Clone Sequence Records
BO13487.3prime Sequence
855 bp (783 high quality bases) assembled on 2006-05-08
> BO13487.3prime
ATGGTCTAGAAAGCTTGCAACTGTGCTCAGCACAACTGCTTCCTTGGGCA
ACAGCAGCACGGAGTTGGCAAAGGTGAGGTCGTTCTTGCGACGCACACTC
TTATCATTCACCACCACATATTGCAGTTGCGTGGTTATGGAGGTGAAGAC
AGAGTCCAAGTTGATCGATTCCACATCATCGTTGATGTTGATGAGGGTGA
TGTACGACTTGTAGCCCGCCAAAGATCGCTTGAAGGCCAGCACATTTGGA
CCAATGGCTGTTACGGAGACATCACCCTGCTTCAAAGTAGGCTCATCACG
CAGAGCCCGCAGCTGCTTGTAGACGTTCAGGTGGCTAAGGGCTATTCCAC
GCTCCTTCTTCACATTGACCAACTTGTAGTTGCTGGCCACAGGCAGCCAG
GTTACCGAGGCGTTGGAGAACCCGGCGTTGACCTCGTCGCTCCACTGGAA
TGGAGTGCGCACTGGGTCGCGAGTGAGGCGCTCAAACTCCTGTTCGTTCG
ATTGGCAGGCTTGAGGGTCCACGGTGTCCTCCCAGCTGATCCAAACGTCG
GTCATACCCATCTCCTCGCCCTGGTAGGTCACACTCACGCCGGGCAGGCC
CAGTATGATCATGTTGCAGGCGTCGATGCGATCGGCGCCCAATCGGGAGC
CAATGCGACTCTGGTCGTGGTTGCCGAACACCCAGTTAGCCACCTGACCT
TCTGGCATGTTGTCCAGCCAGTTGTGGATCAGCTCCGAGTAATGGTAGGC
ATCGGAGCTGTAGCTGATCTTGGCCAGCAGCTCGAAATTGAAGGGGATCT
GGGAGCCCAAGTGAGTGCCATTTCCATAGTACTGCATCAAAACTTCCAGA
GGAGA
BO13487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8695-PA | 1725 | LvpL-RA | 886..1722 | 855..19 | 4160 | 99.8 | Minus |
| CG8696-PA | 1734 | LvpH-RA | 1186..1232 | 567..521 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-RA | 1795 | CG8695-RA | 922..1758 | 855..19 | 4170 | 99.9 | Minus |
| Mal-A5-RC | 1988 | CG30359-RC | 1299..1378 | 597..518 | 205 | 83.8 | Minus |
| Mal-A5-RB | 2102 | CG30359-RB | 1356..1435 | 597..518 | 205 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8456281..8456909 | 227..855 | 3130 | 99.8 | Plus |
| 2R | 25286936 | 2R | 8456072..8456216 | 83..227 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 8455946..8456009 | 19..82 | 320 | 100 | Plus |
| 2R | 25286936 | 2R | 8450653..8450711 | 521..579 | 205 | 89.8 | Plus |
| 2R | 25286936 | 2R | 8464226..8464305 | 597..518 | 205 | 83.8 | Minus |
| 2R | 25286936 | 2R | 8473222..8473295 | 597..524 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:29:14 has no hits.
BO13487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:43 Download gff for
BO13487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpL-PA | 887..1725 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:50:58 Download gff for
BO13487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8695-PA | 887..1725 | 15..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:35 Download gff for
BO13487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 923..1764 | 12..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:14 Download gff for
BO13487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 923..1764 | 12..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:14 Download gff for
BO13487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8455940..8456009 | 12..82 | 95 | <- | Plus |
| 2R | 8456072..8456215 | 83..226 | 100 | <- | Plus |
| 2R | 8456281..8456908 | 227..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:35 Download gff for
BO13487.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4343445..4343514 | 12..82 | 95 | <- | Plus |
| arm_2R | 4343577..4343720 | 83..226 | 100 | <- | Plus |
| arm_2R | 4343786..4344413 | 227..854 | 99 | | Plus |
BO13487.5prime Sequence
938 bp (887 high quality bases) assembled on 2006-05-29
> BO13487.5prime
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCGATC
AACCCGAGACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAA
ATAGACGCCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTA
CTCTCCTCTGGAAGTTTTGATGCAGTACTATGGAAATG
BO13487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8695-PA | 1725 | LvpL-RA | 1..922 | 17..938 | 4610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-RA | 1795 | CG8695-RA | 36..958 | 16..938 | 4615 | 100 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 101..453 | 430 | 75.1 | Plus |
| Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 101..453 | 430 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8456873..8457649 | 938..162 | 3885 | 100 | Minus |
| 2R | 25286936 | 2R | 8457707..8457857 | 166..16 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 8463133..8463401 | 185..453 | 340 | 75.1 | Plus |
| 2R | 25286936 | 2R | 8459103..8459264 | 293..454 | 300 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:19:02 has no hits.
BO13487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:44 Download gff for
BO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpL-PA | 1..922 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:00 Download gff for
BO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8695-PA | 1..922 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:01:20 Download gff for
BO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 33..958 | 10..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:49:10 Download gff for
BO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 33..958 | 10..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:49:10 Download gff for
BO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8456873..8457646 | 165..938 | 100 | <- | Minus |
| 2R | 8457709..8457860 | 10..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:01:20 Download gff for
BO13487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4344378..4345151 | 165..938 | 100 | <- | Minus |
| arm_2R | 4345214..4345365 | 10..164 | 98 | | Minus |
BO13487.complete Sequence
1756 bp assembled on 2011-06-28
GenBank Submission: KX798829
> BO13487.complete
GAAGTTATCAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGG
CTTTGGCTCTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAG
TTCTACCAGATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGT
GGGAGATCTCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTG
GCATCACAGCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGAT
TTCGGCTACGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCAC
AATGGAGGATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCA
AAATCATTCTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGG
TTCATACGATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTG
GCACACCGGCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGG
TCTCCGTGTTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCG
TACTACCTCCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAA
CCCCAAGGTTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAA
AGGGGGCTTACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATT
CCAGCTGATGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGT
GAGCGATCCCGAGGACTACACTTACCTGCAGCACATCTACACCACCGATC
AACCCGAGACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAA
ATAGACGCCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTA
CTCTCCTCTGGAAGTTTTGATGCAGTACTATGGAAATGGCACTCACTTGG
GCTCCCAGATCCCCTTCAATTTCGAGCTGCTGGCCAAGATCAGCTACAGC
TCCGATGCCTACCATTACTCGGAGCTGATCCACAACTGGCTGGACAACAT
GCCAGAAGGTCAGGTGGCTAACTGGGTGTTCGGCAACCACGACCAGAGTC
GCATTGGCTCCCGATTGGGCGCCGATCGCATCGACGCCTGCAACATGATC
ATACTGGGCCTGCCCGGCGTGAGTGTGACCTACCAGGGCGAGGAGATGGG
TATGACCGACGTTTGGATCAGCTGGGAGGACACCGTGGACCCTCAAGCCT
GCCAATCGAACGAACAGGAGTTTGAGCGCCTCACTCGCGACCCAGTGCGC
ACTCCATTCCAGTGGAGCGACGAGGTCAACGCCGGGTTCTCCAACGCCTC
GGTAACCTGGCTGCCTGTGGCCAGCAACTACAAGTTGGTCAATGTGAAGA
AGGAGCGTGGAATAGCCCTTAGCCACCTGAACGTCTACAAGCAGCTGCGG
GCTCTGCGTGATGAGCCTACTTTGAAGCAGGGTGATGTCTCCGTAACAGC
CATTGGTCCAAATGTGCTGGCCTTCAAGCGATCTTTGGCGGGCTACAAGT
CGTACATCACCCTCATCAACATCAACGATGATGTGGAATCGATCAACTTG
GACTCTGTCTTCACCTCCATAACCACGCAACTGCAATATGTGGTGGTGAA
TGATAAGAGTGTGCGTCGCAAGAACGACCTCACCTTTGCCAACTCCGTGC
TGCTGTTGCCCAAGGAAGCAGTTGTGCTGAGCACAGTTGCAAGCTTTCTA
GACCAT
BO13487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-RA | 1725 | CG8695-PA | 1..1722 | 17..1738 | 8595 | 99.9 | Plus |
| Mal-A5-RC | 1836 | CG30359-PC | 148..500 | 101..453 | 430 | 74.8 | Plus |
| Mal-A5-RA | 1893 | CG30359-PA | 148..500 | 101..453 | 430 | 74.8 | Plus |
| Mal-A5-RC | 1836 | CG30359-PC | 1207..1286 | 1160..1239 | 205 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-RA | 1795 | CG8695-RA | 36..1758 | 16..1738 | 8600 | 99.9 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 101..453 | 430 | 74.8 | Plus |
| Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 101..453 | 430 | 74.8 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 1299..1378 | 1160..1239 | 205 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8456281..8457649 | 1530..162 | 6830 | 99.9 | Minus |
| 2R | 25286936 | 2R | 8457707..8457857 | 166..16 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 8456072..8456216 | 1674..1530 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 8463133..8463401 | 185..453 | 340 | 75.1 | Plus |
| 2R | 25286936 | 2R | 8455946..8456009 | 1738..1675 | 320 | 100 | Minus |
| 2R | 25286936 | 2R | 8453829..8454035 | 185..391 | 315 | 76.8 | Plus |
| 2R | 25286936 | 2R | 8459103..8459264 | 293..454 | 300 | 79 | Plus |
| 2R | 25286936 | 2R | 8450653..8450711 | 1236..1178 | 205 | 89.8 | Minus |
| 2R | 25286936 | 2R | 8464226..8464305 | 1160..1239 | 205 | 83.8 | Plus |
| 2R | 25286936 | 2R | 8473222..8473295 | 1160..1233 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:14:35 has no hits.
BO13487.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:23 Download gff for
BO13487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpL-RA | 35..1751 | 22..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:49 Download gff for
BO13487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 42..1758 | 22..1740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:25 Download gff for
BO13487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 42..1758 | 22..1740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:25 Download gff for
BO13487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8456072..8456215 | 1531..1674 | 100 | <- | Minus |
| 2R | 8455944..8456009 | 1675..1740 | 96 | <- | Minus |
| 2R | 8456281..8457646 | 165..1530 | 99 | <- | Minus |
| 2R | 8457709..8457851 | 22..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:49 Download gff for
BO13487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4343577..4343720 | 1531..1674 | 100 | <- | Minus |
| arm_2R | 4343449..4343514 | 1675..1740 | 96 | <- | Minus |
| arm_2R | 4343786..4345151 | 165..1530 | 99 | <- | Minus |
| arm_2R | 4345214..4345356 | 22..164 | 100 | | Minus |
BO13487.pep Sequence
Translation from 16 to 1756
> BO13487.pep
MFKLLVLSCLLALALPSLAEVGWWKTGQFYQIYPRSFKDSDGDGVGDLIG
ITQQLPYLKEIGITATWLSPIFTSPMADFGYDVADLKGIDPIFGTMEDFE
ALLARAKELDIKIILDFVPNHTSDECDWFIRSAAGEEEYKDFYVWHTGKV
VNGIRQPPTNWVSVFRGSMWTWNEQRQAYYLHQFHAKQPDLNYRNPKVVE
AMKDVLRFWLRKGAYGFRIDAVPHVYEIPADADGNWPDEPRNEAVSDPED
YTYLQHIYTTDQPETLELVYAFRDVIEEIDAELGGDDRVLLTEAYSPLEV
LMQYYGNGTHLGSQIPFNFELLAKISYSSDAYHYSELIHNWLDNMPEGQV
ANWVFGNHDQSRIGSRLGADRIDACNMIILGLPGVSVTYQGEEMGMTDVW
ISWEDTVDPQACQSNEQEFERLTRDPVRTPFQWSDEVNAGFSNASVTWLP
VASNYKLVNVKKERGIALSHLNVYKQLRALRDEPTLKQGDVSVTAIGPNV
LAFKRSLAGYKSYITLININDDVESINLDSVFTSITTQLQYVVVNDKSVR
RKNDLTFANSVLLLPKEAVVLSTVASFLDH
BO13487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-PA | 574 | CG8695-PA | 1..574 | 1..574 | 3048 | 100 | Plus |
| Mal-A4-PA | 579 | CG8693-PA | 7..578 | 7..576 | 1924 | 59.6 | Plus |
| Mal-A5-PA | 630 | CG30359-PA | 40..602 | 19..580 | 1881 | 61.5 | Plus |
| Mal-A5-PC | 611 | CG30359-PC | 40..583 | 19..580 | 1794 | 59.3 | Plus |
| Mal-A5-PB | 534 | CG30359-PB | 1..506 | 76..580 | 1620 | 59.3 | Plus |
