
> BO13475.5prime
GAAGTTATCAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCC
TTATGAGCGAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTA
GATGTTCCGTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAAT
TATCGCAGGTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTA
ACAGCAAGTCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTG
CTGGCCATCTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTT
TAGTGCCTGGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCG
CCGTCTTGGTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTT
CTAGTGGGATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCC
CATGTCGGTGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGG
TGGGCAAGCTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGT
CAGTTGTCAGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCG
CATCTTCACCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTT
TCATTGCCTCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTAC
TACTGGAACAAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAA
GCCGAAGACCAAGAAGGATGACGCAAGCTTTCTAGACC
BO13475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-PA | 759 | CG3792-RA | 1..756 | 17..772 | 3755 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-RA | 1194 | CG3792-RA | 287..1042 | 17..772 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4977747..4978415 | 104..772 | 3330 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4977598..4977685 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:11:56 has no hits.
BO13475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:22 Download gff for
BO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:29 Download gff for
BO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:44:35 Download gff for
BO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1047 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:31 Download gff for
BO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1047 | 17..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:31 Download gff for
BO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
| 2L | 4977748..4978420 | 105..778 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:44:35 Download gff for
BO13475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
| arm_2L | 4977748..4978420 | 105..778 | 99 | | Plus |
BO13475.complete Sequence
790 bp assembled on 2006-10-11
GenBank Submission: FJ632789
> BO13475.complete
GAAGTTATCAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCC
TTATGAGCGAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTA
GATGTTCCGTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAAT
TATCGCAGGTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTA
ACAGCAAGTCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTG
CTGGCCATCTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTT
TAGTGCCTGGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCG
CCGTCTTGGTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTT
CTAGTGGGATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCC
CATGTCGGTGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGG
TGGGCAAGCTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGT
CAGTTGTCAGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCG
CATCTTCACCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTT
TCATTGCCTCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTAC
TACTGGAACAAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAA
GCCGAAGACCAAGAAGGATGACGCAAGCTTTCTAGACCAT
BO13475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-RA | 759 | CG3792-PA | 1..756 | 17..772 | 3765 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-RA | 1194 | CG3792-RA | 287..1042 | 17..772 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4977747..4978415 | 104..772 | 3330 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4977598..4977685 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:43:13 has no hits.
BO13475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:39 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:57 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 275..1035 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:29 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1042 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:39 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 275..1035 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:03 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1042 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:03 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
| 2L | 4977748..4978415 | 105..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:29 Download gff for
BO13475.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4977748..4978415 | 105..774 | 99 | | Plus |
| arm_2L | 4977598..4977685 | 17..104 | 100 | -> | Plus |
BO13475.pep Sequence
Translation from 16 to 790
> BO13475.pep
MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSV
LVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGD
STFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLF
TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSI
QETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKK
DDASFLDH
BO13475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-PA | 252 | CG3792-PA | 1..252 | 1..252 | 1272 | 100 | Plus |
| CG1265-PB | 221 | CG1265-PB | 25..217 | 41..232 | 175 | 24.5 | Plus |
