Clone Sequence Records
BO13493.3prime Sequence
782 bp (710 high quality bases) assembled on 2006-05-08
> BO13493.3prime
ATGGTCTAGAAAGCTTGCCCAGCTGCCACCGCCCTGGGAAGCCCAACCTC
CGCTGGATGAGCCACCTGCGGACCAACCGCCGTTGGAAGCTCCGCCGGAG
GACCAGCCACCACTGGAAGGGGCACCGTAGGAACCACTGGGAGGACCGTA
CGAGGAACTGGGAGGACCGTACGAGGAACTGGGTGCAGCGTAGGATGAAC
CACCAGACGACCAACCACCGGAGTCTCCAGCTCCAGAATTCGATTCCGAG
ATGATTTTGATGATCTTCACAGCTTCAGCACCACCTCCACCTCCAGAGGA
CCAGCCACCGCTGGAAGCACCACCCGATGACCAACCGCCACCAGATGCAC
CACCATATCCTCCAGACGAACCTCCATAGCCGCCACCACCGTGGCCGCCA
GACGAAGCCTGCTGCGAGATGATCTTGATGATTTTGATTTCCTGGCCGCC
GCCACCGCCGCCATGTCCGCCACCACCGCCAGCCGTCCAGCCGCTGCCGC
CGCCTCCTCCGGATTGCCAGCCTCCAGAGCCACCAGCTGGAGCAGTTTCG
TGGATCACTTTGATGACTTTGACAGGCGGGGAACCGCCACCACCGCCATG
GTGATCTGAGCCACCGCCACCGCCGCCGCCGTAGCTGTAGCCACCATCTC
CGCCGCCGCCGTGGGAGGATCCACCACCACCGTAGCCACCACCACCACCA
CCTCCTCCTCCAATGAATCCTGCTTGAGCCACCGCGGCCAGAACCAGCAA
AGAGATGAATACTTTCATGTCGACTGATAACT
BO13493.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-PA | 753 | CG12523-RA | 1..750 | 768..19 | 3725 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-RB | 1161 | CG12523-RB | 35..790 | 774..19 | 3750 | 99.7 | Minus |
CG12523-RA | 912 | CG12523-RA | 35..790 | 774..19 | 3750 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10801224..10801979 | 774..19 | 3750 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:25:07 has no hits.
BO13493.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:53 Download gff for
BO13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:12 Download gff for
BO13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:38 Download gff for
BO13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 30..795 | 11..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:40 Download gff for
BO13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 30..795 | 11..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:40 Download gff for
BO13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10801219..10801984 | 11..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:38 Download gff for
BO13493.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10794319..10795084 | 11..778 | 99 | | Minus |
BO13493.5prime Sequence
782 bp (755 high quality bases) assembled on 2006-05-30
> BO13493.5prime
GAAGTTATCAGTCGACATGAAAGTATTCATCTCTTTGCTGGCTCTGGCCG
CGGTGGCTCAAGCAGGATTCATTGGAGGAGGAGGTGGTGGTGGTGGTGGC
TACGGTGGTGGTGGATCCTCCCACGGCGGCGGCGGAGATGGTGGCTACAG
CTACGGCGGCGGCGGTGGCGGTGGCTCAGATCACCATGGCGGTGGTGGCG
GTTCCCCGCCTGTCAAAGTCATCAAAGTGATCCACGAAACTGCTCCAGCT
GGTGGCTCTGGAGGCTGGCAATCCGGAGGAGGCGGCGGCAGCGGCTGGAC
GGCTGGCGGTGGTGGCGGACATGGCGGCGGTGGCGGCGGCCAGGAAATCA
AAATCATCAAGATCATCTCGCAGCAGGCTTCGTCTGGCGGCCACGGTGGT
GGCGGCTATGGAGGTTCGTCTGGAGGATATGGTGGTGCATCTGGTGGCGG
TTGGTCATCGGGTGGTGCTTCCAGCGGTGGCTGGTCCTCTGGAGGTGGAG
GTGGTGCTGAAGCTGTGAAGATCATCAAAATCATCTCGGAATCGAATTCT
GGAGCTGGAGACTCCGGTGGTTGGTCGTCTGGTGGTTCATCCTACGCTGC
ACCCAGTTCCTCGTACGGTCCTCCCAGTTCCTCGTACGGTCCTCCCAGTG
GTTCCTACGGTGCCCCTTCCAGTGGTGGCTGGTCCTCCGGCGGAGCTTCC
AACGGCGGTTGGTCCGCAGGTGGCTCATCCAGCGGAGGTTGGGCTTCCCA
GGGCGGTGGCAGCTGGGCAAGCTTTCTAGACC
BO13493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-PA | 753 | CG12523-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-RB | 1161 | CG12523-RB | 35..790 | 11..766 | 3765 | 99.9 | Plus |
CG12523-RA | 912 | CG12523-RA | 35..790 | 11..766 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10801224..10801979 | 11..766 | 3765 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:12:35 has no hits.
BO13493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:54 Download gff for
BO13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:13 Download gff for
BO13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:56 Download gff for
BO13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 30..795 | 7..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:39 Download gff for
BO13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 30..795 | 7..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:39 Download gff for
BO13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10801219..10801984 | 7..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:56 Download gff for
BO13493.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10794319..10795084 | 7..774 | 99 | | Plus |
BO13493.complete Sequence
784 bp assembled on 2006-10-11
GenBank Submission: FJ632793
> BO13493.complete
GAAGTTATCAGTCGACATGAAAGTATTCATCTCTTTGCTGGCTCTGGCCG
CGGTGGCTCAAGCAGGATTCATTGGAGGAGGAGGTGGTGGTGGTGGTGGC
TACGGTGGTGGTGGATCCTCCCACGGCGGCGGCGGAGATGGTGGCTACAG
CTACGGCGGCGGCGGTGGCGGTGGCTCAGATCACCATGGCGGTGGTGGCG
GTTCCCCGCCTGTCAAAGTCATCAAAGTGATCCACGAAACTGCTCCAGCT
GGTGGCTCTGGAGGCTGGCAATCCGGAGGAGGCGGCGGCAGCGGCTGGAC
GGCTGGCGGTGGTGGCGGACATGGCGGCGGTGGCGGCGGCCAGGAAATCA
AAATCATCAAGATCATCTCGCAGCAGGCTTCGTCTGGCGGCCACGGTGGT
GGCGGCTATGGAGGTTCGTCTGGAGGATATGGTGGTGCATCTGGTGGCGG
TTGGTCATCGGGTGGTGCTTCCAGCGGTGGCTGGTCCTCTGGAGGTGGAG
GTGGTGCTGAAGCTGTGAAGATCATCAAAATCATCTCGGAATCGAATTCT
GGAGCTGGAGACTCCGGTGGTTGGTCGTCTGGTGGTTCATCCTACGCTGC
ACCCAGTTCCTCGTACGGTCCTCCCAGTTCCTCGTACGGTCCTCCCAGTG
GTTCCTACGGTGCCCCTTCCAGTGGTGGCTGGTCCTCCGGCGGAGCTTCC
AACGGCGGTTGGTCCGCAGGTGGCTCATCCAGCGGAGGTTGGGCTTCCCA
GGGCGGTGGCAGCTGGGCAAGCTTTCTAGACCAT
BO13493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-RB | 753 | CG12523-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG12523-RA | 753 | CG12523-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-RB | 1161 | CG12523-RB | 35..790 | 11..766 | 3765 | 99.9 | Plus |
CG12523-RA | 912 | CG12523-RA | 35..790 | 11..766 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10801224..10801979 | 11..766 | 3765 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:36 has no hits.
BO13493.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:18 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:39 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 28..793 | 7..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:33 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 41..790 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:18 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 28..793 | 7..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:21 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12523-RA | 41..790 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:21 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10801230..10801979 | 17..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:33 Download gff for
BO13493.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10794330..10795079 | 17..768 | 99 | | Plus |
BO13493.pep Sequence
Translation from 16 to 784
> BO13493.pep
MKVFISLLALAAVAQAGFIGGGGGGGGGYGGGGSSHGGGGDGGYSYGGGG
GGGSDHHGGGGGSPPVKVIKVIHETAPAGGSGGWQSGGGGGSGWTAGGGG
GHGGGGGGQEIKIIKIISQQASSGGHGGGGYGGSSGGYGGASGGGWSSGG
ASSGGWSSGGGGGAEAVKIIKIISESNSGAGDSGGWSSGGSSYAAPSSSY
GPPSSSYGPPSGSYGAPSSGGWSSGGASNGGWSAGGSSSGGWASQGGGSW
ASFLDH
BO13493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12523-PB | 250 | CG12523-PB | 1..250 | 1..250 | 1375 | 100 | Plus |
CG12523-PA | 250 | CG12523-PA | 1..250 | 1..250 | 1375 | 100 | Plus |
CG14191-PA | 193 | CG14191-PA | 1..193 | 1..253 | 431 | 43.9 | Plus |
CG13376-PB | 200 | CG13376-PB | 1..199 | 1..200 | 425 | 44.9 | Plus |
CG13376-PD | 204 | CG13376-PD | 9..203 | 3..200 | 425 | 46.4 | Plus |
CG13376-PB | 200 | CG13376-PB | 55..200 | 10..157 | 390 | 54.4 | Plus |
CG13376-PB | 200 | CG13376-PB | 22..200 | 79..251 | 387 | 49.7 | Plus |
CG13376-PB | 200 | CG13376-PB | 22..157 | 89..252 | 239 | 40.7 | Plus |