Clone BO13502 Report

Search the DGRC for BO13502

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG14427-RA
Protein status:BO13502.pep: Imported from assembly
Sequenced Size:790

Clone Sequence Records

BO13502.complete Sequence

790 bp assembled on 2010-02-09

GenBank Submission: FJ632796

> BO13502.complete
GAAGTTATCAGTCGACATGGGTTGTTGTGCAAGCAATCTGAAGCTCAAGG
AGCTGAGCAGCCTGAATAGCAGCATCTATGTGGCCTCCGGCGGATCGGCA
AGTCGCTCCCAGAAGCGTTTGTACAGCAGTCGCAACAGCAGCGGAGTGGG
CAGCAGCAGCAGCGGTAGCAGCAGCGGTAGCAGCAGCTCCTCATCGTCCA
GTCGCAGCATCTGGAGCCGCTCCAGCCAGCCGATTTGCGATGATTTCGCA
GAGCAACCACAACTGGACAAATCCTGCGGTTACTACACCTGCAGCAGCGC
CAATTCATCGCCGAGAAAGGGCCAGGAGAATGACGAGGAGATGGAGGGAG
TGCTTATGCGCACGCAGGACATGAGTGCATCATCCCGAGACTCTACACAA
TCCGATCAAATGGTGGGCAATCTGGAGTGGGAGATGCACATGATGCAGCA
GGCGCAGCGCATTATGCCCAAGACCTCGTCGCCGATTTGCCAAAGAAGGG
ATAATGCTCAGATGCCTCCCTCATCGTACCAGAAGTGGAGAAACTATCTG
CAATCCACGCCAGCGCACATGCTGCACAATGTCACCCACATTCCGGAGGC
AATTGCCGGCCACTTTTGCCCCACCAGCTTTCCGGGCTTCAGCGACCTGG
AGGAGATGGAGAGTGCGGCCAAGAGGTTCAAGGTGGATTTCGAGAAGGAA
CCACTGGAGGAGCCCATGTACACCACCTACCAATTGCTAGCCGGGCACAC
GCACACCATATCCACAGATCTGGCAAGCTTTCTAGACCAT

BO13502.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-RA 759 CG14427-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-RA 1167 CG14427-RA 87..843 16..772 3785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7040689..7041445 16..772 3785 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:29:04 has no hits.

BO13502.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:37 Download gff for BO13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 83..838 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:09 Download gff for BO13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 88..843 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:41 Download gff for BO13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 83..838 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:55 Download gff for BO13502.complete
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 88..843 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:55 Download gff for BO13502.complete
Subject Subject Range Query Range Percent Splice Strand
X 7040690..7041445 17..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:09 Download gff for BO13502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6934723..6935478 17..774 99   Plus

BO13502.5prime Sequence

788 bp (771 high quality bases) assembled on 2006-05-08

> BO13502.5prime
GAAGTTATCAGTCGACATGGGTTGTTGTGCAAGCAATCTGAAGCTCAAGG
AGCTGAGCAGCCTGAATAGCAGCATCTATGTGGCCTCCGGCGGATCGGCA
AGTCGCTCCCAGAAGCGTTTGTACAGCAGTCGCAACAGCAGCGGAGTGGG
CAGCAGCAGCAGCGGTAGCAGCAGCGGTAGCAGCAGCTCCTCATCGTCCA
GTCGCAGCATCTGGAGCCGCTCCAGCCAGCCGATTTGCGATGATTTCGCA
GAGCAACCACAACTGGACAAATCCTGCGGTTACTACACCTGCAGCAGCGC
CAATTCATCGCCGAGAAAGGGCCAGGAGAATGACGAGGAGATGGAGGGAG
TGCTTATGCGCACGCAGGACATGAGTGCATCATCCCGAGACTCTACACAA
TCCGATCAAATGGTGGGCAATCTGGAGTGGGAGATGCACATGATGCAGCA
GGCGCAGCGCATTATGCCCAAGACCTCGTCGCCGATTTGCCAAAGAAGGG
ATAATGCTCAGATGCCTCCCTCATCGTACCAGAAGTGGAGAAACTATCTG
CAATCCACGCCAGCGCACATGCTGCACAATGTCACCCACATTCCGGAGGC
AATTGCCGGCCACTTTTGCCCCACCAGCTTTCCGGGCTTCAGCGACCTGG
AGGAGATGGAGAGTGCGGCCAAGAGGTTCAAGGTGGATTTCGAGAAGGAA
CCACTGGAGGAGCCCATGTACACCACCTACCAATTGCTAGCCGGGCACAC
GCACACCATATCCACAGATCTGGCAAGCTTTCTAGACC

BO13502.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-PA 759 CG14427-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-RA 1167 CG14427-RA 87..843 16..772 3785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7040689..7041445 16..772 3785 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:52:59 has no hits.

BO13502.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:03 Download gff for BO13502.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14427-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:24 Download gff for BO13502.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14427-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:28 Download gff for BO13502.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 87..849 16..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:53 Download gff for BO13502.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14427-RA 87..849 16..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:53 Download gff for BO13502.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7040689..7041451 16..778 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:28 Download gff for BO13502.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6934722..6935484 16..778 99   Plus

BO13502.pep Sequence

Translation from 16 to 790

> BO13502.pep
MGCCASNLKLKELSSLNSSIYVASGGSASRSQKRLYSSRNSSGVGSSSSG
SSSGSSSSSSSSRSIWSRSSQPICDDFAEQPQLDKSCGYYTCSSANSSPR
KGQENDEEMEGVLMRTQDMSASSRDSTQSDQMVGNLEWEMHMMQQAQRIM
PKTSSPICQRRDNAQMPPSSYQKWRNYLQSTPAHMLHNVTHIPEAIAGHF
CPTSFPGFSDLEEMESAAKRFKVDFEKEPLEEPMYTTYQLLAGHTHTIST
DLASFLDH

BO13502.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14427-PA 252 CG14427-PA 1..252 1..252 1315 100 Plus