Clone Sequence Records
BO13503.3prime Sequence
846 bp (779 high quality bases) assembled on 2006-05-08
> BO13503.3prime
ATGGTCTAGAAAGCTTGCCGAGGAGACGTCCGTCTCGGATCCGTCCACGT
CGCCCGGCGGATTGCGCTTTATGCAGTCGCGTATGCTTTGCAGGATGATG
CCGGTCCGGCGGTCCAGCGCCTCCAGGTGCGGCTGCCAGAGCACCGGACT
GACGGGATCCTGGCTCAGGGATTCGCTCATCAGCTGGGACAGCGGCTTGG
GACCATTGTGGAAGTCTAGCAGCTTGACGAGCGTCGACTTGCGTATCAGG
CAGCACTGCAGCACCGGCGCCAGGATGGAGAGCTCGTCGTGGAAGGGCCG
CCCGAAACCACGGCCGTGGTCCAAATGCAGGGGGAAAGTCTCGTTGCCGT
AGACCTTGAATGTCTCGTAATGATGACGATCCATGTTGCCAGTGAGAAAA
TCAAAGACGGCCATGTCCATAAGGTCGTACAGTCGCCTTCCATCGTCGTA
GGGCGGAATATCACGGACCAGGGCACAATAATTGGCATCTGTCTCCCATT
GGGCCTTCTTCCTTTTGTGGTAGGACCGTCGCCAGGGATGCCGCCACAGC
TTGCGATTGCCCGACTCAAAGTTGGGCAGAAAGGCGGCGAAGGAGCCCTC
CAACATGTCCGGATTGCCGCAAATGGCATGCGAGGTGTCACAATAGTACG
AGCACTTGCCATGGAAGCATAAATTCAGCGATGGCGAAACAAAGAACGTC
TTCAATAAATTCTCCTCGGCCAGTTGATAAATTTCGGTCGTAATGTTCAG
CGTACGACCGGCAACGGGCATGGCACGCCGGAATCCCAGGATCCTGTCCA
GGTGGAAGGCGGCAATCTCGGCGTTGTGGCGCTCATAGTCCGTGAA
BO13503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-PA | 1587 | CG31145-RA | 757..1584 | 846..19 | 4140 | 100 | Minus |
CG31145-PB | 1587 | CG31145-RB | 757..1584 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RF | 3714 | CG31145-RF | 1784..2611 | 846..19 | 4140 | 100 | Minus |
CG31145-RC | 4524 | CG31145-RC | 2594..3421 | 846..19 | 4140 | 100 | Minus |
CG31145-RB | 2595 | CG31145-RB | 1666..2493 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23611893..23612139 | 550..796 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 23606854..23607049 | 19..214 | 980 | 100 | Plus |
3R | 32079331 | 3R | 23607525..23607665 | 215..355 | 705 | 100 | Plus |
3R | 32079331 | 3R | 23608368..23608482 | 355..469 | 575 | 100 | Plus |
3R | 32079331 | 3R | 23608717..23608801 | 467..551 | 425 | 100 | Plus |
3R | 32079331 | 3R | 23614376..23614429 | 793..846 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:20:00 has no hits.
BO13503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:05 Download gff for
BO13503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-PA | 759..1587 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:26 Download gff for
BO13503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-PB | 759..1587 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:54 Download gff for
BO13503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 1666..2497 | 13..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:53 Download gff for
BO13503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 1666..2497 | 13..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:53 Download gff for
BO13503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23606850..23607049 | 13..214 | 98 | <- | Plus |
3R | 23607525..23607665 | 215..355 | 100 | <- | Plus |
3R | 23608369..23608481 | 356..468 | 100 | <- | Plus |
3R | 23608719..23608799 | 469..549 | 100 | <- | Plus |
3R | 23611893..23612136 | 550..793 | 100 | <- | Plus |
3R | 23614377..23614429 | 794..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:54 Download gff for
BO13503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19432572..19432771 | 13..214 | 98 | <- | Plus |
arm_3R | 19433247..19433387 | 215..355 | 100 | <- | Plus |
arm_3R | 19434091..19434203 | 356..468 | 100 | <- | Plus |
arm_3R | 19434441..19434521 | 469..549 | 100 | <- | Plus |
arm_3R | 19437615..19437858 | 550..793 | 100 | <- | Plus |
arm_3R | 19440099..19440151 | 794..846 | 100 | | Plus |
BO13503.5prime Sequence
873 bp (841 high quality bases) assembled on 2006-05-08
> BO13503.5prime
GAAGTTATCAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGC
GACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTT
ATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCA
GCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGG
GTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGC
AACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAG
TGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAG
CAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCA
CACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTC
GCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGC
TGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAG
CGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAGGACAC
TCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATG
TTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCA
AACGATATCAAGGCCTTAATGAAGCCGATGCGGTTTCCGCGGGAGCAGCA
AACGTTGCCCAACCACTTCTACTTCACGGACTATGAGCGCCACAACGCCG
AGATTGCCGCCTTCCACCTGGACAGGATCCTGGGATTCCGGCGTGCCATG
CCCGTTGCCGGTCGTACGCTGAA
BO13503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-PA | 1587 | CG31145-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
CG31145-PB | 1587 | CG31145-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RF | 3714 | CG31145-RF | 1027..1884 | 16..873 | 4290 | 100 | Plus |
CG31145-RD | 3519 | CG31145-RD | 1837..2694 | 16..873 | 4290 | 100 | Plus |
CG31145-RC | 4524 | CG31145-RC | 1837..2694 | 16..873 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23622371..23622651 | 528..248 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 23626597..23626830 | 249..16 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 23616198..23616325 | 653..526 | 640 | 100 | Minus |
3R | 32079331 | 3R | 23614376..23614470 | 826..732 | 475 | 100 | Minus |
3R | 32079331 | 3R | 23615126..23615207 | 734..653 | 410 | 100 | Minus |
3R | 32079331 | 3R | 23612089..23612139 | 873..823 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:52:53 has no hits.
BO13503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:06 Download gff for
BO13503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:27 Download gff for
BO13503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-PB | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:26 Download gff for
BO13503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1828..2694 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:51 Download gff for
BO13503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1828..2694 | 9..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:51 Download gff for
BO13503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23622371..23622649 | 250..528 | 100 | <- | Minus |
3R | 23626597..23626833 | 9..249 | 98 | | Minus |
3R | 23612089..23612136 | 826..873 | 100 | <- | Minus |
3R | 23614377..23614469 | 733..825 | 100 | <- | Minus |
3R | 23615128..23615206 | 654..732 | 100 | <- | Minus |
3R | 23616198..23616322 | 529..653 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:26 Download gff for
BO13503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19437811..19437858 | 826..873 | 100 | <- | Minus |
arm_3R | 19440099..19440191 | 733..825 | 100 | <- | Minus |
arm_3R | 19440850..19440928 | 654..732 | 100 | <- | Minus |
arm_3R | 19441920..19442044 | 529..653 | 100 | <- | Minus |
arm_3R | 19448093..19448371 | 250..528 | 100 | <- | Minus |
arm_3R | 19452319..19452555 | 9..249 | 98 | | Minus |
BO13503.complete Sequence
1618 bp assembled on 2007-07-13
GenBank Submission: FJ632797
> BO13503.complete
GAAGTTATCAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGC
GACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTT
ATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCA
GCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGG
GTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGC
AACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAG
TGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAG
CAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCA
CACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTC
GCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGC
TGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAG
CGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAGGACAC
TCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATG
TTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCA
AACGATATCAAGGCCTTAATGAAGCCGATGCGGTTTCCGCGGGAGCAGCA
AACGTTGCCCAACCACTTCTACTTCACGGACTATGAGCGCCACAACGCCG
AGATTGCCGCCTTCCACCTGGACAGGATCCTGGGATTCCGGCGTGCCATG
CCCGTTGCCGGTCGTACGCTGAACATTACGACCGAAATTTATCAACTGGC
CGAGGAGAATTTATTGAAGACGTTCTTTGTTTCGCCATCGCTGAATTTAT
GCTTCCATGGCAAGTGCTCGTACTATTGTGACACCTCGCATGCCATTTGC
GGCAATCCGGACATGTTGGAGGGCTCCTTCGCCGCCTTTCTGCCCAACTT
TGAGTCGGGCAATCGCAAGCTGTGGCGGCATCCCTGGCGACGGTCCTACC
ACAAAAGGAAGAAGGCCCAATGGGAGACAGATGCCAATTATTGTGCCCTG
GTCCGTGATATTCCGCCCTACGACGATGGAAGGCGACTGTACGACCTTAT
GGACATGGCCGTCTTTGATTTTCTCACTGGCAACATGGATCGTCATCATT
ACGAGACATTCAAGGTCTACGGCAACGAGACTTTCCCCCTGCATTTGGAC
CACGGCCGTGGTTTCGGGCGGCCCTTCCACGACGAGCTCTCCATCCTGGC
GCCGGTGCTGCAGTGCTGCCTGATACGCAAGTCGACGCTCGTCAAGCTGC
TAGACTTCCACAATGGTCCCAAGCCGCTGTCCCAGCTGATGAGCGAATCC
CTGAGCCAGGATCCCGTCAGTCCGGTGCTCTGGCAGCCGCACCTGGAGGC
GCTGGACCGCCGGACCGGCATCATCCTGCAAAGCATACGCGACTGCATAA
AGCGCAATCCGCCGGGCGACGTGGACGGATCCGAGACGGACGTCTCCTCG
GCAAGCTTTCTAGACCAT
BO13503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RC | 2943 | CG31145-PC | 1356..2940 | 16..1600 | 7925 | 100 | Plus |
CG31145-RF | 1587 | CG31145-PF | 1..1584 | 17..1600 | 7920 | 100 | Plus |
CG31145-RB | 1587 | CG31145-PB | 1..1584 | 17..1600 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RF | 3714 | CG31145-RF | 1027..2611 | 16..1600 | 7925 | 100 | Plus |
CG31145-RC | 4524 | CG31145-RC | 1837..3421 | 16..1600 | 7925 | 100 | Plus |
CG31145-RB | 2595 | CG31145-RB | 909..2493 | 16..1600 | 7925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23622371..23622651 | 528..248 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 23611893..23612139 | 1069..823 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23626597..23626830 | 249..16 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 23606854..23607049 | 1600..1405 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23607525..23607665 | 1404..1264 | 705 | 100 | Minus |
3R | 32079331 | 3R | 23616198..23616325 | 653..526 | 640 | 100 | Minus |
3R | 32079331 | 3R | 23608368..23608482 | 1264..1150 | 575 | 100 | Minus |
3R | 32079331 | 3R | 23614376..23614470 | 826..732 | 475 | 100 | Minus |
3R | 32079331 | 3R | 23608717..23608801 | 1152..1068 | 425 | 100 | Minus |
3R | 32079331 | 3R | 23615126..23615207 | 734..653 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:39:43 has no hits.
BO13503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:48 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RE | 705..2301 | 9..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:55 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1835..3418 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:19 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 910..2493 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:48 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1825..3422 | 9..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:29 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 910..2493 | 17..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:29 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23606850..23607049 | 1405..1602 | 99 | <- | Minus |
3R | 23607525..23607665 | 1264..1404 | 100 | <- | Minus |
3R | 23608369..23608481 | 1151..1263 | 100 | <- | Minus |
3R | 23608719..23608799 | 1070..1150 | 100 | <- | Minus |
3R | 23611893..23612136 | 826..1069 | 100 | <- | Minus |
3R | 23614377..23614469 | 733..825 | 100 | <- | Minus |
3R | 23615128..23615206 | 654..732 | 100 | <- | Minus |
3R | 23616198..23616322 | 529..653 | 100 | <- | Minus |
3R | 23622371..23622649 | 250..528 | 100 | <- | Minus |
3R | 23626597..23626829 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:19 Download gff for
BO13503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19434441..19434521 | 1070..1150 | 100 | <- | Minus |
arm_3R | 19437615..19437858 | 826..1069 | 100 | <- | Minus |
arm_3R | 19440099..19440191 | 733..825 | 100 | <- | Minus |
arm_3R | 19440850..19440928 | 654..732 | 100 | <- | Minus |
arm_3R | 19441920..19442044 | 529..653 | 100 | <- | Minus |
arm_3R | 19448093..19448371 | 250..528 | 100 | <- | Minus |
arm_3R | 19452319..19452551 | 17..249 | 100 | | Minus |
arm_3R | 19432572..19432771 | 1405..1602 | 99 | <- | Minus |
arm_3R | 19433247..19433387 | 1264..1404 | 100 | <- | Minus |
arm_3R | 19434091..19434203 | 1151..1263 | 100 | <- | Minus |
BO13503.pep Sequence
Translation from 16 to 1618
> BO13503.pep
MAVLRTMKLKERLVISLGATLVLLTLLLIVDVQMDFGVANRHLLQQQHQK
IRLGNDYDGGTGGGGMLHEFKRKFLQKSNASGSKEASTQAGASQSGGATS
GQDAAAGASGGAAGPGTSRSTSTRKPTPHDRYADLQKHLLSDEYSHVIVD
NAPDVSRDNPTLAEMLHRKASANASNLERFQLRITKKELYGEQDTLVDAV
LRDMIKLPIQHVVQKEGGTQLKLIIEYPNDIKALMKPMRFPREQQTLPNH
FYFTDYERHNAEIAAFHLDRILGFRRAMPVAGRTLNITTEIYQLAEENLL
KTFFVSPSLNLCFHGKCSYYCDTSHAICGNPDMLEGSFAAFLPNFESGNR
KLWRHPWRRSYHKRKKAQWETDANYCALVRDIPPYDDGRRLYDLMDMAVF
DFLTGNMDRHHYETFKVYGNETFPLHLDHGRGFGRPFHDELSILAPVLQC
CLIRKSTLVKLLDFHNGPKPLSQLMSESLSQDPVSPVLWQPHLEALDRRT
GIILQSIRDCIKRNPPGDVDGSETDVSSASFLDH
BO13503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-PF | 528 | CG31145-PF | 1..528 | 1..528 | 2786 | 100 | Plus |
CG31145-PC | 980 | CG31145-PC | 453..980 | 1..528 | 2786 | 100 | Plus |
CG31145-PB | 528 | CG31145-PB | 1..528 | 1..528 | 2786 | 100 | Plus |
CG31145-PA | 528 | CG31145-PA | 1..528 | 1..528 | 2786 | 100 | Plus |
CG31145-PD | 915 | CG31145-PD | 453..915 | 1..463 | 2439 | 99.8 | Plus |