Clone BO13484 Report

Search the DGRC for BO13484

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG17600-RB
Protein status:BO13484.pep: validated not full length
Sequenced Size:658

Clone Sequence Records

BO13484.3prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-08

> BO13484.3prime
ATGGTCTAGAAAGCTTGCCATCACCACATCCCGGCAAACGATCTTCGTTT
TGAAGGATGCCCTCTGACCGCCGTACAAGTCCGAGGAGGCAGACGACGAA
TAGTCGACGTGACTGCCCGCCTGTGACTGTTCTTGCCTGGCCAAAAAGCT
ATCAGCTATGGCTCGATCTAGACCCGTATACTGGAAATTGGGAGCACCGT
CCAGGACATCCGCTTCCGATTTTCGGCGCTGCCGGCGATTGGCATCAGAC
TTTCCCGCCCGCCGCCGTCTTCGCTGCCCATTGATCTCCGCTGACTTTGT
GCTCTTGTGAGTCCGGTATGTCCCGCTTAGGCTAGCCGGGTGGGCGTAGG
TCACGGATCCGGGCCCAGGTCGCATGTAGGGAAGGGTCATTCCACGGTAC
TGCGCCGGCAGCGGGGGCACGGGAAGCAGAAGTCCAGCTCTGGCGCCCGG
AGGCGGAGGTGGCAAGCGTGTGGGCGGTGGTGGTGCCATCCCATTGCCAG
CGGTGGAGGGAATGAGCATGATCTGCCGCGATGGAGGCGTCAGTTTGCGG
ACTGTTGGCGGCAGGCTTCCCATCTGGGTGGCATACATCCACATAGCCGC
TAGCTTCTCGGTGTTCACCTTTTCACTGCCATTCAGAGACATGTCGACTG
ATAACT

BO13484.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 1803 CG17600-RA 1177..1800 642..19 3120 100 Minus
CG17600-PB 627 CG17600-RB 1..624 642..19 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 973 CG17600-RC 141..764 642..19 3120 100 Minus
CG17600-RB 1069 CG17600-RB 237..860 642..19 3120 100 Minus
CG17600-RA 2470 CG17600-RA 1638..2261 642..19 3120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541815 490..19 2360 100 Minus
X 23542271 X 22540938..22541068 620..490 655 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:20:10 has no hits.

BO13484.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:37 Download gff for BO13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PB 1..627 16..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:51 Download gff for BO13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PB 1..627 16..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:58 Download gff for BO13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2261 19..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:28 Download gff for BO13484.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2261 19..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:28 Download gff for BO13484.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22540940..22541068 490..618 100 -> Minus
X 22541345..22541815 19..489 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:58 Download gff for BO13484.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21942776..21942904 490..618 100 -> Minus
arm_X 21943181..21943651 19..489 100   Minus

BO13484.5prime Sequence

656 bp (655 high quality bases) assembled on 2006-05-30

> BO13484.5prime
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGGCAAGCTTTC
TAGACC

BO13484.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PA 1803 CG17600-RA 1177..1800 17..640 3120 100 Plus
CG17600-PB 627 CG17600-RB 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 973 CG17600-RC 141..764 17..640 3120 100 Plus
CG17600-RB 1069 CG17600-RB 237..860 17..640 3120 100 Plus
CG17600-RA 2470 CG17600-RA 1638..2261 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541815 169..640 2360 100 Plus
X 23542271 X 22540938..22541068 39..169 655 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:16:43 has no hits.

BO13484.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:38 Download gff for BO13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PB 1..627 17..643 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:52 Download gff for BO13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-PB 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:05 Download gff for BO13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2261 7..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:45 Download gff for BO13484.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1629..2261 7..640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:45 Download gff for BO13484.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22540940..22541068 41..169 100 -> Plus
X 22541345..22541815 170..640 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:05 Download gff for BO13484.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21942776..21942904 41..169 100 -> Plus
arm_X 21943181..21943651 170..640 100   Plus

BO13484.complete Sequence

658 bp assembled on 2006-10-11

GenBank Submission: FJ632792

> BO13484.complete
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGGCAAGCTTTC
TAGACCAT

BO13484.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 627 CG17600-PC 1..624 17..640 3120 100 Plus
CG17600-RB 627 CG17600-PB 1..624 17..640 3120 100 Plus
CG17600-RA 1803 CG17600-PA 1177..1800 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-RC 973 CG17600-RC 141..764 17..640 3120 100 Plus
CG17600-RB 1069 CG17600-RB 237..860 17..640 3120 100 Plus
CG17600-RA 2470 CG17600-RA 1638..2261 17..640 3120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22541344..22541815 169..640 2360 100 Plus
X 23542271 X 22540938..22541068 39..169 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:51:58 has no hits.

BO13484.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:16 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RB 1..627 17..643 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:37 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RB 173..805 7..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:58 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1638..2261 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:16 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RB 173..805 7..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:55 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
CG17600-RA 1638..2261 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:55 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
X 22540940..22541068 41..169 100 -> Plus
X 22540854..22540877 17..40 100 -> Plus
X 22541345..22541815 170..642 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:58 Download gff for BO13484.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21942690..21942713 17..40 100 -> Plus
arm_X 21942776..21942904 41..169 100 -> Plus
arm_X 21943181..21943651 170..642 99   Plus

BO13484.pep Sequence

Translation from 16 to 658

> BO13484.pep
MSLNGSEKVNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGN
GMAPPPPTRLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYA
HPASLSGTYRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGA
PNFQYTGLDRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTK
IVCRDVVMASFLDH

BO13484.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17600-PC 208 CG17600-PC 1..208 1..208 1083 100 Plus
CG17600-PB 208 CG17600-PB 1..208 1..208 1083 100 Plus
CG17600-PA 600 CG17600-PA 393..600 1..208 1083 100 Plus
CG17600-PD 603 CG17600-PD 393..603 1..208 1069 98.6 Plus