Clone Sequence Records
BO13483.5prime Sequence
933 bp (809 high quality bases) assembled on 2006-05-29
> BO13483.5prime
GAAGTTATCAGTCGACATGTACAGTAGCAGCTTGCTGCCGGATCCGGCTG
TCTATCAGCCGGACACCCTGGACCTGAACACGGATGGAAAGGCGGCGGAT
TACTGGTTCAACTGCTTCCGCGACATGGTGGCCAAGTTCGCGAAGGTGGC
GGCCAAGTCACAGGAGGAGGATCACACGGCCACCCAGCGGGCGGAGCAGT
TCCAGGCGGCGTATCTGCAGCGGCTGGAGGAGCACCAGCGTAATGTGCCA
GTCAACAAGGGCAAGGTGATTCTAGGCACCAGTGAGCTTCTCAAGCTAAA
CGAAACCCTGTTGCGCCGCTACGGATTTACAGATCCCTGGCTGAGACAAA
AGAGGCTGGAAAATGCATCGGCTGTTGCCCGCCTGAAGCAGCGTCTGCAG
GAATTGGATGCCCTGGCGGATGAGGACACAAGGTGGACGGAGCTGGTACG
CGGTGTCCTCGCCGGCAACATGTTTGACTGGGGCGCACAGGCCATATCTA
ACATACTGGAGCAGGACAGCAATTTCGGACTTCATTCAGCCCTGGATCGC
ATTGAGAAGCGACCCTGGTTGCTTGACAACCTGGACAGCTGGTTGAATCG
CCTCAAGGGCGAGCCACACAAGTGCGCCGTGGTCTTTGTGGACAACAGCG
GCGTGGATGTGGTTCTGGGTGTGCTTCCCTTTGTCCGTGGACTGCTGAAA
CGTGGCACCAAGGTGCTGCTCTGCGCCAACAGTGAACCTGCTCTAAATGA
TGTGACCAGCGAGGAGCTGAAATCCTTGCTGGACGACTGCTCGCGCGAGT
GTGAGGTCCTGGAGCAGGCCTGGTCAAAGGGACAACTACTGGTCTATGCA
AATGGACAGACTGGTCCCTGCCTGGATATGCGCACTCTCCCCAAGGAGCT
GTGCGACGCCATCGCCGCCAATGAAACTGAACT
BO13483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5828-PA | 1086 | CG5828-RA | 1..914 | 17..930 | 4545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5828-RB | 1935 | CG5828-RB | 131..1044 | 17..930 | 4555 | 99.9 | Plus |
CG5828-RA | 1428 | CG5828-RA | 95..1008 | 17..930 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5094106..5095019 | 17..930 | 4555 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:15:02 has no hits.
BO13483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:36 Download gff for
BO13483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:50 Download gff for
BO13483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-PA | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:13:15 Download gff for
BO13483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-RA | 89..1011 | 11..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:19 Download gff for
BO13483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-RA | 89..1011 | 11..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:19 Download gff for
BO13483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5094100..5095022 | 11..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:13:15 Download gff for
BO13483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5094100..5095022 | 11..933 | 99 | | Plus |
BO13483.complete Sequence
1117 bp assembled on 2011-06-28
GenBank Submission: KX797433
> BO13483.complete
GAAGTTATCAGTCGACATGTACAGTAGCAGCTTGCTGCCGGATCCGGCTG
TCTATCAGCCGGACACCCTGGACCTGAACACGGATGGAAAGGCGGCGGAT
TACTGGTTCAACTGCTTCCGCGACATGGTGGCCAAGTTCGCGAAGGTGGC
GGCCAAGTCACAGGAGGAGGATCACACGGCCACCCAGCGGGCGGAGCAGT
TCCAGGCGGCGTATCTGCAGCGGCTGGAGGAGCACCAGCGTAATGTGCCA
GTCAACAAGGGCAAGGTGATTCTAGGCACCAGTGAGCTTCTCAAGCTAAA
CGAAACCCTGTTGCGCCGCTACGGATTTACAGATCCCTGGCTGAGACAAA
AGAGGCTGGAAAATGCATCGGCTGTTGCCCGCCTGAAGCAGCGTCTGCAG
GAATTGGATGCCCTGGCGGATGAGGACACAAGGTGGACGGAGCTGGTACG
CGGTGTCCTCGCCGGCAACATGTTTGACTGGGGCGCACAGGCCATATCTA
ACATACTGGAGCAGGACAGCAATTTCGGACTTCATTCAGCCCTGGATCGC
ATTGAGAAGCGACCCTGGTTGCTTGACAACCTGGACAGCTGGTTGAATCG
CCTCAAGGGCGAGCCACACAAGTGCGCCGTGGTCTTTGTGGACAACAGCG
GCGTGGATGTGGTTCTGGGTGTGCTTCCCTTTGTCCGTGGACTGCTGAAA
CGTGGCACCAAGGTGCTGCTCTGCGCCAACAGTGAACCTGCTCTAAATGA
TGTGACCAGCGAGGAGCTGAAATCCTTGCTGGACGACTGCTCGCGCGAGT
GTGAGGTCCTGGAGCAGGCCTGGTCAAAGGGACAACTACTGGTCTATGCA
AATGGACAGACTGGTCCCTGCCTGGATATGCGCACTCTCCCCAAGGAGCT
GTGCGACGCCATCGCCGCCAATGAGACTGACCTGCTTGTGATTGAGGGCA
TGGGACGCGCCCTGCACACAAATCTGAATGCCCGCTTCGGCTGCGAGACC
CTCAAGTTGGCCGTGATAAAAAACAAATGGCTGGCCAAGTACCTGGGCGG
CGAGGATATGTTCGCCGTCGTCTGCAAGTTCGAACCGGCTGCGCCCAGCG
CAAGCTTTCTAGACCAT
BO13483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5828-RB | 1086 | CG5828-PB | 1..1083 | 17..1099 | 5415 | 100 | Plus |
CG5828-RA | 1086 | CG5828-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5828-RB | 1935 | CG5828-RB | 131..1213 | 17..1099 | 5415 | 100 | Plus |
CG5828-RA | 1428 | CG5828-RA | 95..1177 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5094106..5095188 | 17..1099 | 5415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:05:42 has no hits.
BO13483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:05 Download gff for
BO13483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-RA | 86..1168 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:12 Download gff for
BO13483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-RA | 95..1177 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:06 Download gff for
BO13483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5828-RA | 95..1177 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:06 Download gff for
BO13483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5094106..5095188 | 17..1101 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:12 Download gff for
BO13483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5094106..5095188 | 17..1101 | 99 | | Plus |
BO13483.pep Sequence
Translation from 16 to 1117
> BO13483.pep
MYSSSLLPDPAVYQPDTLDLNTDGKAADYWFNCFRDMVAKFAKVAAKSQE
EDHTATQRAEQFQAAYLQRLEEHQRNVPVNKGKVILGTSELLKLNETLLR
RYGFTDPWLRQKRLENASAVARLKQRLQELDALADEDTRWTELVRGVLAG
NMFDWGAQAISNILEQDSNFGLHSALDRIEKRPWLLDNLDSWLNRLKGEP
HKCAVVFVDNSGVDVVLGVLPFVRGLLKRGTKVLLCANSEPALNDVTSEE
LKSLLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIA
ANETDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFA
VVCKFEPAAPSASFLDH
BO13483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5828-PB | 361 | CG5828-PB | 1..361 | 1..361 | 1885 | 100 | Plus |
CG5828-PA | 361 | CG5828-PA | 1..361 | 1..361 | 1885 | 100 | Plus |