Clone Sequence Records
BO13477.3prime Sequence
704 bp (703 high quality bases) assembled on 2006-05-08
> BO13477.3prime
ATGGTCTAGAAAGCTTGCGTAAGGAGCGTAGTAATTGGCGCGACCACGGT
AACCCATAGCTCTTCGGGCGCCTCGGAAGGTGGAGTGACAGCACGCCCGG
GAGACACGGGCTCCTCGACCCCGGAAGCTGCCGCGTGCGAAACGGTTTGT
GGTGGAGAGTCCAGGGCGGTTTGTGCGCTTCGACATTACCTTTATTTGAC
GCCCCCGGAAGAGGGTTTCGTTCATGGCCAATGCCGTCTCGACAAACTCC
TTGGAACCAAACTCAATGTATGCGAATCCCTTGGGGTGCCCGTCAGCCTT
GTTGCAGAGTATGGTTACTCGGTTGATTGTGCCGCATCCGTGGAAGTGGG
CCTCCAGTTCCTCGGCCGATGCGCCGTAGTCCACATTGCCCACGTAGACG
GACCGCGTGTCGATTTCCTGCTTCTCCTCAAGAGAAAGCGGGACTGTGGC
CAAGCCGGTGGTAGACCCACCGGCCATTTGTTTGTCCACCTCCGACTGCA
TCTGCTTTATCTTCTCGGCCTCCTCTTCCATCTCCTTAACTCGAGCCTTT
ATGGCCTCCAGTTCCGGGTCGATTTGCATGCTGCCCTCCTCCTCGACCTC
TGTGGCGATCTCAGTCTCTTGCTCCCCGTTCGTCTCCTCCAATGACTCCA
GGAGCTGATCCTCGTTCAATGTGATATCTTCATCGGCCATGTCGACTGAT
AACT
BO13477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2163-PA | 675 | Pabp2-RA | 1..672 | 690..19 | 3310 | 99.7 | Minus |
CG2163-PB | 675 | Pabp2-RB | 1..672 | 690..19 | 3310 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 1378 | CG2163-RB | 407..1078 | 690..19 | 3330 | 99.7 | Minus |
Pabp2-RA | 1869 | CG2163-RA | 407..1078 | 690..19 | 3330 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8132388..8132793 | 593..188 | 2000 | 99.5 | Minus |
2R | 25286936 | 2R | 8132940..8133076 | 191..55 | 685 | 100 | Minus |
2R | 25286936 | 2R | 8132034..8132133 | 690..591 | 500 | 100 | Minus |
2R | 25286936 | 2R | 8133141..8133177 | 55..19 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:16 has no hits.
BO13477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:25 Download gff for
BO13477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-PA | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:34 Download gff for
BO13477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2163-PB | 1..675 | 16..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:46 Download gff for
BO13477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1078 | 19..697 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:28 Download gff for
BO13477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1078 | 19..697 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:28 Download gff for
BO13477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8132030..8132132 | 592..697 | 97 | -> | Minus |
2R | 8132390..8132791 | 190..591 | 99 | -> | Minus |
2R | 8132942..8133075 | 56..189 | 100 | -> | Minus |
2R | 8133141..8133177 | 19..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:46 Download gff for
BO13477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4019535..4019637 | 592..697 | 97 | -> | Minus |
arm_2R | 4019895..4020296 | 190..591 | 99 | -> | Minus |
arm_2R | 4020447..4020580 | 56..189 | 100 | -> | Minus |
arm_2R | 4020646..4020682 | 19..55 | 100 | | Minus |
BO13477.5prime Sequence
704 bp (703 high quality bases) assembled on 2006-05-29
> BO13477.5prime
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACGCAAGCTTTCTA
GACC
BO13477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2163-PA | 675 | Pabp2-RA | 1..672 | 17..688 | 3310 | 99.7 | Plus |
CG2163-PB | 675 | Pabp2-RB | 1..672 | 17..688 | 3310 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 1378 | CG2163-RB | 407..1078 | 17..688 | 3330 | 99.7 | Plus |
Pabp2-RA | 1869 | CG2163-RA | 407..1078 | 17..688 | 3330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8132388..8132793 | 114..519 | 2000 | 99.5 | Plus |
2R | 25286936 | 2R | 8132940..8133076 | 516..652 | 685 | 100 | Plus |
2R | 25286936 | 2R | 8132034..8132133 | 17..116 | 500 | 100 | Plus |
2R | 25286936 | 2R | 8133141..8133177 | 652..688 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:20:52 has no hits.
BO13477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:26 Download gff for
BO13477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:35 Download gff for
BO13477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2163-PB | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:41 Download gff for
BO13477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1078 | 10..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:26 Download gff for
BO13477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 403..1078 | 10..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:26 Download gff for
BO13477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8132030..8132132 | 10..115 | 97 | -> | Plus |
2R | 8132390..8132791 | 116..517 | 99 | -> | Plus |
2R | 8132942..8133075 | 518..651 | 100 | -> | Plus |
2R | 8133141..8133177 | 652..688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:41 Download gff for
BO13477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4019535..4019637 | 10..115 | 97 | -> | Plus |
arm_2R | 4019895..4020296 | 116..517 | 99 | -> | Plus |
arm_2R | 4020447..4020580 | 518..651 | 100 | -> | Plus |
arm_2R | 4020646..4020682 | 652..688 | 100 | | Plus |
BO13477.complete Sequence
706 bp assembled on 2008-08-15
GenBank Submission: FJ632790
> BO13477.complete
GAAGTTATCAGTCGACATGGCCGATGAAGATATCACATTGAACGAGGATC
AGCTCCTGGAGTCATTGGAGGAGACGAACGGGGAGCAAGAGACTGAGATC
GCCACAGAGGTCGAGGAGGAGGGCAGCATGCAAATCGACCCGGAACTGGA
GGCCATAAAGGCTCGAGTTAAGGAGATGGAAGAGGAGGCCGAGAAGATAA
AGCAGATGCAGTCGGAGGTGGACAAACAAATGGCCGGTGGGTCTACCACC
GGCTTGGCCACAGTCCCGCTTTCTCTTGAGGAGAAGCAGGAAATCGACAC
GCGGTCCGTCTACGTGGGCAATGTGGACTACGGCGCATCGGCCGAGGAAC
TGGAGGCCCACTTCCACGGATGCGGCACAATCAACCGAGTAACCATACTC
TGCAACAAGGCTGACGGGCACCCCAAGGGATTCGCATACATTGAGTTTGG
TTCCAAGGAGTTTGTCGAGACGGCATTGGCCATGAACGAAACCCTCTTCC
GGGGGCGTCAAATAAAGGTAATGTCGAAGCGCACAAACCGCCCTGGACTC
TCCACCACAAACCGTTTCGCACGCGGCAGCTTCCGGGGTCGAGGAGCCCG
TGTCTCCCGGGCGTGCTGTCACTCCACCTTCCGAGGCGCCCGAAGAGCTA
TGGGTTACCGTGGTCGCGCCAATTACTACGCTCCTTACGCAAGCTTTCTA
GACCAT
BO13477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 675 | CG2163-PB | 1..672 | 17..688 | 3330 | 99.7 | Plus |
Pabp2-RA | 675 | CG2163-PA | 1..672 | 17..688 | 3330 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-RB | 1378 | CG2163-RB | 407..1078 | 17..688 | 3330 | 99.7 | Plus |
Pabp2-RA | 1869 | CG2163-RA | 407..1078 | 17..688 | 3330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8132388..8132793 | 114..519 | 2000 | 99.5 | Plus |
2R | 25286936 | 2R | 8132940..8133076 | 516..652 | 685 | 100 | Plus |
2R | 25286936 | 2R | 8132034..8132133 | 17..116 | 500 | 100 | Plus |
2R | 25286936 | 2R | 8133141..8133177 | 652..688 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:55 has no hits.
BO13477.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:49 Download gff for
BO13477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RB | 421..1096 | 10..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:46 Download gff for
BO13477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 407..1078 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:05 Download gff for
BO13477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RB | 425..1096 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:47 Download gff for
BO13477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pabp2-RA | 407..1078 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:47 Download gff for
BO13477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8132034..8132132 | 17..115 | 100 | -> | Plus |
2R | 8132390..8132791 | 116..517 | 99 | -> | Plus |
2R | 8132942..8133075 | 518..651 | 100 | -> | Plus |
2R | 8133141..8133177 | 652..690 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:46 Download gff for
BO13477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4019539..4019637 | 17..115 | 100 | -> | Plus |
arm_2R | 4019895..4020296 | 116..517 | 99 | -> | Plus |
arm_2R | 4020447..4020580 | 518..651 | 100 | -> | Plus |
arm_2R | 4020646..4020682 | 652..690 | 94 | | Plus |
BO13477.pep Sequence
Translation from 16 to 706
> BO13477.pep
MADEDITLNEDQLLESLEETNGEQETEIATEVEEEGSMQIDPELEAIKAR
VKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYV
GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFV
ETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRAC
CHSTFRGARRAMGYRGRANYYAPYASFLDH
BO13477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pabp2-PB | 224 | CG2163-PB | 1..224 | 1..224 | 1149 | 100 | Plus |
Pabp2-PA | 224 | CG2163-PA | 1..224 | 1..224 | 1149 | 100 | Plus |