Clone BO13481 Report

Search the DGRC for BO13481

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptBx-RB
Protein status:BO13481.pep: validated full length
Sequenced Size:1186

Clone Sequence Records

BO13481.3prime Sequence

872 bp (819 high quality bases) assembled on 2006-05-08

> BO13481.3prime
ATGGTCTAGAAAGCTTGCGCTGGACGCGCCCAGTTGATTCTTCATATGGG
CAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCGCCG
GTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGTGCG
CGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTCCGC
CGCCCAGCAATCCACCAGCGGTATTCTGCGCCCCAGCCGCTCCCGTCGGT
GAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATTGGC
CATCGATGCGAAGACCAGGCGCTCCTCATAGTCGTACTCGCAGAGTATCT
TGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTACAC
TGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACGCAT
CACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGCCCG
TGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTGCCC
TTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCAGCC
GCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGGGCGCGGAGGAGAT
AGCGGTCCTGGATGTGCTTGCCGCAGCCGGCGCACAATTGGCTGCCGTTG
TTGTTGTTATTGTTATTATTGTTGGCAGCGGCGGCGATGCTCTGGACATT
CCCGTTGCCATTGTTGCCGCCACCGGCACCGCCGGAGTTGACCACATTGA
CCACGTTCCCATTGCCATTGGGATTGGGCCCGTTTGTCTGGCCACCGCTG
TTCATGCCGGCGTTGCTTTGCT

BO13481.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6500-PA 942 Bx-RA 86..939 872..19 4220 99.7 Minus
CG6500-PB 1155 Bx-RB 299..1152 872..19 4220 99.7 Minus
CG6500-PC 942 Bx-RC 86..939 872..19 4220 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RD 2494 CG44425-RD 848..1701 872..19 4240 99.8 Minus
Bx-RC 3413 CG44425-RC 684..1537 872..19 4240 99.8 Minus
Bx-RB 2051 CG44425-RB 405..1258 872..19 4240 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18570561..18570933 391..19 1865 100 Minus
X 23542271 X 18566781..18567138 872..515 1760 99.4 Minus
X 23542271 X 18567509..18567636 516..389 640 100 Minus
Blast to na_te.dros performed 2015-02-03 07:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 759..688 125 67.1 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 774..695 122 65 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 728..692 122 81.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 790..697 112 59.6 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2649..2684 724..689 108 77.8 Minus

BO13481.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:04:33 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:44 Download gff for BO13481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6500-PC 86..942 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:45 Download gff for BO13481.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 405..1261 15..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:44:07 Download gff for BO13481.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 405..1261 15..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:44:07 Download gff for BO13481.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18566781..18567138 515..872 99 -> Minus
X 18567511..18567636 389..514 100 -> Minus
X 18570564..18570936 15..388 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:45 Download gff for BO13481.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460814..18461171 515..872 99 -> Minus
arm_X 18461544..18461669 389..514 100 -> Minus
arm_X 18464597..18464969 15..388 99   Minus

BO13481.5prime Sequence

830 bp (829 high quality bases) assembled on 2006-05-29

> BO13481.5prime
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGCAGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGAC
CAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGAT
TCTGTGTGGGCGACCGTTTCTACCTGTGCG

BO13481.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6500-PB 1155 Bx-RB 1..814 17..830 4070 100 Plus
CG6500-PA 942 Bx-RA 1..601 230..830 3005 100 Plus
CG6500-PC 942 Bx-RC 1..601 230..830 3005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RB 2051 CG44425-RB 102..920 12..830 4080 99.9 Plus
Bx-RD 2494 CG44425-RD 761..1363 228..830 3015 100 Plus
Bx-RC 3413 CG44425-RC 597..1199 228..830 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18566696..18567138 230..672 2215 100 Plus
X 23542271 X 18566407..18566624 12..229 1075 99.5 Plus
X 23542271 X 18567509..18567636 671..798 640 100 Plus
Blast to na_te.dros performed 2015-02-09 23:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 428..499 125 67.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 413..492 122 65 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 459..495 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 397..490 112 59.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2649..2684 463..498 108 77.8 Plus

BO13481.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 06:04:34 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:45 Download gff for BO13481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6500-PB 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:26:12 Download gff for BO13481.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 100..920 9..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:52:51 Download gff for BO13481.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 100..920 9..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:52:51 Download gff for BO13481.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18566405..18566624 9..229 99 -> Plus
X 18566696..18567138 230..672 100 -> Plus
X 18567511..18567636 673..798 100 -> Plus
X 18570564..18570595 799..830 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:26:12 Download gff for BO13481.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460438..18460657 9..229 99 -> Plus
arm_X 18460729..18461171 230..672 100 -> Plus
arm_X 18461544..18461669 673..798 100 -> Plus
arm_X 18464597..18464628 799..830 100   Plus

BO13481.complete Sequence

1186 bp assembled on 2006-10-11

GenBank Submission: FJ632791

> BO13481.complete
GAAGTTATCAGTCGACATGGAGTACCTCTACAACGCTAGTATGCATTGCG
AAGATGAAGAACGCGTCAATTTCTACAACATGGACAAGTTCTTCGTGCCC
CACGTGCAGTCGATTGAGCTGGAGCAGCAGGCGATCCTGCGGCAATACGT
GCCCCAGTACGCTTATCAGTGGCCCTGGGGATTTGCCCCTTCCGCTTACA
GTTATTACCAGGGATTCGGTAGCCTTAATATGATGACTATGGACATTACC
AAAACCGAACCCGGTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCA
GCAGCAGCAGTCGCAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGA
ACAACGGGCCCAATCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAAC
TCCGGCGGTGCCGGTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCAT
CGCCGCCGCTGCCAACAATAATAACAATAACAACAACAACGGCAGCCAAT
TGTGCGCCGGCTGCGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCC
CTGGACATGCTGTGGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTG
CCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGC
TCTGCAAGCGGGACTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCC
GCCTGCAGCAAGGTGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGAC
CAATGTCTATCACTTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGAT
TCTGTGTGGGCGACCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAG
TACGACTATGAGGAGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGAT
GCTCAAGCGACACGTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGG
CTGGGGCGCAGAATACCGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGC
GGCAATGTGAATGGCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGA
TCACAATAACAACAACAATGGCCCACAGACACCGACCGGCGGTGGCTCAC
CGTTTGCCGCTGCTGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAAT
CAACTGGGCGCGTCCAGCGCAAGCTTTCTAGACCAT

BO13481.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RB 1155 CG44425-PB 1..1152 17..1168 5760 100 Plus
Bx-RD 1275 CG44425-PD 1..939 230..1168 4695 100 Plus
Bx-RC 942 CG44425-PC 1..939 230..1168 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RB 2051 CG44425-RB 102..1258 12..1168 5770 99.9 Plus
Bx-RD 2494 CG44425-RD 761..1701 228..1168 4705 100 Plus
Bx-RC 3413 CG44425-RC 597..1537 228..1168 4705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18566696..18567138 230..672 2215 100 Plus
X 23542271 X 18570561..18570933 796..1168 1865 100 Plus
X 23542271 X 18566407..18566624 12..229 1075 99.5 Plus
X 23542271 X 18567509..18567636 671..798 640 100 Plus
Blast to na_te.dros performed 2014-11-27 23:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 428..499 125 67.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 413..492 122 65 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 459..495 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 397..490 112 59.6 Plus

BO13481.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:15 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 1..1155 17..1172 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:36 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 69..1230 9..1172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:33 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 107..1258 17..1170 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:15 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 69..1230 9..1172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:57 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 107..1258 17..1170 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:57 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
X 18566412..18566624 17..229 100 -> Plus
X 18566696..18567138 230..672 100 -> Plus
X 18567511..18567636 673..798 100 -> Plus
X 18570564..18570933 799..1170 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:33 Download gff for BO13481.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460445..18460657 17..229 100 -> Plus
arm_X 18460729..18461171 230..672 100 -> Plus
arm_X 18461544..18461669 673..798 100 -> Plus
arm_X 18464597..18464966 799..1170 99   Plus

BO13481.pep Sequence

Translation from 16 to 1186

> BO13481.pep
MEYLYNASMHCEDEERVNFYNMDKFFVPHVQSIELEQQAILRQYVPQYAY
QWPWGFAPSAYSYYQGFGSLNMMTMDITKTEPGLVGLSSNQQQQQQQQSQ
QSNAGMNSGGQNNGPNPNGNGNVVNVVNSGGAGGGNNGNGNVQSIAAAAN
NNNNNNNNGSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEV
GSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARTNVYHL
ECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASMANHPMLKRHV
SSLGQGSPTGAAGAQNTAGGLLGGGPGGGNVNGVGMVNGPRTPGDHNNNN
NGPQTPTGGGSPFAAAAAAAAAAAHMKNQLGASSASFLDH

BO13481.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-PB 384 CG44425-PB 1..384 1..384 2106 100 Plus
Bx-PC 313 CG44425-PC 1..313 72..384 1709 100 Plus
Bx-PA 313 CG44425-PA 1..313 72..384 1709 100 Plus
Bx-PF 383 CG44425-PF 71..383 72..384 1709 100 Plus
Bx-PD 424 CG44425-PD 1..313 72..384 1709 100 Plus