Clone BO13496 Report

Search the DGRC for BO13496

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:134
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG13077-RA
Protein status:BO13496.pep: Imported from assembly
Sequenced Size:841

Clone Sequence Records

BO13496.3prime Sequence

839 bp (711 high quality bases) assembled on 2006-05-08

> BO13496.3prime
ATGGTCTAGAAAGCTTGCAAACTGTTGCGATATATTTTTGCATTTCTGAT
AGAGTGCCTTCATCGGTCCGTAGCTCGACAGGACCAACGATATGAGGGTG
AGGCACTTCATCAGGATTTGGAAATCCGTCTCACTTCGGCTCTTAAAGTA
GCCCGTCTGGTAGCCATAGTACTGGGTCACCAGTGCGATCACAAAGCACG
CGAATCCCAGGAAGTTGTGGAACGTCTTGTTCAGCAATGGTGTGATTAGC
TTCTTGATGCGGCTGGAGAAAAGTGCAGCCAGTCCCGAGGACATGGCCAG
AATGCACAGTACGAAGGCGGTCATCCCCAGCCTCCCATGTGTCGATTGCA
GCAAAAACCCCTTTTGAATCATCTTGATAAGAGCACCAGCTGCCCCGCAA
CCGCCTCCCAAAGTCAGGAGCACCCAGTGAATGGTGGTCTTCGTCTGACG
CTTGTATCCATTTGTCAGCACATTGCCGCCGTAGTGGATCATGACGCCCT
CGGCCATGAAGAAGGAGAACCCGATGGTCACTAGCCAGGCATGCAGACCC
GTGCCCGAGAGCCCCGTTCGCAGCGTGAGATAGGAAATATAGATGGTGAT
AAATCCAATGCACATCTGGTTGAGAACGTTAAGGAAGTACTCCAGTCTCT
GGAGGCGATTCTCGGCCTCGTGGCCGGACAGGGAACCGTGGGCCATTTTC
GAATAGCGACGCGGGGATTCGATCGGAATAAATGTGGGTCGGCGTGGCGT
ATCCGTCCGGAGCGTGCTGCCGTAGTCGGCGGATGTCTGAGTTCTACTAA
CCACTGGCTGCTTACTCTCGGACATGTCGACTGATAACT

BO13496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 810 CG13077-RA 1..807 825..19 3985 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 1146 CG13077-RA 274..1080 825..19 4005 99.8 Minus
CG13077-RB 849 CG13077-RB 2..783 800..19 3895 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19566985..19567293 327..19 1545 100 Minus
2L 23513712 2L 19566136..19566441 825..520 1515 99.7 Minus
2L 23513712 2L 19566507..19566701 520..326 960 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 16:37:42 has no hits.

BO13496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:59 Download gff for BO13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:20 Download gff for BO13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:39 Download gff for BO13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 276..1080 19..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:52 Download gff for BO13496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 276..1080 19..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:52 Download gff for BO13496.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19566138..19566441 520..823 99 -> Minus
2L 19566508..19566700 327..519 99 -> Minus
2L 19566986..19567293 19..326 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:39 Download gff for BO13496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19566138..19566441 520..823 99 -> Minus
arm_2L 19566508..19566700 327..519 99 -> Minus
arm_2L 19566986..19567293 19..326 100   Minus

BO13496.5prime Sequence

839 bp (779 high quality bases) assembled on 2006-05-29

> BO13496.5prime
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAG
AGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCAT
ATCGTTGGTCCTGTCGAGCTACGGACCGATGAAAGCACTCTATCAGAAAT
GCAAAAATATATCGCAACAGTTTGCAAGCTTTCTAGACC

BO13496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 810 CG13077-RA 1..807 17..823 3985 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 1146 CG13077-RA 274..1080 17..823 4005 99.8 Plus
CG13077-RB 849 CG13077-RB 1..783 41..823 3885 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19566136..19566441 17..322 1530 100 Plus
2L 23513712 2L 19566985..19567293 515..823 1530 99.7 Plus
2L 23513712 2L 19566507..19566701 322..516 960 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 05:45:10 has no hits.

BO13496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:00 Download gff for BO13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:21 Download gff for BO13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:59 Download gff for BO13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 276..1080 19..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:42 Download gff for BO13496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 276..1080 19..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:42 Download gff for BO13496.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19566138..19566441 19..322 100 -> Plus
2L 19566508..19566700 323..515 99 -> Plus
2L 19566986..19567293 516..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:59 Download gff for BO13496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19566138..19566441 19..322 100 -> Plus
arm_2L 19566508..19566700 323..515 99 -> Plus
arm_2L 19566986..19567293 516..823 99   Plus

BO13496.complete Sequence

841 bp assembled on 2008-08-15

GenBank Submission: FJ632794

> BO13496.complete
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAG
AGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCAT
ATCGTTGGTCCTGTCGAGCTACGGACCGATGAAGGCACTCTATCAGAAAT
GCAAAAATATATCGCAACAGTTTGCAAGCTTTCTAGACCAT

BO13496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 810 CG13077-PA 1..807 17..823 4020 99.9 Plus
CG13077-RB 681 CG13077-PB 1..678 146..823 3375 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-RA 1146 CG13077-RA 274..1080 17..823 4020 99.9 Plus
CG13077-RB 849 CG13077-RB 1..783 41..823 3900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19566985..19567293 515..823 1545 100 Plus
2L 23513712 2L 19566136..19566441 17..322 1530 100 Plus
2L 23513712 2L 19566507..19566701 322..516 960 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:32 has no hits.

BO13496.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:11 Download gff for BO13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 277..1081 19..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:10:59 Download gff for BO13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 274..1080 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:17 Download gff for BO13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 275..1081 17..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:11 Download gff for BO13496.complete
Subject Subject Range Query Range Percent Splice Strand
CG13077-RA 274..1080 17..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:11 Download gff for BO13496.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19566136..19566441 17..322 100 -> Plus
2L 19566508..19566700 323..515 99 -> Plus
2L 19566986..19567293 516..825 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:10:59 Download gff for BO13496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19566136..19566441 17..322 100 -> Plus
arm_2L 19566508..19566700 323..515 99 -> Plus
arm_2L 19566986..19567293 516..825 99   Plus

BO13496.pep Sequence

Translation from 16 to 841

> BO13496.pep
MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS
GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT
IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI
KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK
TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS
SYGPMKALYQKCKNISQQFASFLDH

BO13496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13077-PA 269 CG13077-PA 1..269 1..269 1393 100 Plus
CG13077-PB 226 CG13077-PB 1..226 44..269 1173 100 Plus
CG13078-PA 222 CG13078-PA 12..221 58..266 521 50.2 Plus
CG10165-PD 228 CG10165-PD 13..224 60..270 207 25.9 Plus
CG10165-PC 228 CG10165-PC 13..224 60..270 207 25.9 Plus