Clone Sequence Records
BO13481.3prime Sequence
872 bp (819 high quality bases) assembled on 2006-05-08
> BO13481.3prime
ATGGTCTAGAAAGCTTGCGCTGGACGCGCCCAGTTGATTCTTCATATGGG
CAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCGCCG
GTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGTGCG
CGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTCCGC
CGCCCAGCAATCCACCAGCGGTATTCTGCGCCCCAGCCGCTCCCGTCGGT
GAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATTGGC
CATCGATGCGAAGACCAGGCGCTCCTCATAGTCGTACTCGCAGAGTATCT
TGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTACAC
TGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACGCAT
CACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGCCCG
TGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTGCCC
TTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCAGCC
GCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGGGCGCGGAGGAGAT
AGCGGTCCTGGATGTGCTTGCCGCAGCCGGCGCACAATTGGCTGCCGTTG
TTGTTGTTATTGTTATTATTGTTGGCAGCGGCGGCGATGCTCTGGACATT
CCCGTTGCCATTGTTGCCGCCACCGGCACCGCCGGAGTTGACCACATTGA
CCACGTTCCCATTGCCATTGGGATTGGGCCCGTTTGTCTGGCCACCGCTG
TTCATGCCGGCGTTGCTTTGCT
BO13481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PA | 942 | Bx-RA | 86..939 | 872..19 | 4220 | 99.7 | Minus |
CG6500-PB | 1155 | Bx-RB | 299..1152 | 872..19 | 4220 | 99.7 | Minus |
CG6500-PC | 942 | Bx-RC | 86..939 | 872..19 | 4220 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 848..1701 | 872..19 | 4240 | 99.8 | Minus |
Bx-RC | 3413 | CG44425-RC | 684..1537 | 872..19 | 4240 | 99.8 | Minus |
Bx-RB | 2051 | CG44425-RB | 405..1258 | 872..19 | 4240 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18570561..18570933 | 391..19 | 1865 | 100 | Minus |
X | 23542271 | X | 18566781..18567138 | 872..515 | 1760 | 99.4 | Minus |
X | 23542271 | X | 18567509..18567636 | 516..389 | 640 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 07:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 759..688 | 125 | 67.1 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 774..695 | 122 | 65 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 728..692 | 122 | 81.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 790..697 | 112 | 59.6 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 724..689 | 108 | 77.8 | Minus |
BO13481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:04:33 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:44 Download gff for
BO13481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PC | 86..942 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:45 Download gff for
BO13481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 405..1261 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:44:07 Download gff for
BO13481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 405..1261 | 15..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:44:07 Download gff for
BO13481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566781..18567138 | 515..872 | 99 | -> | Minus |
X | 18567511..18567636 | 389..514 | 100 | -> | Minus |
X | 18570564..18570936 | 15..388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:45 Download gff for
BO13481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460814..18461171 | 515..872 | 99 | -> | Minus |
arm_X | 18461544..18461669 | 389..514 | 100 | -> | Minus |
arm_X | 18464597..18464969 | 15..388 | 99 | | Minus |
BO13481.5prime Sequence
830 bp (829 high quality bases) assembled on 2006-05-29
> BO13481.5prime
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGCAGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGAC
CAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGAT
TCTGTGTGGGCGACCGTTTCTACCTGTGCG
BO13481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PB | 1155 | Bx-RB | 1..814 | 17..830 | 4070 | 100 | Plus |
CG6500-PA | 942 | Bx-RA | 1..601 | 230..830 | 3005 | 100 | Plus |
CG6500-PC | 942 | Bx-RC | 1..601 | 230..830 | 3005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RB | 2051 | CG44425-RB | 102..920 | 12..830 | 4080 | 99.9 | Plus |
Bx-RD | 2494 | CG44425-RD | 761..1363 | 228..830 | 3015 | 100 | Plus |
Bx-RC | 3413 | CG44425-RC | 597..1199 | 228..830 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 230..672 | 2215 | 100 | Plus |
X | 23542271 | X | 18566407..18566624 | 12..229 | 1075 | 99.5 | Plus |
X | 23542271 | X | 18567509..18567636 | 671..798 | 640 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 23:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 428..499 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 413..492 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 459..495 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 397..490 | 112 | 59.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 463..498 | 108 | 77.8 | Plus |
BO13481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:04:34 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:45 Download gff for
BO13481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PB | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:12 Download gff for
BO13481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 100..920 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:52:51 Download gff for
BO13481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 100..920 | 9..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:52:51 Download gff for
BO13481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566405..18566624 | 9..229 | 99 | -> | Plus |
X | 18566696..18567138 | 230..672 | 100 | -> | Plus |
X | 18567511..18567636 | 673..798 | 100 | -> | Plus |
X | 18570564..18570595 | 799..830 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:12 Download gff for
BO13481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460438..18460657 | 9..229 | 99 | -> | Plus |
arm_X | 18460729..18461171 | 230..672 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 673..798 | 100 | -> | Plus |
arm_X | 18464597..18464628 | 799..830 | 100 | | Plus |
BO13481.complete Sequence
1186 bp assembled on 2006-10-11
GenBank Submission: FJ632791
> BO13481.complete
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGCAGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGAC
CAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGAT
TCTGTGTGGGCGACCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAG
TACGACTATGAGGAGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGAT
GCTCAAGCGACACGTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGG
CTGGGGCGCAGAATACCGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGC
GGCAATGTGAATGGCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGA
TCACAATAACAACAACAATGGCCCACAGACACCGACCGGCGGTGGCTCAC
CGTTTGCCGCTGCTGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAAT
CAACTGGGCGCGTCCAGCGCAAGCTTTCTAGACCAT
BO13481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RB | 1155 | CG44425-PB | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Bx-RD | 1275 | CG44425-PD | 1..939 | 230..1168 | 4695 | 100 | Plus |
Bx-RC | 942 | CG44425-PC | 1..939 | 230..1168 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RB | 2051 | CG44425-RB | 102..1258 | 12..1168 | 5770 | 99.9 | Plus |
Bx-RD | 2494 | CG44425-RD | 761..1701 | 228..1168 | 4705 | 100 | Plus |
Bx-RC | 3413 | CG44425-RC | 597..1537 | 228..1168 | 4705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 230..672 | 2215 | 100 | Plus |
X | 23542271 | X | 18570561..18570933 | 796..1168 | 1865 | 100 | Plus |
X | 23542271 | X | 18566407..18566624 | 12..229 | 1075 | 99.5 | Plus |
X | 23542271 | X | 18567509..18567636 | 671..798 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 428..499 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 413..492 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 459..495 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 397..490 | 112 | 59.6 | Plus |
BO13481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:15 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 1..1155 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:36 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 69..1230 | 9..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:33 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 107..1258 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:15 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 69..1230 | 9..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:57 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 107..1258 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:57 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566412..18566624 | 17..229 | 100 | -> | Plus |
X | 18566696..18567138 | 230..672 | 100 | -> | Plus |
X | 18567511..18567636 | 673..798 | 100 | -> | Plus |
X | 18570564..18570933 | 799..1170 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:33 Download gff for
BO13481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460445..18460657 | 17..229 | 100 | -> | Plus |
arm_X | 18460729..18461171 | 230..672 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 673..798 | 100 | -> | Plus |
arm_X | 18464597..18464966 | 799..1170 | 99 | | Plus |
BO13481.pep Sequence
Translation from 16 to 1186
> BO13481.pep
MEYLYNASMHCEDEERVNFYNMDKFFVPHVQSIELEQQAILRQYVPQYAY
QWPWGFAPSAYSYYQGFGSLNMMTMDITKTEPGLVGLSSNQQQQQQQQSQ
QSNAGMNSGGQNNGPNPNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAAN
NNNNNNNNGSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEV
GSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHL
ECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPMLKRHV
SSLGQGSPTGAAGAQNTAGGLLGGGPGGGNVNGVGMVNGPRTPGDHNNNN
NGPQTPTGGGSPFAAAAAAAAAAAHMKNQLGASSASFLDH
BO13481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-PB | 384 | CG44425-PB | 1..384 | 1..384 | 2106 | 100 | Plus |
Bx-PC | 313 | CG44425-PC | 1..313 | 72..384 | 1709 | 100 | Plus |
Bx-PA | 313 | CG44425-PA | 1..313 | 72..384 | 1709 | 100 | Plus |
Bx-PF | 383 | CG44425-PF | 71..383 | 72..384 | 1709 | 100 | Plus |
Bx-PD | 424 | CG44425-PD | 1..313 | 72..384 | 1709 | 100 | Plus |