Clone Sequence Records
BO13484.3prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-08
> BO13484.3prime
ATGGTCTAGAAAGCTTGCCATCACCACATCCCGGCAAACGATCTTCGTTT
TGAAGGATGCCCTCTGACCGCCGTACAAGTCCGAGGAGGCAGACGACGAA
TAGTCGACGTGACTGCCCGCCTGTGACTGTTCTTGCCTGGCCAAAAAGCT
ATCAGCTATGGCTCGATCTAGACCCGTATACTGGAAATTGGGAGCACCGT
CCAGGACATCCGCTTCCGATTTTCGGCGCTGCCGGCGATTGGCATCAGAC
TTTCCCGCCCGCCGCCGTCTTCGCTGCCCATTGATCTCCGCTGACTTTGT
GCTCTTGTGAGTCCGGTATGTCCCGCTTAGGCTAGCCGGGTGGGCGTAGG
TCACGGATCCGGGCCCAGGTCGCATGTAGGGAAGGGTCATTCCACGGTAC
TGCGCCGGCAGCGGGGGCACGGGAAGCAGAAGTCCAGCTCTGGCGCCCGG
AGGCGGAGGTGGCAAGCGTGTGGGCGGTGGTGGTGCCATCCCATTGCCAG
CGGTGGAGGGAATGAGCATGATCTGCCGCGATGGAGGCGTCAGTTTGCGG
ACTGTTGGCGGCAGGCTTCCCATCTGGGTGGCATACATCCACATAGCCGC
TAGCTTCTCGGTGTTCACCTTTTCACTGCCATTCAGAGACATGTCGACTG
ATAACT
BO13484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 1803 | CG17600-RA | 1177..1800 | 642..19 | 3120 | 100 | Minus |
CG17600-PB | 627 | CG17600-RB | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 973 | CG17600-RC | 141..764 | 642..19 | 3120 | 100 | Minus |
CG17600-RB | 1069 | CG17600-RB | 237..860 | 642..19 | 3120 | 100 | Minus |
CG17600-RA | 2470 | CG17600-RA | 1638..2261 | 642..19 | 3120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541815 | 490..19 | 2360 | 100 | Minus |
X | 23542271 | X | 22540938..22541068 | 620..490 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:20:10 has no hits.
BO13484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:37 Download gff for
BO13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PB | 1..627 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:51 Download gff for
BO13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PB | 1..627 | 16..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:58 Download gff for
BO13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2261 | 19..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:28 Download gff for
BO13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2261 | 19..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:28 Download gff for
BO13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540940..22541068 | 490..618 | 100 | -> | Minus |
X | 22541345..22541815 | 19..489 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:58 Download gff for
BO13484.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21942776..21942904 | 490..618 | 100 | -> | Minus |
arm_X | 21943181..21943651 | 19..489 | 100 | | Minus |
BO13484.5prime Sequence
656 bp (655 high quality bases) assembled on 2006-05-30
> BO13484.5prime
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGGCAAGCTTTC
TAGACC
BO13484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PA | 1803 | CG17600-RA | 1177..1800 | 17..640 | 3120 | 100 | Plus |
CG17600-PB | 627 | CG17600-RB | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 973 | CG17600-RC | 141..764 | 17..640 | 3120 | 100 | Plus |
CG17600-RB | 1069 | CG17600-RB | 237..860 | 17..640 | 3120 | 100 | Plus |
CG17600-RA | 2470 | CG17600-RA | 1638..2261 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541815 | 169..640 | 2360 | 100 | Plus |
X | 23542271 | X | 22540938..22541068 | 39..169 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:16:43 has no hits.
BO13484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:38 Download gff for
BO13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PB | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:52 Download gff for
BO13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-PB | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:29:05 Download gff for
BO13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2261 | 7..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:45 Download gff for
BO13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1629..2261 | 7..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:45 Download gff for
BO13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540940..22541068 | 41..169 | 100 | -> | Plus |
X | 22541345..22541815 | 170..640 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:29:05 Download gff for
BO13484.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21942776..21942904 | 41..169 | 100 | -> | Plus |
arm_X | 21943181..21943651 | 170..640 | 100 | | Plus |
BO13484.complete Sequence
658 bp assembled on 2006-10-11
GenBank Submission: FJ632792
> BO13484.complete
GAAGTTATCAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCG
AGAAGCTAGCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCG
CCAACAGTCCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCC
CTCCACCGCTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCAC
CTCCGCCTCCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTG
CCGGCGCAGTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGG
ATCCGTGACCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTC
ACAAGAGCACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGG
GCGGGAAAGTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGA
TGTCCTGGACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCA
TAGCTGATAGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCAC
GTCGACTATTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGC
ATCCTTCAAAACGAAGATCGTTTGCCGGGATGTGGTGATGGCAAGCTTTC
TAGACCAT
BO13484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 627 | CG17600-PC | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17600-RB | 627 | CG17600-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
CG17600-RA | 1803 | CG17600-PA | 1177..1800 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-RC | 973 | CG17600-RC | 141..764 | 17..640 | 3120 | 100 | Plus |
CG17600-RB | 1069 | CG17600-RB | 237..860 | 17..640 | 3120 | 100 | Plus |
CG17600-RA | 2470 | CG17600-RA | 1638..2261 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22541344..22541815 | 169..640 | 2360 | 100 | Plus |
X | 23542271 | X | 22540938..22541068 | 39..169 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:51:58 has no hits.
BO13484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:16 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RB | 1..627 | 17..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:37 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RB | 173..805 | 7..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:58 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1638..2261 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:16 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RB | 173..805 | 7..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:55 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17600-RA | 1638..2261 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:55 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22540940..22541068 | 41..169 | 100 | -> | Plus |
X | 22540854..22540877 | 17..40 | 100 | -> | Plus |
X | 22541345..22541815 | 170..642 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:58 Download gff for
BO13484.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21942690..21942713 | 17..40 | 100 | -> | Plus |
arm_X | 21942776..21942904 | 41..169 | 100 | -> | Plus |
arm_X | 21943181..21943651 | 170..642 | 99 | | Plus |
BO13484.pep Sequence
Translation from 16 to 658
> BO13484.pep
MSLNGSEKVNTEKLAAMWMYATQMGSLPPTVRKLTPPSRQIMLIPSTAGN
GMAPPPPTRLPPPPPGARAGLLLPVPPLPAQYRGMTLPYMRPGPGSVTYA
HPASLSGTYRTHKSTKSAEINGQRRRRRAGKSDANRRQRRKSEADVLDGA
PNFQYTGLDRAIADSFLARQEQSQAGSHVDYSSSASSDLYGGQRASFKTK
IVCRDVVMASFLDH
BO13484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17600-PC | 208 | CG17600-PC | 1..208 | 1..208 | 1083 | 100 | Plus |
CG17600-PB | 208 | CG17600-PB | 1..208 | 1..208 | 1083 | 100 | Plus |
CG17600-PA | 600 | CG17600-PA | 393..600 | 1..208 | 1083 | 100 | Plus |
CG17600-PD | 603 | CG17600-PD | 393..603 | 1..208 | 1069 | 98.6 | Plus |