Clone BO13477 Report

Search the DGRC for BO13477

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptPabp2-RA
Protein status:BO13477.pep: Imported from assembly
Sequenced Size:706

Clone Sequence Records

BO13477.3prime Sequence

704 bp (703 high quality bases) assembled on 2006-05-08

> BO13477.3prime
ATGGTCTAGAAAGCTTGCGTAAGGAGCGTAGTAATTGGCGCGACCACGGT
AACCCATAGCTCTTCGGGCGCCTCGGAAGGTGGAGTGACAGCACGCCCGG
GAGACACGGGCTCCTCGACCCCGGAAGCTGCCGCGTGCGAAACGGTTTGT
GGTGGAGAGTCCAGGGCGGTTTGTGCGCTTCGACATTACCTTTATTTGAC
GCCCCCGGAAGAGGGTTTCGTTCATGGCCAATGCCGTCTCGACAAACTCC
TTGGAACCAAACTCAATGTATGCGAATCCCTTGGGGTGCCCGTCAGCCTT
GTTGCAGAGTATGGTTACTCGGTTGATTGTGCCGCATCCGTGGAAGTGGG
CCTCCAGTTCCTCGGCCGATGCGCCGTAGTCCACATTGCCCACGTAGACG
GACCGCGTGTCGATTTCCTGCTTCTCCTCAAGAGAAAGCGGGACTGTGGC
CAAGCCGGTGGTAGACCCACCGGCCATTTGTTTGTCCACCTCCGACTGCA
TCTGCTTTATCTTCTCGGCCTCCTCTTCCATCTCCTTAACTCGAGCCTTT
ATGGCCTCCAGTTCCGGGTCGATTTGCATGCTGCCCTCCTCCTCGACCTC
TGTGGCGATCTCAGTCTCTTGCTCCCCGTTCGTCTCCTCCAATGACTCCA
GGAGCTGATCCTCGTTCAATGTGATATCTTCATCGGCCATGTCGACTGAT
AACT

BO13477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2163-PA 675 Pabp2-RA 1..672 690..19 3310 99.7 Minus
CG2163-PB 675 Pabp2-RB 1..672 690..19 3310 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1378 CG2163-RB 407..1078 690..19 3330 99.7 Minus
Pabp2-RA 1869 CG2163-RA 407..1078 690..19 3330 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 593..188 2000 99.5 Minus
2R 25286936 2R 8132940..8133076 191..55 685 100 Minus
2R 25286936 2R 8132034..8132133 690..591 500 100 Minus
2R 25286936 2R 8133141..8133177 55..19 185 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:08:16 has no hits.

BO13477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:25 Download gff for BO13477.3prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-PA 1..675 16..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:34 Download gff for BO13477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2163-PB 1..675 16..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:46 Download gff for BO13477.3prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1078 19..697 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:28 Download gff for BO13477.3prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1078 19..697 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:28 Download gff for BO13477.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8132030..8132132 592..697 97 -> Minus
2R 8132390..8132791 190..591 99 -> Minus
2R 8132942..8133075 56..189 100 -> Minus
2R 8133141..8133177 19..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:46 Download gff for BO13477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4019535..4019637 592..697 97 -> Minus
arm_2R 4019895..4020296 190..591 99 -> Minus
arm_2R 4020447..4020580 56..189 100 -> Minus
arm_2R 4020646..4020682 19..55 100   Minus

BO13477.5prime Sequence

704 bp (703 high quality bases) assembled on 2006-05-29

> BO13477.5prime
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACGCAAGCTTTCTA
GACC

BO13477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2163-PA 675 Pabp2-RA 1..672 17..688 3310 99.7 Plus
CG2163-PB 675 Pabp2-RB 1..672 17..688 3310 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1378 CG2163-RB 407..1078 17..688 3330 99.7 Plus
Pabp2-RA 1869 CG2163-RA 407..1078 17..688 3330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 114..519 2000 99.5 Plus
2R 25286936 2R 8132940..8133076 516..652 685 100 Plus
2R 25286936 2R 8132034..8132133 17..116 500 100 Plus
2R 25286936 2R 8133141..8133177 652..688 185 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:20:52 has no hits.

BO13477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:26 Download gff for BO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:35 Download gff for BO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2163-PB 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:41 Download gff for BO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1078 10..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:26 Download gff for BO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 403..1078 10..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:26 Download gff for BO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8132030..8132132 10..115 97 -> Plus
2R 8132390..8132791 116..517 99 -> Plus
2R 8132942..8133075 518..651 100 -> Plus
2R 8133141..8133177 652..688 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:41 Download gff for BO13477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4019535..4019637 10..115 97 -> Plus
arm_2R 4019895..4020296 116..517 99 -> Plus
arm_2R 4020447..4020580 518..651 100 -> Plus
arm_2R 4020646..4020682 652..688 100   Plus

BO13477.complete Sequence

706 bp assembled on 2008-08-15

GenBank Submission: FJ632790

> BO13477.complete
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACGCAAGCTTTCTA
GACCAT

BO13477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 675 CG2163-PB 1..672 17..688 3330 99.7 Plus
Pabp2-RA 675 CG2163-PA 1..672 17..688 3330 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-RB 1378 CG2163-RB 407..1078 17..688 3330 99.7 Plus
Pabp2-RA 1869 CG2163-RA 407..1078 17..688 3330 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8132388..8132793 114..519 2000 99.5 Plus
2R 25286936 2R 8132940..8133076 516..652 685 100 Plus
2R 25286936 2R 8132034..8132133 17..116 500 100 Plus
2R 25286936 2R 8133141..8133177 652..688 185 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:30:55 has no hits.

BO13477.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:49 Download gff for BO13477.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 421..1096 10..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:46 Download gff for BO13477.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 407..1078 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:05 Download gff for BO13477.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RB 425..1096 17..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:47 Download gff for BO13477.complete
Subject Subject Range Query Range Percent Splice Strand
Pabp2-RA 407..1078 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:47 Download gff for BO13477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8132034..8132132 17..115 100 -> Plus
2R 8132390..8132791 116..517 99 -> Plus
2R 8132942..8133075 518..651 100 -> Plus
2R 8133141..8133177 652..690 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:46 Download gff for BO13477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4019539..4019637 17..115 100 -> Plus
arm_2R 4019895..4020296 116..517 99 -> Plus
arm_2R 4020447..4020580 518..651 100 -> Plus
arm_2R 4020646..4020682 652..690 94   Plus

BO13477.pep Sequence

Translation from 16 to 706

> BO13477.pep
MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR
VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV
GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV
ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC
CHSTFRGARRAMGYRGRANYYAPYASFLDH

BO13477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pabp2-PB 224 CG2163-PB 1..224 1..224 1149 100 Plus
Pabp2-PA 224 CG2163-PA 1..224 1..224 1149 100 Plus