Clone BO13493 Report

Search the DGRC for BO13493

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG12523-RA
Protein status:BO13493.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO13493.3prime Sequence

782 bp (710 high quality bases) assembled on 2006-05-08

> BO13493.3prime
ATGGTCTAGAAAGCTTGCCCAGCTGCCACCGCCCTGGGAAGCCCAACCTC
CGCTGGATGAGCCACCTGCGGACCAACCGCCGTTGGAAGCTCCGCCGGAG
GACCAGCCACCACTGGAAGGGGCACCGTAGGAACCACTGGGAGGACCGTA
CGAGGAACTGGGAGGACCGTACGAGGAACTGGGTGCAGCGTAGGATGAAC
CACCAGACGACCAACCACCGGAGTCTCCAGCTCCAGAATTCGATTCCGAG
ATGATTTTGATGATCTTCACAGCTTCAGCACCACCTCCACCTCCAGAGGA
CCAGCCACCGCTGGAAGCACCACCCGATGACCAACCGCCACCAGATGCAC
CACCATATCCTCCAGACGAACCTCCATAGCCGCCACCACCGTGGCCGCCA
GACGAAGCCTGCTGCGAGATGATCTTGATGATTTTGATTTCCTGGCCGCC
GCCACCGCCGCCATGTCCGCCACCACCGCCAGCCGTCCAGCCGCTGCCGC
CGCCTCCTCCGGATTGCCAGCCTCCAGAGCCACCAGCTGGAGCAGTTTCG
TGGATCACTTTGATGACTTTGACAGGCGGGGAACCGCCACCACCGCCATG
GTGATCTGAGCCACCGCCACCGCCGCCGCCGTAGCTGTAGCCACCATCTC
CGCCGCCGCCGTGGGAGGATCCACCACCACCGTAGCCACCACCACCACCA
CCTCCTCCTCCAATGAATCCTGCTTGAGCCACCGCGGCCAGAACCAGCAA
AGAGATGAATACTTTCATGTCGACTGATAACT

BO13493.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-PA 753 CG12523-RA 1..750 768..19 3725 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-RB 1161 CG12523-RB 35..790 774..19 3750 99.7 Minus
CG12523-RA 912 CG12523-RA 35..790 774..19 3750 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10801224..10801979 774..19 3750 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 04:25:07 has no hits.

BO13493.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:53 Download gff for BO13493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:12 Download gff for BO13493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-PA 1..753 15..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:38 Download gff for BO13493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 30..795 11..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:40 Download gff for BO13493.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 30..795 11..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:40 Download gff for BO13493.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10801219..10801984 11..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:38 Download gff for BO13493.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10794319..10795084 11..778 99   Minus

BO13493.5prime Sequence

782 bp (755 high quality bases) assembled on 2006-05-30

> BO13493.5prime
GAAGTTATCAGTCGACATGAAAGTATTCATCTCTTTGCTGGCTCTGGCCG
CGGTGGCTCAAGCAGGATTCATTGGAGGAGGAGGTGGTGGTGGTGGTGGC
TACGGTGGTGGTGGATCCTCCCACGGCGGCGGCGGAGATGGTGGCTACAG
CTACGGCGGCGGCGGTGGCGGTGGCTCAGATCACCATGGCGGTGGTGGCG
GTTCCCCGCCTGTCAAAGTCATCAAAGTGATCCACGAAACTGCTCCAGCT
GGTGGCTCTGGAGGCTGGCAATCCGGAGGAGGCGGCGGCAGCGGCTGGAC
GGCTGGCGGTGGTGGCGGACATGGCGGCGGTGGCGGCGGCCAGGAAATCA
AAATCATCAAGATCATCTCGCAGCAGGCTTCGTCTGGCGGCCACGGTGGT
GGCGGCTATGGAGGTTCGTCTGGAGGATATGGTGGTGCATCTGGTGGCGG
TTGGTCATCGGGTGGTGCTTCCAGCGGTGGCTGGTCCTCTGGAGGTGGAG
GTGGTGCTGAAGCTGTGAAGATCATCAAAATCATCTCGGAATCGAATTCT
GGAGCTGGAGACTCCGGTGGTTGGTCGTCTGGTGGTTCATCCTACGCTGC
ACCCAGTTCCTCGTACGGTCCTCCCAGTTCCTCGTACGGTCCTCCCAGTG
GTTCCTACGGTGCCCCTTCCAGTGGTGGCTGGTCCTCCGGCGGAGCTTCC
AACGGCGGTTGGTCCGCAGGTGGCTCATCCAGCGGAGGTTGGGCTTCCCA
GGGCGGTGGCAGCTGGGCAAGCTTTCTAGACC

BO13493.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-PA 753 CG12523-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-RB 1161 CG12523-RB 35..790 11..766 3765 99.9 Plus
CG12523-RA 912 CG12523-RA 35..790 11..766 3765 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10801224..10801979 11..766 3765 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 05:12:35 has no hits.

BO13493.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:54 Download gff for BO13493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:13 Download gff for BO13493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:56 Download gff for BO13493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 30..795 7..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:39 Download gff for BO13493.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 30..795 7..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:39 Download gff for BO13493.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10801219..10801984 7..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:56 Download gff for BO13493.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10794319..10795084 7..774 99   Plus

BO13493.complete Sequence

784 bp assembled on 2006-10-11

GenBank Submission: FJ632793

> BO13493.complete
GAAGTTATCAGTCGACATGAAAGTATTCATCTCTTTGCTGGCTCTGGCCG
CGGTGGCTCAAGCAGGATTCATTGGAGGAGGAGGTGGTGGTGGTGGTGGC
TACGGTGGTGGTGGATCCTCCCACGGCGGCGGCGGAGATGGTGGCTACAG
CTACGGCGGCGGCGGTGGCGGTGGCTCAGATCACCATGGCGGTGGTGGCG
GTTCCCCGCCTGTCAAAGTCATCAAAGTGATCCACGAAACTGCTCCAGCT
GGTGGCTCTGGAGGCTGGCAATCCGGAGGAGGCGGCGGCAGCGGCTGGAC
GGCTGGCGGTGGTGGCGGACATGGCGGCGGTGGCGGCGGCCAGGAAATCA
AAATCATCAAGATCATCTCGCAGCAGGCTTCGTCTGGCGGCCACGGTGGT
GGCGGCTATGGAGGTTCGTCTGGAGGATATGGTGGTGCATCTGGTGGCGG
TTGGTCATCGGGTGGTGCTTCCAGCGGTGGCTGGTCCTCTGGAGGTGGAG
GTGGTGCTGAAGCTGTGAAGATCATCAAAATCATCTCGGAATCGAATTCT
GGAGCTGGAGACTCCGGTGGTTGGTCGTCTGGTGGTTCATCCTACGCTGC
ACCCAGTTCCTCGTACGGTCCTCCCAGTTCCTCGTACGGTCCTCCCAGTG
GTTCCTACGGTGCCCCTTCCAGTGGTGGCTGGTCCTCCGGCGGAGCTTCC
AACGGCGGTTGGTCCGCAGGTGGCTCATCCAGCGGAGGTTGGGCTTCCCA
GGGCGGTGGCAGCTGGGCAAGCTTTCTAGACCAT

BO13493.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-RB 753 CG12523-PB 1..750 17..766 3750 100 Plus
CG12523-RA 753 CG12523-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-RB 1161 CG12523-RB 35..790 11..766 3765 99.9 Plus
CG12523-RA 912 CG12523-RA 35..790 11..766 3765 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10801224..10801979 11..766 3765 99.9 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:36 has no hits.

BO13493.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:18 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:39 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 28..793 7..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:33 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 41..790 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:18 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 28..793 7..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:21 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
CG12523-RA 41..790 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:21 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10801230..10801979 17..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:33 Download gff for BO13493.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10794330..10795079 17..768 99   Plus

BO13493.pep Sequence

Translation from 16 to 784

> BO13493.pep
MKVFISLLALAAVAQAGFIGGGGGGGGGYGGGGSSHGGGGDGGYSYGGGG
GGGSDHHGGGGGSPPVKVIKVIHETAPAGGSGGWQSGGGGGSGWTAGGGG
GHGGGGGGQEIKIIKIISQQASSGGHGGGGYGGSSGGYGGASGGGWSSGG
ASSGGWSSGGGGGAEAVKIIKIISESNSGAGDSGGWSSGGSSYAAPSSSY
GPPSSSYGPPSGSYGAPSSGGWSSGGASNGGWSAGGSSSGGWASQGGGSW
ASFLDH

BO13493.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12523-PB 250 CG12523-PB 1..250 1..250 1375 100 Plus
CG12523-PA 250 CG12523-PA 1..250 1..250 1375 100 Plus
CG14191-PA 193 CG14191-PA 1..193 1..253 431 43.9 Plus
CG13376-PB 200 CG13376-PB 1..199 1..200 425 44.9 Plus
CG13376-PD 204 CG13376-PD 9..203 3..200 425 46.4 Plus
CG13376-PB 200 CG13376-PB 55..200 10..157 390 54.4 Plus
CG13376-PB 200 CG13376-PB 22..200 79..251 387 49.7 Plus
CG13376-PB 200 CG13376-PB 22..157 89..252 239 40.7 Plus