Clone BO13508 Report

Search the DGRC for BO13508

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptcomm2-RA
Protein status:BO13508.pep: validated full length
Sequenced Size:1063

Clone Sequence Records

BO13508.5prime Sequence

857 bp (721 high quality bases) assembled on 2006-05-08

> BO13508.5prime
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGA
GAATCACCTGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGC
TGCTCCCAGCAACAACAGCAGCAGCAGCCACACCTGCAGCAGCAACAGTA
ACAGCAG

BO13508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7554-PA 1032 comm2-RA 1..841 17..857 4130 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1516 CG7554-RA 189..1030 16..857 4165 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15699202..15699662 476..16 2290 99.8 Minus
3L 28110227 3L 15698080..15698460 857..477 1875 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 06:08:37 has no hits.

BO13508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:14 Download gff for BO13508.5prime
Subject Subject Range Query Range Percent Splice Strand
comm2-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:38 Download gff for BO13508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7554-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:14 Download gff for BO13508.5prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 182..1030 10..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:34 Download gff for BO13508.5prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 182..1030 10..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:34 Download gff for BO13508.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15698080..15698460 477..857 99 <- Minus
3L 15699202..15699669 10..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:14 Download gff for BO13508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15691180..15691560 477..857 99 <- Minus
arm_3L 15692302..15692769 10..476 99   Minus

BO13508.3prime Sequence

793 bp (750 high quality bases) assembled on 2006-05-08

> BO13508.3prime
ATGGTCTAGAAAGCTTGCCCGCTTGATATCGTCTTTCGACTGGCTGTCTT
TTGACTTCGATTTCTTTTTCTCGTCGACGGTTTTGTACGAGCTGCCGAAT
ACCTCCGCATAACTGGGCACAATTGGCATCATCACAAAGTTTGGCTTAAT
CGACTCGCACGTGGGCGAAGCTGCCAATGTTGCAGATGTTGCTGTTGCTG
CTGTTACTGCTGTTACTGTTGCTGCTGCATGTGTTGCTGCTGCTGCTGTT
GTTGCTGGGAGCAGCGGCATTGTGGCATCACAAAACGAAGGTGTCTGCGG
TGCCAGGTGATTCTCGGGTGCGGCTGGAGGTGCTGATGTTGCAACTCCTG
GATGCTGCAGCTCCTGGCTGCTCCTCTCCTGCTTATTGAACACATTGAAC
ACACTCGGATAGACAATCAGGCAGGATGACTGCGGGGATTTTTGTAGCAG
CTCCAGAGCCGCCTCGTAGCTGGGCAATCCAGATACTAGGGTGTATTCCG
GAACCGGATCCTCCACATCCGGATGCAGTTTCAACGCCTCTATATCTACA
ATGGTGCACTGCGTCGAGCCATTTGCATTGTTGCGATAATTGCGTTTCCA
GGTGCGGAACTGATGGTACAGGAAGCAGGAGCAGATGCAGAAGACCATCG
AGATGAGGATCAGGGTGAAGACGATGCCCGATCCACACCTCGTTCATGAA
TTTATCGTACTCCAACTGCTGCTGCAGCTGATCCACACTGCTGCTGTCCA
GAATCACCCGATTGGCCAGATCGAAATCCATGATCTCCTCGCT

BO13508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7554-PA 1032 comm2-RA 370..1029 678..19 3300 100 Minus
CG7554-PA 1032 comm2-RA 256..371 793..678 580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1516 CG7554-RA 445..1218 793..19 3850 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15697892..15698460 19..587 2845 100 Plus
3L 28110227 3L 15699202..15699406 588..793 980 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 18:20:51 has no hits.

BO13508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:13 Download gff for BO13508.3prime
Subject Subject Range Query Range Percent Splice Strand
comm2-PA 256..1032 15..793 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:37 Download gff for BO13508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7554-PA 256..1032 15..793 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:02 Download gff for BO13508.3prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 445..1223 14..793 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:25 Download gff for BO13508.3prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 445..1223 14..793 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:25 Download gff for BO13508.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15697887..15698460 14..587 99 <- Plus
3L 15699202..15699406 588..793 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:02 Download gff for BO13508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15690987..15691560 14..587 99 <- Plus
arm_3L 15692302..15692506 588..793 99   Plus

BO13508.complete Sequence

1063 bp assembled on 2006-10-11

GenBank Submission: FJ632799

> BO13508.complete
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGA
GAATCACCTGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGC
TGCTCCCAGCAACAACAGCAGCAGCAGCAACACATGCAGCAGCAACAGTA
ACAGCAGTAACAGCAGCAACAGCAACATCTGCAACATTGGCAGCTTCGCC
CACGTGCGAGTCGATTAAGCCAAACTTTGTGATGATGCCAATTGTGCCCA
GTTATGCGGAGGTATTCGGCAGCTCGTACAAAACCGTCGACGAGAAAAAG
AAATCGAAGTCAAAAGACAGCCAGTCGAAAGACGATATCAAGCGGGCAAG
CTTTCTAGACCAT

BO13508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1032 CG7554-PA 1..1029 17..1045 5130 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1516 CG7554-RA 189..1218 16..1045 5135 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15697892..15698460 1045..477 2845 100 Minus
3L 28110227 3L 15699202..15699662 476..16 2290 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 08:28:43 has no hits.

BO13508.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:23 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 1..1032 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:11 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 181..1222 10..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:42 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 190..1218 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:23 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 181..1222 10..1050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:49 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 190..1218 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:49 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15697890..15698460 477..1047 99 <- Minus
3L 15699202..15699661 17..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:42 Download gff for BO13508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15690990..15691560 477..1047 99 <- Minus
arm_3L 15692302..15692761 17..476 99   Minus

BO13508.pep Sequence

Translation from 16 to 1063

> BO13508.pep
MEELPRALNYELSHDLHFDHYAGAAAQKILNSGRSSPEASTPTITTLDAI
SSSDFLKQIGQQILSSIQLKHQHQLNEVSHPRNSTSEEIMDFDLANRVIL
DSSSVDQLQQQLEYDKFMNEVWIGIVFTLILISMVFCICSCFLYHQFRTW
KRNYRNNANGSTQCTIVDIEALKLHPDVEDPVPEYTLVSGLPSYEAALEL
LQKSPQSSCLIVYPSVFNVFNKQERSSQELQHPGVATSAPPAAPENHLAP
QTPSFCDATMPLLPATTAAAATHAAATVTAVTAATATSATLAASPTCESI
KPNFVMMPIVPSYAEVFGSSYKTVDEKKKSKSKDSQSKDDIKRASFLDH

BO13508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-PA 343 CG7554-PA 1..343 1..343 1762 100 Plus
comm3-PE 423 CG42334-PE 144..310 113..286 222 30.2 Plus
comm3-PD 423 CG42334-PD 144..310 113..286 222 30.2 Plus
comm-PB 370 CG17943-PB 117..364 101..300 165 25.3 Plus
comm-PA 370 CG17943-PA 117..364 101..300 165 25.3 Plus