Clone Sequence Records
BO13501.3prime Sequence
891 bp (849 high quality bases) assembled on 2006-05-08
> BO13501.3prime
ATGGTCTAGAAAGCTTGCTGACTTTTCTAAATCGTCAATTAGACTATAGT
TCTTGCTTATATGACCAAGTTTTATGCCCTGTTTGATTAGTTCTAATGCT
ATCTTTTTATTGCTACTCGATGGACCAATAAAGGCCACGACTAGTTCATC
TGCATCTTTTGGAGGTTCACAGCTGTGATCCCAACCTCTGGCCTCGTAGA
TGTTTTCGTCCCCAGCCGCAACGAAATTATAGTTAATATCCTTATATCCA
TTGCTCTCGATGTGCCAATTTTGCAGAAGGCGCACTCGAAAAGTGCACTC
GGCTTGAGTGAAACATGATGGCGTGTTGGTTGCCACAAATCTCACGCTCT
CAATTGGCAGCTTCAAAGGAGTAAGTGGCACTATAGGTGGCTGGGCCAAC
CAATAGGGTCGGGTAACGATCTTTACAGTCTCATTGCTTAGGAGTCGCAA
TGATGTTGGATCCTGCGTGAATCGGGGCCAATTTTGCATCAGCTCGAAAA
GCTTCTGGCCAGGACTTTCGGTGGGGCTTAATTGTCGATGGGCATATATA
TGATAATCCGGTTGCAATCTATGGAGACGTACGCCCTCGTCCATCAGTCG
CTTGGCTGCTTCGATTTGTCGAGCTGGTGGCTCCATATTCACAAAAGTTC
CGATAAAGGCTATGCTAACGGAGATGGCACCATATCCATTCACATGCTGA
CCCTGGATGTGCCAGCCGCGTCCTACGTATATTTGACCATCGCCGCCCAC
CAAAAAGTTATAGCCAATGTCGACCCAACCAAAAGATTTCATATGGAACG
CCTGAATGGTCTTCATGCGGTATATGCAAACATCCTCTTGTTCGCATCCT
TCCGGTGCCGTGTGATGAATGATAATATTGGAGACGGGAAG
BO13501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4437-PA | 1110 | PGRP-LF-RA | 235..1107 | 891..19 | 4315 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1355 | CG4437-RA | 312..1184 | 891..19 | 4335 | 99.8 | Minus |
UGP-RE | 2686 | CG4347-RE | 2235..2669 | 19..453 | 2160 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9350884..9351318 | 453..19 | 2160 | 99.8 | Minus |
3L | 28110227 | 3L | 9350442..9350828 | 836..450 | 1935 | 100 | Minus |
3L | 28110227 | 3L | 9349991..9350048 | 891..834 | 260 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:11 has no hits.
BO13501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:01 Download gff for
BO13501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4437-PA | 235..1110 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:22 Download gff for
BO13501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4437-PA | 235..1110 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:45 Download gff for
BO13501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 312..1184 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:11 Download gff for
BO13501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 312..1184 | 19..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:11 Download gff for
BO13501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9349991..9350047 | 835..891 | 96 | -> | Minus |
3L | 9350444..9350828 | 450..834 | 100 | -> | Minus |
3L | 9350888..9351318 | 19..449 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:45 Download gff for
BO13501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9343091..9343147 | 835..891 | 96 | -> | Minus |
arm_3L | 9343544..9343928 | 450..834 | 100 | -> | Minus |
arm_3L | 9343988..9344418 | 19..449 | 100 | | Minus |
BO13501.5prime Sequence
928 bp (848 high quality bases) assembled on 2006-05-08
> BO13501.5prime
GAAGTTATCAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCA
GCCACCTATAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGA
GATTTGTGGCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACT
TTTCGAGTGCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAA
GGATATTAACTATAATTTCGTTGCGGCT
BO13501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4437-PA | 1110 | PGRP-LF-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1355 | CG4437-RA | 78..989 | 17..928 | 4560 | 100 | Plus |
UGP-RE | 2686 | CG4347-RE | 2430..2669 | 928..689 | 1185 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9350442..9350828 | 306..692 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 9350884..9351123 | 689..928 | 1185 | 99.6 | Plus |
3L | 28110227 | 3L | 9349896..9350048 | 156..308 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9349686..9349824 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:35:51 has no hits.
BO13501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:03 Download gff for
BO13501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4437-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:23 Download gff for
BO13501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4437-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:06 Download gff for
BO13501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 70..989 | 7..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:27 Download gff for
BO13501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 70..989 | 7..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:27 Download gff for
BO13501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9349678..9349824 | 7..155 | 97 | -> | Plus |
3L | 9349896..9350047 | 156..307 | 100 | -> | Plus |
3L | 9350444..9350828 | 308..692 | 100 | -> | Plus |
3L | 9350888..9351123 | 693..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:06 Download gff for
BO13501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9342996..9343147 | 156..307 | 100 | -> | Plus |
arm_3L | 9342778..9342924 | 7..155 | 97 | -> | Plus |
arm_3L | 9343544..9343928 | 308..692 | 100 | -> | Plus |
arm_3L | 9343988..9344223 | 693..928 | 100 | | Plus |
BO13501.complete Sequence
1141 bp assembled on 2006-10-11
GenBank Submission: FJ632795
> BO13501.complete
GAAGTTATCAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCA
GCCACCTATAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGA
GATTTGTGGCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACT
TTTCGAGTGCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAA
GGATATTAACTATAATTTCGTTGCGGCTGGGGACGAAAACATCTACGAGG
CCAGAGGTTGGGATCACAGCTGTGAACCTCCAAAAGATGCAGATGAACTA
GTCGTGGCCTTTATTGGTCCATCGAGTAGCAATAAAAAGATAGCATTAGA
ACTAATCAAACAGGGCATAAAACTTGGTCATATAAGCAAGAACTATAGTC
TAATTGACGATTTAGAAAAGTCAGCAAGCTTTCTAGACCAT
BO13501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1110 | CG4437-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1355 | CG4437-RA | 78..1184 | 17..1123 | 5535 | 100 | Plus |
UGP-RE | 2686 | CG4347-RE | 2235..2669 | 1123..689 | 2160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9350884..9351318 | 689..1123 | 2160 | 99.8 | Plus |
3L | 28110227 | 3L | 9350442..9350828 | 306..692 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 9349896..9350048 | 156..308 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9349686..9349824 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:35 has no hits.
BO13501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:19 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 1..1110 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:42 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 68..1182 | 7..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:35 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 78..1184 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:19 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 68..1182 | 7..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:45 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 78..1184 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:45 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9349686..9349824 | 17..155 | 100 | -> | Plus |
3L | 9349896..9350047 | 156..307 | 100 | -> | Plus |
3L | 9350444..9350828 | 308..692 | 100 | -> | Plus |
3L | 9350888..9351318 | 693..1125 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:35 Download gff for
BO13501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9342786..9342924 | 17..155 | 100 | -> | Plus |
arm_3L | 9342996..9343147 | 156..307 | 100 | -> | Plus |
arm_3L | 9343544..9343928 | 308..692 | 100 | -> | Plus |
arm_3L | 9343988..9344418 | 693..1125 | 99 | | Plus |
BO13501.pep Sequence
Translation from 16 to 1141
> BO13501.pep
MPKTVVVTHPGKPINNEKRFRFELLYFCVILLMVVGLAAGYFMWMMSFST
HSPNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVC
IYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGA
ISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLS
PTESPGQKLFELMQNWPRFTQDPTSLRLLSNETVKIVTRPYWLAQPPIVP
LTPLKLPIESVRFVATNTPSCFTQAECTFRVRLLQNWHIESNGYKDINYN
FVAAGDENIYEARGWDHSCEPPKDADELVVAFIGPSSSNKKIALELIKQG
IKLGHISKNYSLIDDLEKSASFLDH
BO13501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-PA | 369 | CG4437-PA | 1..369 | 1..369 | 1988 | 100 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 160..328 | 54..222 | 471 | 48.5 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 331..499 | 54..222 | 471 | 48.5 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 331..499 | 54..222 | 471 | 48.5 | Plus |
PGRP-LC-PC | 511 | CG4432-PC | 343..494 | 65..216 | 383 | 44.7 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 149..308 | 220..371 | 195 | 29.4 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 320..479 | 220..371 | 195 | 29.4 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 320..479 | 220..371 | 195 | 29.4 | Plus |