Clone Sequence Records
BO13496.3prime Sequence
839 bp (711 high quality bases) assembled on 2006-05-08
> BO13496.3prime
ATGGTCTAGAAAGCTTGCAAACTGTTGCGATATATTTTTGCATTTCTGAT
AGAGTGCCTTCATCGGTCCGTAGCTCGACAGGACCAACGATATGAGGGTG
AGGCACTTCATCAGGATTTGGAAATCCGTCTCACTTCGGCTCTTAAAGTA
GCCCGTCTGGTAGCCATAGTACTGGGTCACCAGTGCGATCACAAAGCACG
CGAATCCCAGGAAGTTGTGGAACGTCTTGTTCAGCAATGGTGTGATTAGC
TTCTTGATGCGGCTGGAGAAAAGTGCAGCCAGTCCCGAGGACATGGCCAG
AATGCACAGTACGAAGGCGGTCATCCCCAGCCTCCCATGTGTCGATTGCA
GCAAAAACCCCTTTTGAATCATCTTGATAAGAGCACCAGCTGCCCCGCAA
CCGCCTCCCAAAGTCAGGAGCACCCAGTGAATGGTGGTCTTCGTCTGACG
CTTGTATCCATTTGTCAGCACATTGCCGCCGTAGTGGATCATGACGCCCT
CGGCCATGAAGAAGGAGAACCCGATGGTCACTAGCCAGGCATGCAGACCC
GTGCCCGAGAGCCCCGTTCGCAGCGTGAGATAGGAAATATAGATGGTGAT
AAATCCAATGCACATCTGGTTGAGAACGTTAAGGAAGTACTCCAGTCTCT
GGAGGCGATTCTCGGCCTCGTGGCCGGACAGGGAACCGTGGGCCATTTTC
GAATAGCGACGCGGGGATTCGATCGGAATAAATGTGGGTCGGCGTGGCGT
ATCCGTCCGGAGCGTGCTGCCGTAGTCGGCGGATGTCTGAGTTCTACTAA
CCACTGGCTGCTTACTCTCGGACATGTCGACTGATAACT
BO13496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-PA | 810 | CG13077-RA | 1..807 | 825..19 | 3985 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 1146 | CG13077-RA | 274..1080 | 825..19 | 4005 | 99.8 | Minus |
CG13077-RB | 849 | CG13077-RB | 2..783 | 800..19 | 3895 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19566985..19567293 | 327..19 | 1545 | 100 | Minus |
2L | 23513712 | 2L | 19566136..19566441 | 825..520 | 1515 | 99.7 | Minus |
2L | 23513712 | 2L | 19566507..19566701 | 520..326 | 960 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:37:42 has no hits.
BO13496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:04:59 Download gff for
BO13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:20 Download gff for
BO13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:39 Download gff for
BO13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 276..1080 | 19..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:52 Download gff for
BO13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 276..1080 | 19..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:48:52 Download gff for
BO13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19566138..19566441 | 520..823 | 99 | -> | Minus |
2L | 19566508..19566700 | 327..519 | 99 | -> | Minus |
2L | 19566986..19567293 | 19..326 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:39 Download gff for
BO13496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19566138..19566441 | 520..823 | 99 | -> | Minus |
arm_2L | 19566508..19566700 | 327..519 | 99 | -> | Minus |
arm_2L | 19566986..19567293 | 19..326 | 100 | | Minus |
BO13496.5prime Sequence
839 bp (779 high quality bases) assembled on 2006-05-29
> BO13496.5prime
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAG
AGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCAT
ATCGTTGGTCCTGTCGAGCTACGGACCGATGAAAGCACTCTATCAGAAAT
GCAAAAATATATCGCAACAGTTTGCAAGCTTTCTAGACC
BO13496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-PA | 810 | CG13077-RA | 1..807 | 17..823 | 3985 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 1146 | CG13077-RA | 274..1080 | 17..823 | 4005 | 99.8 | Plus |
CG13077-RB | 849 | CG13077-RB | 1..783 | 41..823 | 3885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19566136..19566441 | 17..322 | 1530 | 100 | Plus |
2L | 23513712 | 2L | 19566985..19567293 | 515..823 | 1530 | 99.7 | Plus |
2L | 23513712 | 2L | 19566507..19566701 | 322..516 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:45:10 has no hits.
BO13496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:00 Download gff for
BO13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:21 Download gff for
BO13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:59 Download gff for
BO13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 276..1080 | 19..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:42 Download gff for
BO13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 276..1080 | 19..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:42 Download gff for
BO13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19566138..19566441 | 19..322 | 100 | -> | Plus |
2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
2L | 19566986..19567293 | 516..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:59 Download gff for
BO13496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19566138..19566441 | 19..322 | 100 | -> | Plus |
arm_2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
arm_2L | 19566986..19567293 | 516..823 | 99 | | Plus |
BO13496.complete Sequence
841 bp assembled on 2008-08-15
GenBank Submission: FJ632794
> BO13496.complete
GAAGTTATCAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAA
CTCAGACATCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGC
CGACCCACATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGC
CCACGGTTCCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGG
AGTACTTCCTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATC
TATATTTCCTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCA
TGCCTGGCTAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCA
TGATCCACTACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACG
AAGACCACCATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGC
AGCTGGTGCTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGA
CACATGGGAGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATG
TCCTCGGGACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCAC
ACCATTGCTGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTG
TGATCGCACTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAG
AGCCGAAGTGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCAT
ATCGTTGGTCCTGTCGAGCTACGGACCGATGAAGGCACTCTATCAGAAAT
GCAAAAATATATCGCAACAGTTTGCAAGCTTTCTAGACCAT
BO13496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 810 | CG13077-PA | 1..807 | 17..823 | 4020 | 99.9 | Plus |
CG13077-RB | 681 | CG13077-PB | 1..678 | 146..823 | 3375 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-RA | 1146 | CG13077-RA | 274..1080 | 17..823 | 4020 | 99.9 | Plus |
CG13077-RB | 849 | CG13077-RB | 1..783 | 41..823 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19566985..19567293 | 515..823 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 19566136..19566441 | 17..322 | 1530 | 100 | Plus |
2L | 23513712 | 2L | 19566507..19566701 | 322..516 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:32 has no hits.
BO13496.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:11 Download gff for
BO13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 277..1081 | 19..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:10:59 Download gff for
BO13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 274..1080 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:17 Download gff for
BO13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 275..1081 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:11 Download gff for
BO13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13077-RA | 274..1080 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:11 Download gff for
BO13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19566136..19566441 | 17..322 | 100 | -> | Plus |
2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
2L | 19566986..19567293 | 516..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:10:59 Download gff for
BO13496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19566136..19566441 | 17..322 | 100 | -> | Plus |
arm_2L | 19566508..19566700 | 323..515 | 99 | -> | Plus |
arm_2L | 19566986..19567293 | 516..825 | 99 | | Plus |
BO13496.pep Sequence
Translation from 16 to 841
> BO13496.pep
MSESKQPVLSRTQTSADYGSTLRTDTPRRPTFIPIESPRRYSKMAHGSLS
GHEAENRLQRLEYFLNVLNQMCIGFITIYISYLTLRTGLSGTGLHAWLVT
IGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAGALI
KMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNK
TFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKCLTLISLVLS
SYGPMKALYQKCKNISQQFASFLDH
BO13496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13077-PA | 269 | CG13077-PA | 1..269 | 1..269 | 1393 | 100 | Plus |
CG13077-PB | 226 | CG13077-PB | 1..226 | 44..269 | 1173 | 100 | Plus |
CG13078-PA | 222 | CG13078-PA | 12..221 | 58..266 | 521 | 50.2 | Plus |
CG10165-PD | 228 | CG10165-PD | 13..224 | 60..270 | 207 | 25.9 | Plus |
CG10165-PC | 228 | CG10165-PC | 13..224 | 60..270 | 207 | 25.9 | Plus |