Clone BO13483 Report

Search the DGRC for BO13483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG5828-RA
Protein status:BO13483.pep: Imported from assembly
Sequenced Size:1117

Clone Sequence Records

BO13483.5prime Sequence

933 bp (809 high quality bases) assembled on 2006-05-29

> BO13483.5prime
GAAGTTATCAGTCGACATGTACAGTAGCAGCTTGCTGCCGGATCCGGCTG
TCTATCAGCCGGACACCCTGGACCTGAACACGGATGGAAAGGCGGCGGAT
TACTGGTTCAACTGCTTCCGCGACATGGTGGCCAAGTTCGCGAAGGTGGC
GGCCAAGTCACAGGAGGAGGATCACACGGCCACCCAGCGGGCGGAGCAGT
TCCAGGCGGCGTATCTGCAGCGGCTGGAGGAGCACCAGCGTAATGTGCCA
GTCAACAAGGGCAAGGTGATTCTAGGCACCAGTGAGCTTCTCAAGCTAAA
CGAAACCCTGTTGCGCCGCTACGGATTTACAGATCCCTGGCTGAGACAAA
AGAGGCTGGAAAATGCATCGGCTGTTGCCCGCCTGAAGCAGCGTCTGCAG
GAATTGGATGCCCTGGCGGATGAGGACACAAGGTGGACGGAGCTGGTACG
CGGTGTCCTCGCCGGCAACATGTTTGACTGGGGCGCACAGGCCATATCTA
ACATACTGGAGCAGGACAGCAATTTCGGACTTCATTCAGCCCTGGATCGC
ATTGAGAAGCGACCCTGGTTGCTTGACAACCTGGACAGCTGGTTGAATCG
CCTCAAGGGCGAGCCACACAAGTGCGCCGTGGTCTTTGTGGACAACAGCG
GCGTGGATGTGGTTCTGGGTGTGCTTCCCTTTGTCCGTGGACTGCTGAAA
CGTGGCACCAAGGTGCTGCTCTGCGCCAACAGTGAACCTGCTCTAAATGA
TGTGACCAGCGAGGAGCTGAAATCCTTGCTGGACGACTGCTCGCGCGAGT
GTGAGGTCCTGGAGCAGGCCTGGTCAAAGGGACAACTACTGGTCTATGCA
AATGGACAGACTGGTCCCTGCCTGGATATGCGCACTCTCCCCAAGGAGCT
GTGCGACGCCATCGCCGCCAATGAAACTGAACT

BO13483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-PA 1086 CG5828-RA 1..914 17..930 4545 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-RB 1935 CG5828-RB 131..1044 17..930 4555 99.9 Plus
CG5828-RA 1428 CG5828-RA 95..1008 17..930 4555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5094106..5095019 17..930 4555 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 14:15:02 has no hits.

BO13483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:36 Download gff for BO13483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5828-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:50 Download gff for BO13483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5828-PA 1..917 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:13:15 Download gff for BO13483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 89..1011 11..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:19 Download gff for BO13483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 89..1011 11..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:19 Download gff for BO13483.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5094100..5095022 11..933 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:13:15 Download gff for BO13483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5094100..5095022 11..933 99   Plus

BO13483.complete Sequence

1117 bp assembled on 2011-06-28

GenBank Submission: KX797433

> BO13483.complete
GAAGTTATCAGTCGACATGTACAGTAGCAGCTTGCTGCCGGATCCGGCTG
TCTATCAGCCGGACACCCTGGACCTGAACACGGATGGAAAGGCGGCGGAT
TACTGGTTCAACTGCTTCCGCGACATGGTGGCCAAGTTCGCGAAGGTGGC
GGCCAAGTCACAGGAGGAGGATCACACGGCCACCCAGCGGGCGGAGCAGT
TCCAGGCGGCGTATCTGCAGCGGCTGGAGGAGCACCAGCGTAATGTGCCA
GTCAACAAGGGCAAGGTGATTCTAGGCACCAGTGAGCTTCTCAAGCTAAA
CGAAACCCTGTTGCGCCGCTACGGATTTACAGATCCCTGGCTGAGACAAA
AGAGGCTGGAAAATGCATCGGCTGTTGCCCGCCTGAAGCAGCGTCTGCAG
GAATTGGATGCCCTGGCGGATGAGGACACAAGGTGGACGGAGCTGGTACG
CGGTGTCCTCGCCGGCAACATGTTTGACTGGGGCGCACAGGCCATATCTA
ACATACTGGAGCAGGACAGCAATTTCGGACTTCATTCAGCCCTGGATCGC
ATTGAGAAGCGACCCTGGTTGCTTGACAACCTGGACAGCTGGTTGAATCG
CCTCAAGGGCGAGCCACACAAGTGCGCCGTGGTCTTTGTGGACAACAGCG
GCGTGGATGTGGTTCTGGGTGTGCTTCCCTTTGTCCGTGGACTGCTGAAA
CGTGGCACCAAGGTGCTGCTCTGCGCCAACAGTGAACCTGCTCTAAATGA
TGTGACCAGCGAGGAGCTGAAATCCTTGCTGGACGACTGCTCGCGCGAGT
GTGAGGTCCTGGAGCAGGCCTGGTCAAAGGGACAACTACTGGTCTATGCA
AATGGACAGACTGGTCCCTGCCTGGATATGCGCACTCTCCCCAAGGAGCT
GTGCGACGCCATCGCCGCCAATGAGACTGACCTGCTTGTGATTGAGGGCA
TGGGACGCGCCCTGCACACAAATCTGAATGCCCGCTTCGGCTGCGAGACC
CTCAAGTTGGCCGTGATAAAAAACAAATGGCTGGCCAAGTACCTGGGCGG
CGAGGATATGTTCGCCGTCGTCTGCAAGTTCGAACCGGCTGCGCCCAGCG
CAAGCTTTCTAGACCAT

BO13483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-RB 1086 CG5828-PB 1..1083 17..1099 5415 100 Plus
CG5828-RA 1086 CG5828-PA 1..1083 17..1099 5415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-RB 1935 CG5828-RB 131..1213 17..1099 5415 100 Plus
CG5828-RA 1428 CG5828-RA 95..1177 17..1099 5415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5094106..5095188 17..1099 5415 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:05:42 has no hits.

BO13483.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:05 Download gff for BO13483.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 86..1168 17..1101 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:12 Download gff for BO13483.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 95..1177 17..1101 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:06 Download gff for BO13483.complete
Subject Subject Range Query Range Percent Splice Strand
CG5828-RA 95..1177 17..1101 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:06 Download gff for BO13483.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5094106..5095188 17..1101 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:12 Download gff for BO13483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5094106..5095188 17..1101 99   Plus

BO13483.pep Sequence

Translation from 16 to 1117

> BO13483.pep
MYSSSLLPDPAVYQPDTLDLNTDGKAADYWFNCFRDMVAKFAKVAAKSQE
EDHTATQRAEQFQAAYLQRLEEHQRNVPVNKGKVILGTSELLKLNETLLR
RYGFTDPWLRQKRLENASAVARLKQRLQELDALADEDTRWTELVRGVLAG
NMFDWGAQAISNILEQDSNFGLHSALDRIEKRPWLLDNLDSWLNRLKGEP
HKCAVVFVDNSGVDVVLGVLPFVRGLLKRGTKVLLCANSEPALNDVTSEE
LKSLLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIA
ANETDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFA
VVCKFEPAAPSASFLDH

BO13483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5828-PB 361 CG5828-PB 1..361 1..361 1885 100 Plus
CG5828-PA 361 CG5828-PA 1..361 1..361 1885 100 Plus