Clone Sequence Records
BO13504.3prime Sequence
872 bp (750 high quality bases) assembled on 2006-05-08
> BO13504.3prime
ATGGTCTAGAAAGCTTGCAGCCGACTTCACATTGTAGTAGCTGTAGACGT
AGGGCCAGGAGGCCAGCACGTACTCCTCGATGCCGCACTCGTTGGAGCCT
CGTAGGATGCGGAAGTAGCCATGCTCGCCCCACCAAGATCCCCACGAGTT
CGCTGCGATCCAATACTTTTCACCATTGTGCTCCTCTCCCCAGCCCACCA
ACTTCACCGAGTGGAACCCAGTTGGCGCCTTTCGGTTGGCTGCTGTCTCG
CGGTACACACCGCCTGAGTAGGCGAAGAAGTCCCTGTTAACCCGCATGGT
GGCCTGTACGGGACCGGAGTGGAAGATCTCGGCCATAATGTCGGCTTCCC
GGTTCAAGCTGTAGGCCGGACCCACCGTGTAGAGGGAGTCCCTGTCCACA
TTGACCGGCTTTTGGCATCCATTGGCCCTCAGAGAGCGACTGTTGTGGCG
GATCTTGCAGGTGTCGCGGTGCTGTGTGTACGGATAGCAGTTCTCGTCGA
CCACGCCCTTCTTGTGCAAGTAGCGCCAGGCGGCGTCCAAGTGGCCACCC
TCGCAGCCCTGCTGGCGGCGTGTGCAGGAGAGGATGTTCTGGGCGGACAG
CTGGACATTCTCCTTGCCCTTGCTCTGGATGGCGAAGCGATCGCTGGCCA
CCGAGGTGGTGGACAGCACCCATGAGGCACCGCACCAGCCCTGGTCGGGC
ACCTCGGAGATGTAGCTGGACCACTTGTCCAGTGCGTTGAAGGAGCTGGG
CAGGCCATCGGTGGGATTCTTTAGACGCGTCATCGCCTTCACGCGGTACG
TGGGCTCCTTGGTGCCCAGACGCAGCTTTAGTCCCTCGGAGTACTTGCGA
CCCCACCACTGGTCATACTTGC
BO13504.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3074-PB | 1296 | CG3074-RB | 440..1293 | 872..19 | 4270 | 100 | Minus |
CG3074-PA | 1296 | CG3074-RA | 440..1293 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swim-RA | 1989 | CG3074-RA | 590..1443 | 872..19 | 4270 | 100 | Minus |
Swim-RB | 2049 | CG3074-RB | 650..1503 | 872..19 | 4270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22190582..22191294 | 160..872 | 3565 | 100 | Plus |
2R | 25286936 | 2R | 22190363..22190504 | 19..160 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:34:37 has no hits.
BO13504.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:07 Download gff for
BO13504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-PB | 440..1296 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:28 Download gff for
BO13504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-PA | 440..1296 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:09 Download gff for
BO13504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swim-RB | 650..1507 | 14..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:09:51 Download gff for
BO13504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swim-RB | 650..1507 | 14..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:09:51 Download gff for
BO13504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22190359..22190503 | 14..159 | 98 | <- | Plus |
2R | 22190582..22191294 | 160..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:09 Download gff for
BO13504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18077864..18078008 | 14..159 | 98 | <- | Plus |
arm_2R | 18078087..18078799 | 160..872 | 100 | | Plus |
BO13504.5prime Sequence
813 bp (811 high quality bases) assembled on 2006-05-08
> BO13504.5prime
GAAGTTATCAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTC
TGGTCCTGCTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAA
AGGGACTTCCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGA
TCGGCACGACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCG
ATGAGTTCTGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGC
TCCTTCTGCATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGG
CGTCTACTTCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCC
GCTGCCTGGAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACC
GACGACGCGATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTC
TGCCCGCAAGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAA
AGCTGCGTCTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACG
CGTCTAAAGAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGA
CAAGTGGTCCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTG
CCTCATGGGTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATC
CAGAGCAAGGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTC
CTGCACACGCCGCCAGCAGGGCTGCGAGGGTGGCCACTTGGACGCCGCCT
GGCGCTACTTGCA
BO13504.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3074-PB | 1296 | CG3074-RB | 1..797 | 17..813 | 3985 | 100 | Plus |
CG3074-PA | 1296 | CG3074-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swim-RA | 1989 | CG3074-RA | 150..947 | 16..813 | 3990 | 100 | Plus |
Swim-RB | 2049 | CG3074-RB | 210..1007 | 16..813 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22190937..22191567 | 813..183 | 3155 | 100 | Minus |
2R | 25286936 | 2R | 22191662..22191828 | 182..16 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:50:26 has no hits.
BO13504.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:08 Download gff for
BO13504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-PB | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:29 Download gff for
BO13504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-PA | 1..796 | 17..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:29 Download gff for
BO13504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swim-RB | 205..1006 | 10..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:56 Download gff for
BO13504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swim-RB | 205..1006 | 10..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:56 Download gff for
BO13504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22190938..22191567 | 183..812 | 100 | <- | Minus |
2R | 22191662..22191831 | 10..182 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:29 Download gff for
BO13504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18078443..18079072 | 183..812 | 100 | <- | Minus |
arm_2R | 18079167..18079336 | 10..182 | 98 | | Minus |
BO13504.complete Sequence
1327 bp assembled on 2006-10-11
GenBank Submission: FJ632798
> BO13504.complete
GAAGTTATCAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTC
TGGTCCTGCTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAA
AGGGACTTCCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGA
TCGGCACGACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCG
ATGAGTTCTGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGC
TCCTTCTGCATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGG
CGTCTACTTCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCC
GCTGCCTGGAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACC
GACGACGCGATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTC
TGCCCGCAAGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAA
AGCTGCGTCTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACG
CGTCTAAAGAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGA
CAAGTGGTCCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTG
CCTCATGGGTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATC
CAGAGCAAGGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTC
CTGCACACGCCGCCAGCAGGGCTGCGAGGGTGGCCACTTGGACGCCGCCT
GGCGCTACTTGCACAAGAAGGGCGTGGTCGACGAGAACTGCTATCCGTAC
ACACAGCACCGCGACACCTGCAAGATCCGCCACAACAGTCGCTCTCTGAG
GGCCAATGGATGCCAAAAGCCGGTCAATGTGGACAGGGACTCCCTCTACA
CGGTGGGTCCGGCCTACAGCTTGAACCGGGAAGCCGACATTATGGCCGAG
ATCTTCCACTCCGGTCCCGTACAGGCCACCATGCGGGTTAACAGGGACTT
CTTCGCCTACTCAGGCGGTGTGTACCGCGAGACAGCAGCCAACCGAAAGG
CGCCAACTGGGTTCCACTCGGTGAAGTTGGTGGGCTGGGGAGAGGAGCAC
AATGGTGAAAAGTATTGGATCGCAGCGAACTCGTGGGGATCTTGGTGGGG
CGAGCATGGCTACTTCCGCATCCTACGAGGCTCCAACGAGTGCGGCATCG
AGGAGTACGTGCTGGCCTCCTGGCCCTACGTCTACAGCTACTACAATGTG
AAGTCGGCTGCAAGCTTTCTAGACCAT
BO13504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swim-RA | 1296 | CG3074-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Swim-RB | 1296 | CG3074-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swim-RA | 1989 | CG3074-RA | 150..1443 | 16..1309 | 6470 | 100 | Plus |
Swim-RB | 2049 | CG3074-RB | 210..1503 | 16..1309 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22190582..22191567 | 1168..183 | 4930 | 100 | Minus |
2R | 25286936 | 2R | 22191662..22191828 | 182..16 | 835 | 100 | Minus |
2R | 25286936 | 2R | 22190363..22190504 | 1309..1168 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:01:51 has no hits.
BO13504.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:21 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-RA | 1..1296 | 17..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:44 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-RA | 146..1448 | 10..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:37 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swim-RB | 211..1503 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:22 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3074-RA | 146..1448 | 10..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:38 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Swim-RB | 211..1503 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:38 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22190361..22190503 | 1169..1311 | 98 | <- | Minus |
2R | 22190582..22191567 | 183..1168 | 100 | <- | Minus |
2R | 22191662..22191827 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:37 Download gff for
BO13504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18077866..18078008 | 1169..1311 | 98 | <- | Minus |
arm_2R | 18078087..18079072 | 183..1168 | 100 | <- | Minus |
arm_2R | 18079167..18079332 | 17..182 | 100 | | Minus |
BO13504.pep Sequence
Translation from 16 to 1327
> BO13504.pep
MSIKCVHLVGLLVLLMGGANALFDHTLKRDFPGPYCARENTCCKDRHDGC
SVPISNTLCYCDEFCDRDDSSDCCPDYRSFCIGEVDPIISCEHNGVYFSK
YNTTWDNCNECRCLEGGSVQCDEDLCLTDDAIVHSVNSIHRLGWSARKYD
QWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKNPTDGLPSSFNALDKWSSY
ISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRRQ
QGCEGGHLDAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQ
KPVNVDRDSLYTVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSG
GVYRETAANRKAPTGFHSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYF
RILRGSNECGIEEYVLASWPYVYSYYNVKSAASFLDH
BO13504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Swim-PA | 431 | CG3074-PA | 1..431 | 1..431 | 2415 | 100 | Plus |
Swim-PB | 431 | CG3074-PB | 1..431 | 1..431 | 2415 | 100 | Plus |
CtsB1-PC | 340 | CG10992-PC | 82..338 | 182..420 | 366 | 35.2 | Plus |
CtsB1-PA | 340 | CG10992-PA | 82..338 | 182..420 | 366 | 35.2 | Plus |
CG4847-PE | 390 | CG4847-PE | 139..390 | 157..422 | 287 | 30.9 | Plus |