Clone BO13501 Report

Search the DGRC for BO13501

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LF-RA
Protein status:BO13501.pep: validated full length
Sequenced Size:1141

Clone Sequence Records

BO13501.3prime Sequence

891 bp (849 high quality bases) assembled on 2006-05-08

> BO13501.3prime
ATGGTCTAGAAAGCTTGCTGACTTTTCTAAATCGTCAATTAGACTATAGT
TCTTGCTTATATGACCAAGTTTTATGCCCTGTTTGATTAGTTCTAATGCT
ATCTTTTTATTGCTACTCGATGGACCAATAAAGGCCACGACTAGTTCATC
TGCATCTTTTGGAGGTTCACAGCTGTGATCCCAACCTCTGGCCTCGTAGA
TGTTTTCGTCCCCAGCCGCAACGAAATTATAGTTAATATCCTTATATCCA
TTGCTCTCGATGTGCCAATTTTGCAGAAGGCGCACTCGAAAAGTGCACTC
GGCTTGAGTGAAACATGATGGCGTGTTGGTTGCCACAAATCTCACGCTCT
CAATTGGCAGCTTCAAAGGAGTAAGTGGCACTATAGGTGGCTGGGCCAAC
CAATAGGGTCGGGTAACGATCTTTACAGTCTCATTGCTTAGGAGTCGCAA
TGATGTTGGATCCTGCGTGAATCGGGGCCAATTTTGCATCAGCTCGAAAA
GCTTCTGGCCAGGACTTTCGGTGGGGCTTAATTGTCGATGGGCATATATA
TGATAATCCGGTTGCAATCTATGGAGACGTACGCCCTCGTCCATCAGTCG
CTTGGCTGCTTCGATTTGTCGAGCTGGTGGCTCCATATTCACAAAAGTTC
CGATAAAGGCTATGCTAACGGAGATGGCACCATATCCATTCACATGCTGA
CCCTGGATGTGCCAGCCGCGTCCTACGTATATTTGACCATCGCCGCCCAC
CAAAAAGTTATAGCCAATGTCGACCCAACCAAAAGATTTCATATGGAACG
CCTGAATGGTCTTCATGCGGTATATGCAAACATCCTCTTGTTCGCATCCT
TCCGGTGCCGTGTGATGAATGATAATATTGGAGACGGGAAG

BO13501.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4437-PA 1110 PGRP-LF-RA 235..1107 891..19 4315 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1355 CG4437-RA 312..1184 891..19 4335 99.8 Minus
UGP-RE 2686 CG4347-RE 2235..2669 19..453 2160 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9350884..9351318 453..19 2160 99.8 Minus
3L 28110227 3L 9350442..9350828 836..450 1935 100 Minus
3L 28110227 3L 9349991..9350048 891..834 260 96.6 Minus
Blast to na_te.dros performed on 2015-02-11 10:08:11 has no hits.

BO13501.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:01 Download gff for BO13501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4437-PA 235..1110 18..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:22 Download gff for BO13501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4437-PA 235..1110 18..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:45 Download gff for BO13501.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 312..1184 19..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:11 Download gff for BO13501.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 312..1184 19..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:11 Download gff for BO13501.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9349991..9350047 835..891 96 -> Minus
3L 9350444..9350828 450..834 100 -> Minus
3L 9350888..9351318 19..449 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:45 Download gff for BO13501.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9343091..9343147 835..891 96 -> Minus
arm_3L 9343544..9343928 450..834 100 -> Minus
arm_3L 9343988..9344418 19..449 100   Minus

BO13501.5prime Sequence

928 bp (848 high quality bases) assembled on 2006-05-08

> BO13501.5prime
GAAGTTATCAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCA
GCCACCTATAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGA
GATTTGTGGCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACT
TTTCGAGTGCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAA
GGATATTAACTATAATTTCGTTGCGGCT

BO13501.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4437-PA 1110 PGRP-LF-RA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1355 CG4437-RA 78..989 17..928 4560 100 Plus
UGP-RE 2686 CG4347-RE 2430..2669 928..689 1185 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9350442..9350828 306..692 1935 100 Plus
3L 28110227 3L 9350884..9351123 689..928 1185 99.6 Plus
3L 28110227 3L 9349896..9350048 156..308 765 100 Plus
3L 28110227 3L 9349686..9349824 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:35:51 has no hits.

BO13501.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:03 Download gff for BO13501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4437-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:23 Download gff for BO13501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4437-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:06 Download gff for BO13501.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 70..989 7..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:56:27 Download gff for BO13501.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 70..989 7..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:56:27 Download gff for BO13501.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9349678..9349824 7..155 97 -> Plus
3L 9349896..9350047 156..307 100 -> Plus
3L 9350444..9350828 308..692 100 -> Plus
3L 9350888..9351123 693..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:06 Download gff for BO13501.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9342996..9343147 156..307 100 -> Plus
arm_3L 9342778..9342924 7..155 97 -> Plus
arm_3L 9343544..9343928 308..692 100 -> Plus
arm_3L 9343988..9344223 693..928 100   Plus

BO13501.complete Sequence

1141 bp assembled on 2006-10-11

GenBank Submission: FJ632795

> BO13501.complete
GAAGTTATCAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCA
GCCACCTATAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGA
GATTTGTGGCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACT
TTTCGAGTGCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAA
GGATATTAACTATAATTTCGTTGCGGCTGGGGACGAAAACATCTACGAGG
CCAGAGGTTGGGATCACAGCTGTGAACCTCCAAAAGATGCAGATGAACTA
GTCGTGGCCTTTATTGGTCCATCGAGTAGCAATAAAAAGATAGCATTAGA
ACTAATCAAACAGGGCATAAAACTTGGTCATATAAGCAAGAACTATAGTC
TAATTGACGATTTAGAAAAGTCAGCAAGCTTTCTAGACCAT

BO13501.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1110 CG4437-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1355 CG4437-RA 78..1184 17..1123 5535 100 Plus
UGP-RE 2686 CG4347-RE 2235..2669 1123..689 2160 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9350884..9351318 689..1123 2160 99.8 Plus
3L 28110227 3L 9350442..9350828 306..692 1935 100 Plus
3L 28110227 3L 9349896..9350048 156..308 765 100 Plus
3L 28110227 3L 9349686..9349824 17..155 695 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:48:35 has no hits.

BO13501.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:19 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 1..1110 17..1124 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:42 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 68..1182 7..1123 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:35 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 78..1184 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:19 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 68..1182 7..1123 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:45 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 78..1184 17..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:45 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9349686..9349824 17..155 100 -> Plus
3L 9349896..9350047 156..307 100 -> Plus
3L 9350444..9350828 308..692 100 -> Plus
3L 9350888..9351318 693..1125 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:35 Download gff for BO13501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9342786..9342924 17..155 100 -> Plus
arm_3L 9342996..9343147 156..307 100 -> Plus
arm_3L 9343544..9343928 308..692 100 -> Plus
arm_3L 9343988..9344418 693..1125 99   Plus

BO13501.pep Sequence

Translation from 16 to 1141

> BO13501.pep
MPKTVVVTHPGKPINNEKRFRFELLYFCVILLMVVGLAAGYFMWMMSFST
HSPNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVC
IYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGA
ISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLS
PTESPGQKLFELMQNWPRFTQDPTSLRLLSNETVKIVTRPYWLAQPPIVP
LTPLKLPIESVRFVATNTPSCFTQAECTFRVRLLQNWHIESNGYKDINYN
FVAAGDENIYEARGWDHSCEPPKDADELVVAFIGPSSSNKKIALELIKQG
IKLGHISKNYSLIDDLEKSASFLDH

BO13501.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-PA 369 CG4437-PA 1..369 1..369 1988 100 Plus
PGRP-LC-PE 329 CG4432-PE 160..328 54..222 471 48.5 Plus
PGRP-LC-PD 500 CG4432-PD 331..499 54..222 471 48.5 Plus
PGRP-LC-PA 500 CG4432-PA 331..499 54..222 471 48.5 Plus
PGRP-LC-PC 511 CG4432-PC 343..494 65..216 383 44.7 Plus
PGRP-LC-PE 329 CG4432-PE 149..308 220..371 195 29.4 Plus
PGRP-LC-PD 500 CG4432-PD 320..479 220..371 195 29.4 Plus
PGRP-LC-PA 500 CG4432-PA 320..479 220..371 195 29.4 Plus