Clone Sequence Records
BO13508.5prime Sequence
857 bp (721 high quality bases) assembled on 2006-05-08
> BO13508.5prime
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGA
GAATCACCTGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGC
TGCTCCCAGCAACAACAGCAGCAGCAGCCACACCTGCAGCAGCAACAGTA
ACAGCAG
BO13508.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7554-PA | 1032 | comm2-RA | 1..841 | 17..857 | 4130 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1516 | CG7554-RA | 189..1030 | 16..857 | 4165 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15699202..15699662 | 476..16 | 2290 | 99.8 | Minus |
3L | 28110227 | 3L | 15698080..15698460 | 857..477 | 1875 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:08:37 has no hits.
BO13508.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:14 Download gff for
BO13508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:38 Download gff for
BO13508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7554-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:14 Download gff for
BO13508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 182..1030 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:34 Download gff for
BO13508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 182..1030 | 10..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:34 Download gff for
BO13508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15698080..15698460 | 477..857 | 99 | <- | Minus |
3L | 15699202..15699669 | 10..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:14 Download gff for
BO13508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15691180..15691560 | 477..857 | 99 | <- | Minus |
arm_3L | 15692302..15692769 | 10..476 | 99 | | Minus |
BO13508.3prime Sequence
793 bp (750 high quality bases) assembled on 2006-05-08
> BO13508.3prime
ATGGTCTAGAAAGCTTGCCCGCTTGATATCGTCTTTCGACTGGCTGTCTT
TTGACTTCGATTTCTTTTTCTCGTCGACGGTTTTGTACGAGCTGCCGAAT
ACCTCCGCATAACTGGGCACAATTGGCATCATCACAAAGTTTGGCTTAAT
CGACTCGCACGTGGGCGAAGCTGCCAATGTTGCAGATGTTGCTGTTGCTG
CTGTTACTGCTGTTACTGTTGCTGCTGCATGTGTTGCTGCTGCTGCTGTT
GTTGCTGGGAGCAGCGGCATTGTGGCATCACAAAACGAAGGTGTCTGCGG
TGCCAGGTGATTCTCGGGTGCGGCTGGAGGTGCTGATGTTGCAACTCCTG
GATGCTGCAGCTCCTGGCTGCTCCTCTCCTGCTTATTGAACACATTGAAC
ACACTCGGATAGACAATCAGGCAGGATGACTGCGGGGATTTTTGTAGCAG
CTCCAGAGCCGCCTCGTAGCTGGGCAATCCAGATACTAGGGTGTATTCCG
GAACCGGATCCTCCACATCCGGATGCAGTTTCAACGCCTCTATATCTACA
ATGGTGCACTGCGTCGAGCCATTTGCATTGTTGCGATAATTGCGTTTCCA
GGTGCGGAACTGATGGTACAGGAAGCAGGAGCAGATGCAGAAGACCATCG
AGATGAGGATCAGGGTGAAGACGATGCCCGATCCACACCTCGTTCATGAA
TTTATCGTACTCCAACTGCTGCTGCAGCTGATCCACACTGCTGCTGTCCA
GAATCACCCGATTGGCCAGATCGAAATCCATGATCTCCTCGCT
BO13508.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7554-PA | 1032 | comm2-RA | 370..1029 | 678..19 | 3300 | 100 | Minus |
CG7554-PA | 1032 | comm2-RA | 256..371 | 793..678 | 580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1516 | CG7554-RA | 445..1218 | 793..19 | 3850 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15697892..15698460 | 19..587 | 2845 | 100 | Plus |
3L | 28110227 | 3L | 15699202..15699406 | 588..793 | 980 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:20:51 has no hits.
BO13508.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:13 Download gff for
BO13508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-PA | 256..1032 | 15..793 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:37 Download gff for
BO13508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7554-PA | 256..1032 | 15..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:02 Download gff for
BO13508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 445..1223 | 14..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:25 Download gff for
BO13508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 445..1223 | 14..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:25 Download gff for
BO13508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15697887..15698460 | 14..587 | 99 | <- | Plus |
3L | 15699202..15699406 | 588..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:02 Download gff for
BO13508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15690987..15691560 | 14..587 | 99 | <- | Plus |
arm_3L | 15692302..15692506 | 588..793 | 99 | | Plus |
BO13508.complete Sequence
1063 bp assembled on 2006-10-11
GenBank Submission: FJ632799
> BO13508.complete
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGA
GAATCACCTGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGC
TGCTCCCAGCAACAACAGCAGCAGCAGCAACACATGCAGCAGCAACAGTA
ACAGCAGTAACAGCAGCAACAGCAACATCTGCAACATTGGCAGCTTCGCC
CACGTGCGAGTCGATTAAGCCAAACTTTGTGATGATGCCAATTGTGCCCA
GTTATGCGGAGGTATTCGGCAGCTCGTACAAAACCGTCGACGAGAAAAAG
AAATCGAAGTCAAAAGACAGCCAGTCGAAAGACGATATCAAGCGGGCAAG
CTTTCTAGACCAT
BO13508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1032 | CG7554-PA | 1..1029 | 17..1045 | 5130 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1516 | CG7554-RA | 189..1218 | 16..1045 | 5135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15697892..15698460 | 1045..477 | 2845 | 100 | Minus |
3L | 28110227 | 3L | 15699202..15699662 | 476..16 | 2290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:28:43 has no hits.
BO13508.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:23 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 1..1032 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:11 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 181..1222 | 10..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:42 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 190..1218 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:23 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 181..1222 | 10..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:49 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 190..1218 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:49 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15697890..15698460 | 477..1047 | 99 | <- | Minus |
3L | 15699202..15699661 | 17..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:42 Download gff for
BO13508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15690990..15691560 | 477..1047 | 99 | <- | Minus |
arm_3L | 15692302..15692761 | 17..476 | 99 | | Minus |
BO13508.pep Sequence
Translation from 16 to 1063
> BO13508.pep
MEELPRALNYELSHDLHFDHYAGAAAQKILNSGRSSPEASTPTITTLDAI
SSSDFLKQIGQQILSSIQLKHQHQLNEVSHPRNSTSEEIMDFDLANRVIL
DSSSVDQLQQQLEYDKFMNEVWIGIVFTLILISMVFCICSCFLYHQFRTW
KRNYRNNANGSTQCTIVDIEALKLHPDVEDPVPEYTLVSGLPSYEAALEL
LQKSPQSSCLIVYPSVFNVFNKQERSSQELQHPGVATSAPPAAPENHLAP
QTPSFCDATMPLLPATTAAAATHAAATVTAVTAATATSATLAASPTCESI
KPNFVMMPIVPSYAEVFGSSYKTVDEKKKSKSKDSQSKDDIKRASFLDH
BO13508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-PA | 343 | CG7554-PA | 1..343 | 1..343 | 1762 | 100 | Plus |
comm3-PE | 423 | CG42334-PE | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm3-PD | 423 | CG42334-PD | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm-PB | 370 | CG17943-PB | 117..364 | 101..300 | 165 | 25.3 | Plus |
comm-PA | 370 | CG17943-PA | 117..364 | 101..300 | 165 | 25.3 | Plus |