Clone BO13504 Report

Search the DGRC for BO13504

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG3074-RA
Protein status:BO13504.pep: validated full length
Sequenced Size:1327

Clone Sequence Records

BO13504.3prime Sequence

872 bp (750 high quality bases) assembled on 2006-05-08

> BO13504.3prime
ATGGTCTAGAAAGCTTGCAGCCGACTTCACATTGTAGTAGCTGTAGACGT
AGGGCCAGGAGGCCAGCACGTACTCCTCGATGCCGCACTCGTTGGAGCCT
CGTAGGATGCGGAAGTAGCCATGCTCGCCCCACCAAGATCCCCACGAGTT
CGCTGCGATCCAATACTTTTCACCATTGTGCTCCTCTCCCCAGCCCACCA
ACTTCACCGAGTGGAACCCAGTTGGCGCCTTTCGGTTGGCTGCTGTCTCG
CGGTACACACCGCCTGAGTAGGCGAAGAAGTCCCTGTTAACCCGCATGGT
GGCCTGTACGGGACCGGAGTGGAAGATCTCGGCCATAATGTCGGCTTCCC
GGTTCAAGCTGTAGGCCGGACCCACCGTGTAGAGGGAGTCCCTGTCCACA
TTGACCGGCTTTTGGCATCCATTGGCCCTCAGAGAGCGACTGTTGTGGCG
GATCTTGCAGGTGTCGCGGTGCTGTGTGTACGGATAGCAGTTCTCGTCGA
CCACGCCCTTCTTGTGCAAGTAGCGCCAGGCGGCGTCCAAGTGGCCACCC
TCGCAGCCCTGCTGGCGGCGTGTGCAGGAGAGGATGTTCTGGGCGGACAG
CTGGACATTCTCCTTGCCCTTGCTCTGGATGGCGAAGCGATCGCTGGCCA
CCGAGGTGGTGGACAGCACCCATGAGGCACCGCACCAGCCCTGGTCGGGC
ACCTCGGAGATGTAGCTGGACCACTTGTCCAGTGCGTTGAAGGAGCTGGG
CAGGCCATCGGTGGGATTCTTTAGACGCGTCATCGCCTTCACGCGGTACG
TGGGCTCCTTGGTGCCCAGACGCAGCTTTAGTCCCTCGGAGTACTTGCGA
CCCCACCACTGGTCATACTTGC

BO13504.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3074-PB 1296 CG3074-RB 440..1293 872..19 4270 100 Minus
CG3074-PA 1296 CG3074-RA 440..1293 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-RA 1989 CG3074-RA 590..1443 872..19 4270 100 Minus
Swim-RB 2049 CG3074-RB 650..1503 872..19 4270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22190582..22191294 160..872 3565 100 Plus
2R 25286936 2R 22190363..22190504 19..160 710 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:34:37 has no hits.

BO13504.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:07 Download gff for BO13504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3074-PB 440..1296 15..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:28 Download gff for BO13504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3074-PA 440..1296 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:09 Download gff for BO13504.3prime
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 650..1507 14..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:51 Download gff for BO13504.3prime
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 650..1507 14..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:51 Download gff for BO13504.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22190359..22190503 14..159 98 <- Plus
2R 22190582..22191294 160..872 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:09 Download gff for BO13504.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18077864..18078008 14..159 98 <- Plus
arm_2R 18078087..18078799 160..872 100   Plus

BO13504.5prime Sequence

813 bp (811 high quality bases) assembled on 2006-05-08

> BO13504.5prime
GAAGTTATCAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTC
TGGTCCTGCTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAA
AGGGACTTCCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGA
TCGGCACGACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCG
ATGAGTTCTGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGC
TCCTTCTGCATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGG
CGTCTACTTCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCC
GCTGCCTGGAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACC
GACGACGCGATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTC
TGCCCGCAAGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAA
AGCTGCGTCTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACG
CGTCTAAAGAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGA
CAAGTGGTCCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTG
CCTCATGGGTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATC
CAGAGCAAGGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTC
CTGCACACGCCGCCAGCAGGGCTGCGAGGGTGGCCACTTGGACGCCGCCT
GGCGCTACTTGCA

BO13504.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3074-PB 1296 CG3074-RB 1..797 17..813 3985 100 Plus
CG3074-PA 1296 CG3074-RA 1..797 17..813 3985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-RA 1989 CG3074-RA 150..947 16..813 3990 100 Plus
Swim-RB 2049 CG3074-RB 210..1007 16..813 3990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22190937..22191567 813..183 3155 100 Minus
2R 25286936 2R 22191662..22191828 182..16 835 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:50:26 has no hits.

BO13504.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:08 Download gff for BO13504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3074-PB 1..796 17..812 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:29 Download gff for BO13504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3074-PA 1..796 17..812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:29 Download gff for BO13504.5prime
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 205..1006 10..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:56 Download gff for BO13504.5prime
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 205..1006 10..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:56 Download gff for BO13504.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22190938..22191567 183..812 100 <- Minus
2R 22191662..22191831 10..182 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:29 Download gff for BO13504.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18078443..18079072 183..812 100 <- Minus
arm_2R 18079167..18079336 10..182 98   Minus

BO13504.complete Sequence

1327 bp assembled on 2006-10-11

GenBank Submission: FJ632798

> BO13504.complete
GAAGTTATCAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTC
TGGTCCTGCTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAA
AGGGACTTCCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGA
TCGGCACGACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCG
ATGAGTTCTGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGC
TCCTTCTGCATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGG
CGTCTACTTCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCC
GCTGCCTGGAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACC
GACGACGCGATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTC
TGCCCGCAAGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAA
AGCTGCGTCTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACG
CGTCTAAAGAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGA
CAAGTGGTCCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTG
CCTCATGGGTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATC
CAGAGCAAGGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTC
CTGCACACGCCGCCAGCAGGGCTGCGAGGGTGGCCACTTGGACGCCGCCT
GGCGCTACTTGCACAAGAAGGGCGTGGTCGACGAGAACTGCTATCCGTAC
ACACAGCACCGCGACACCTGCAAGATCCGCCACAACAGTCGCTCTCTGAG
GGCCAATGGATGCCAAAAGCCGGTCAATGTGGACAGGGACTCCCTCTACA
CGGTGGGTCCGGCCTACAGCTTGAACCGGGAAGCCGACATTATGGCCGAG
ATCTTCCACTCCGGTCCCGTACAGGCCACCATGCGGGTTAACAGGGACTT
CTTCGCCTACTCAGGCGGTGTGTACCGCGAGACAGCAGCCAACCGAAAGG
CGCCAACTGGGTTCCACTCGGTGAAGTTGGTGGGCTGGGGAGAGGAGCAC
AATGGTGAAAAGTATTGGATCGCAGCGAACTCGTGGGGATCTTGGTGGGG
CGAGCATGGCTACTTCCGCATCCTACGAGGCTCCAACGAGTGCGGCATCG
AGGAGTACGTGCTGGCCTCCTGGCCCTACGTCTACAGCTACTACAATGTG
AAGTCGGCTGCAAGCTTTCTAGACCAT

BO13504.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-RA 1296 CG3074-PA 1..1293 17..1309 6465 100 Plus
Swim-RB 1296 CG3074-PB 1..1293 17..1309 6465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-RA 1989 CG3074-RA 150..1443 16..1309 6470 100 Plus
Swim-RB 2049 CG3074-RB 210..1503 16..1309 6470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22190582..22191567 1168..183 4930 100 Minus
2R 25286936 2R 22191662..22191828 182..16 835 100 Minus
2R 25286936 2R 22190363..22190504 1309..1168 710 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:01:51 has no hits.

BO13504.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:21 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RA 1..1296 17..1313 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:44 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RA 146..1448 10..1314 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:37 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 211..1503 17..1311 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:22 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RA 146..1448 10..1314 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:38 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 211..1503 17..1311 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:38 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22190361..22190503 1169..1311 98 <- Minus
2R 22190582..22191567 183..1168 100 <- Minus
2R 22191662..22191827 17..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:37 Download gff for BO13504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18077866..18078008 1169..1311 98 <- Minus
arm_2R 18078087..18079072 183..1168 100 <- Minus
arm_2R 18079167..18079332 17..182 100   Minus

BO13504.pep Sequence

Translation from 16 to 1327

> BO13504.pep
MSIKCVHLVGLLVLLMGGANALFDHTLKRDFPGPYCARENTCCKDRHDGC
SVPISNTLCYCDEFCDRDDSSDCCPDYRSFCIGEVDPIISCEHNGVYFSK
YNTTWDNCNECRCLEGGSVQCDEDLCLTDDAIVHSVNSIHRLGWSARKYD
QWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKNPTDGLPSSFNALDKWSSY
ISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRRQ
QGCEGGHLDAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQ
KPVNVDRDSLYTVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSG
GVYRETAANRKAPTGFHSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYF
RILRGSNECGIEEYVLASWPYVYSYYNVKSAASFLDH

BO13504.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-PA 431 CG3074-PA 1..431 1..431 2415 100 Plus
Swim-PB 431 CG3074-PB 1..431 1..431 2415 100 Plus
CtsB1-PC 340 CG10992-PC 82..338 182..420 366 35.2 Plus
CtsB1-PA 340 CG10992-PA 82..338 182..420 366 35.2 Plus
CG4847-PE 390 CG4847-PE 139..390 157..422 287 30.9 Plus