Clone Sequence Records
BO13510.3prime Sequence
848 bp (834 high quality bases) assembled on 2006-05-08
> BO13510.3prime
ATGGTCTAGAAAGCTTGCTTGATAGCTCTGGGTGATCTGTTGGATCCAGG
GCAGGTAGGCGGAGACCTTAACGTAGACGCCGGGAACGTTCACCTGACCA
CATCCAATGCCCCAGGACACCACTCCGACCACGTGCATGGCTCCATTCCG
GTCGCACACCAATGGGCCACCGCCATCACCCTTGCAGGCATCCTTGCCCT
CCTCTCCGCCGGCGCACACAAATCCGGGATTCAGTTTGTAGCTATAGCCC
AGACGCGTGTTCCTCAGCTGGGACTCGCACTGTTGGTGCGATAGGATTGG
CACATCCACCTCCTTCAGAATGTTCTGGTACTTTCCGTGCTCGCCGAAGG
CATCCTTGCCCCATCCAGTTGTCCAGCAACGAGCTCCAGTGAAATCGGAA
TACTTGTCGGGCAGACAGGCGGGACTAATGTGCGGATTCTTGGTGAAGTC
AACGGGTTGATCCAGTTTCAGAACGGCCAGATCATTGTCCAGAGTGCCGG
CATAGTACTCGGGATGGATGTGCACGGAAACCACATCGCGTTCAATGTAG
GGGAAGAACTCCACATCGTGGTTGACATCCCATTCGCCCAGACGCACACG
AAGATCGAAGCCATTTTGAGATTTAATGCAATGGGCAGCGGAAATGATGT
GCTGGGCATCGATGAGCGTGCCACCGCAGGCGTAGATCGACTCCTTGGGA
TCCTTCTTCAGAATGGCCACATGCCAGGGATACTCGCCGAACTCACTGTC
TCCATCAACGTAGACGGGATTCTTGATGCGACCGGTGATTCCAGCGGCGT
TCCTCACTCCACAACGACCAAATTGCTGGGGAGGAGCCTGGGGACGCA
BO13510.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-PA | 2676 | CG4998-RA | 1844..2673 | 848..19 | 4150 | 100 | Minus |
| CG4998-PB | 3558 | CG4998-RB | 2726..3555 | 848..19 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-RB | 4192 | CG4998-RB | 2880..3709 | 848..19 | 4150 | 100 | Minus |
| CG4998-RA | 3310 | CG4998-RA | 1998..2827 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16344158..16344758 | 619..19 | 3005 | 100 | Minus |
| 3L | 28110227 | 3L | 16343864..16344092 | 848..620 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:10:00 has no hits.
BO13510.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:17 Download gff for
BO13510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-PA | 1845..2676 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:40 Download gff for
BO13510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-PB | 2727..3558 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:20 Download gff for
BO13510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 1999..2827 | 19..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:42 Download gff for
BO13510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 1999..2827 | 19..847 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:42 Download gff for
BO13510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16343865..16344092 | 620..847 | 100 | -> | Minus |
| 3L | 16344158..16344758 | 19..619 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:20 Download gff for
BO13510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16336965..16337192 | 620..847 | 100 | -> | Minus |
| arm_3L | 16337258..16337858 | 19..619 | 100 | | Minus |
BO13510.5prime Sequence
855 bp (854 high quality bases) assembled on 2006-05-08
> BO13510.5prime
GAAGTTATCAGTCGACATGAGAATAAGAACTAGCCTTTTGGCAGTTGTAC
TGCTGGCCACCGCCTCCTTGGCCGAGGAATCCAACTGGGGAAATGAGTGG
GCGCCCATGGAGGATGCCATGCCCAGTCGCCGATCTGTCGATACCAAGCC
CGCCGAACAAGCTGACATTCAGGGACGTTACCTCGTCCACGAGTCCATCC
AGAGCAACAGCACCACCCAGATTGACGAGGTCATCGAGCAGCTGATCAAC
TCCCGCCGTGAGGGTCGTAATCTGGGGGAATACGATGCCGTCTATGCTGA
TGGCAATATCGATCAGGCTCTGCAGCAGGGAAACGATATGCAGGCCCGCA
ATCTTATCCGGGATAAGCTGTGTGGATTGGGACTGATGAGCTGCGATGTG
GAGGAGAAGCGTCCCTTCTACTCGACCATCTATGCCCAGGGTCCCCCACC
ACCATCTGGTTTCAGCGGTGGTCCCTATGGTCCGGCTAAGCCCATGCCCC
CACCAAGCTACTTCAGTGGTCGTCCACCAATGGGTGGACCTCCTGGATCT
TACGGACCTCCGCCAAGCTCCCTGAACTCCTTTGGACCTCCGCCCAGCTC
CGTGAACTCCTTTGGACCGCCAAGGAAGGTGGGATACGAGGGACCATACA
AGCCAATGTCTGGACCTTACAGGCCATCTGGACCCGGTGGCTACCTGGAG
CATCCTCCACCATCCGCCATTGACGGTTCATCCGACGGTATCACCTACAC
GAAGCCACCACCCGGAGCCCTGATCTATGACAGCAAGCCACCAGGACCCA
TCTACACCGGAGGTCCTTCTCTGGGAGCTGGACCCGTTTTTACTGGTGCT
TCGAA
BO13510.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-PA | 2676 | CG4998-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
| CG4998-PB | 3558 | CG4998-RB | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-RB | 4192 | CG4998-RB | 155..993 | 17..855 | 4195 | 100 | Plus |
| CG4998-RA | 3310 | CG4998-RA | 155..993 | 17..855 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16340444..16341282 | 17..855 | 4195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:39:33 has no hits.
BO13510.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:18 Download gff for
BO13510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:41 Download gff for
BO13510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-PB | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:35 Download gff for
BO13510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 150..993 | 8..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:18 Download gff for
BO13510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 150..993 | 8..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:18 Download gff for
BO13510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16340439..16341282 | 8..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:35 Download gff for
BO13510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16333539..16334382 | 8..855 | 99 | | Plus |
BO13510.complete Sequence
2707 bp assembled on 2008-08-14
GenBank Submission: FJ632800
> BO13510.complete
GAAGTTATCAGTCGACATGAGAATAAGAACTAGCCTTTTGGCAGTTGTAC
TGCTGGCCACCGCCTCCTTGGCCGAGGAATCCAACTGGGGAAATGAGTGG
GCGCCCATGGAGGATGCCATGCCCAGTCGCCGATCTGTCGATACCAAGCC
CGCCGAACAAGCTGACATTCAGGGACGTTACCTCGTCCACGAGTCCATCC
AGAGCAACAGCACCACCCAGATTGACGAGGTCATCGAGCAGCTGATCAAC
TCCCGCCGTGAGGGTCGTAATCTGGGGGAATACGATGCCGTCTATGCTGA
TGGCAATATCGATCAGGCTCTGCAGCAGGGAAACGATATGCAGGCCCGCA
ATCTTATCCGGGATAAGCTGTGTGGATTGGGACTGATGAGCTGCGATGTG
GAGGAGAAGCGTCCCTTCTACTCGACCATCTATGCCCAGGGTCCCCCACC
ACCATCTGGTTTCAGCGGTGGTCCCTATGGTCCGGCTAAGCCCATGCCCC
CACCAAGCTACTTCAGTGGTCGTCCACCAATGGGTGGACCTCCTGGATCT
TACGGACCTCCGCCAAGCTCCCTGAACTCCTTTGGACCTCCGCCCAGCTC
CGTGAACTCCTTTGGACCGCCAAGGAAGGTGGGATACGAGGGACCATACA
AGCCAATGTCTGGACCTTACAGGCCATCTGGACCCGGTGGCTACCTGGAG
CATCCTCCACCATCCGCCATTGACGGTTCATCCGACGGTATCACCTACAC
GAAGCCACCACCCGGAGCCCTGATCTATGACAGCAAGCCACCAGGACCCA
TCTACACCGGAGGTCCTTCTCTGGGAGCTGGACCCGTTTTTACTGGTGCT
TCGAATGGAGTTCCTCCATACAACTACGAGAACCCCGAGGGTGGCATCCA
GGGTGCAAGCTCTGCTCCCAATGGTTTCTACTCGCAGCAGTCTTCAGCTT
CTTCCGCCTCGGCCACATCCTCCAGCACCAAAGTGGTGGTTGGAGCACCG
CTCGATGGTCTGCAGCAACATGTGCATCATCATTATCACCATGTTGAAGG
TGGCGAGGGAGCAAAGGTTCCCAGTGTGCCAATTCCCATCGGAGCTGGCC
AGACCATTAACACCGACTTCAGTGCCCTGGCCCAATCATCTGCCACATAC
ACTCCCTCCATTCAGACTTCTTCCGGATCCAGTTACTCCCAGTCCAATGC
CTTCAATGCTGGCTTTAATGGTGCTTCTCAGGGTGGACTTCTTTCGCAGA
ACGGTTTTGGAATCTCCCAGAAACCCACTGGAGATCTGTACAAACCAAAC
TCTGGAGATCTCTACAAGCCCAACTCAGGACTAGGAAACTTTGGCAGCAG
TTCCTCTGGAGGATTCAGTGGATCGCCCAGCTCCAGTTATCACAGCCAGA
ATCCCGACTACTACAAGAAGGAGCTGCAAGGTGGAGCATCCAATCAGTAC
AATGGCATCTCTGGTGGTTACCAGGGTCAGGGTCAGTACCAGAGTGGATA
TGACACCTCGCGCCAGCAGATCGTCGACTGCCAGTGTGTGCCCATCTCCC
AGTGTCCCGCTGCCGATCGCATTGGACGCAAGGAGGATCTCATTCTGCCT
ATTGATCCCCGCAACCTGGGCAAGGACATTGAGGCTCTGAGTGACGATGC
TCTATCCAGCAATGCTACCACTACTGCTGAGGCTAAGAAGGACGAGGAGA
AGGCGGACAAGGATGACAAGAAGCGCACCCGCCGCCAGGCTGATCAAAAG
GATGACGAAGCAAGCGATCTCTCACTCGATGCTCAAGGGCGTGCCTATTA
TGGAAACCGACCCGTGGAAAAGACCTGCCGCATCAACGAAGTCTGCTGCC
GTCGTCCACTGCGTCCCCAGGCTCCTCCCCAGCAATTTGGTCGTTGTGGA
GTGAGGAACGCCGCTGGAATCACCGGTCGCATCAAGAATCCCGTCTACGT
TGATGGAGACAGTGAGTTCGGCGAGTATCCCTGGCATGTGGCCATTCTGA
AGAAGGATCCCAAGGAGTCGATCTACGCCTGCGGTGGCACGCTCATCGAT
GCCCAGCACATCATTTCCGCTGCCCATTGCATTAAATCTCAAAATGGCTT
CGATCTTCGTGTGCGTCTGGGCGAATGGGATGTCAACCACGATGTGGAGT
TCTTCCCCTACATTGAACGCGATGTGGTTTCCGTGCACATCCATCCCGAG
TACTATGCCGGCACTCTGGACAATGATCTGGCCGTTCTGAAACTGGATCA
ACCCGTTGACTTCACCAAGAATCCGCACATTAGTCCCGCCTGTCTGCCCG
ACAAGTATTCCGATTTCACTGGAGCTCGTTGCTGGACAACTGGATGGGGC
AAGGATGCCTTCGGCGAGCACGGAAAGTACCAGAACATTCTGAAGGAGGT
GGATGTGCCAATCCTATCGCACCAACAGTGCGAGTCCCAGCTGAGGAACA
CGCGTCTGGGCTATAGCTACAAACTGAATCCCGGATTTGTGTGCGCCGGC
GGAGAGGAGGGCAAGGATGCCTGCAAGGGTGATGGCGGTGGCCCATTGGT
GTGCGACCGGAATGGAGCCATGCACGTGGTCGGAGTGGTGTCCTGGGGCA
TTGGATGTGGTCAGGTGAACGTTCCCGGCGTCTACGTTAAGGTCTCCGCC
TACCTGCCCTGGATCCAACAGATCACCCAGAGCTATCAAGCAAGCTTTCT
AGACCAT
BO13510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-RA | 2676 | CG4998-PA | 1..2673 | 17..2689 | 13365 | 100 | Plus |
| CG4998-RB | 3558 | CG4998-PB | 1..1773 | 17..1789 | 8865 | 100 | Plus |
| CG4998-RB | 3558 | CG4998-PB | 2655..3555 | 1789..2689 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-RA | 3310 | CG4998-RA | 155..2827 | 17..2689 | 13365 | 100 | Plus |
| CG4998-RB | 4192 | CG4998-RB | 155..1927 | 17..1789 | 8865 | 100 | Plus |
| CG4998-RB | 4192 | CG4998-RB | 2809..3709 | 1789..2689 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16340444..16342216 | 17..1789 | 8865 | 100 | Plus |
| 3L | 28110227 | 3L | 16344158..16344758 | 2089..2689 | 3005 | 100 | Plus |
| 3L | 28110227 | 3L | 16343793..16344092 | 1789..2088 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:55 has no hits.
BO13510.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:38 Download gff for
BO13510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 154..2831 | 8..2689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:28 Download gff for
BO13510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 155..2827 | 17..2691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:05 Download gff for
BO13510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 159..2831 | 17..2691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:40 Download gff for
BO13510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4998-RA | 155..2827 | 17..2691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:40 Download gff for
BO13510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16340444..16342216 | 17..1789 | 100 | -> | Plus |
| 3L | 16343794..16344092 | 1790..2088 | 100 | -> | Plus |
| 3L | 16344158..16344758 | 2089..2691 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:28 Download gff for
BO13510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16333544..16335316 | 17..1789 | 100 | -> | Plus |
| arm_3L | 16336894..16337192 | 1790..2088 | 100 | -> | Plus |
| arm_3L | 16337258..16337858 | 2089..2691 | 99 | | Plus |
BO13510.pep Sequence
Translation from 16 to 2707
> BO13510.pep
MRIRTSLLAVVLLATASLAEESNWGNEWAPMEDAMPSRRSVDTKPAEQAD
IQGRYLVHESIQSNSTTQIDEVIEQLINSRREGRNLGEYDAVYADGNIDQ
ALQQGNDMQARNLIRDKLCGLGLMSCDVEEKRPFYSTIYAQGPPPPSGFS
GGPYGPAKPMPPPSYFSGRPPMGGPPGSYGPPPSSLNSFGPPPSSVNSFG
PPRKVGYEGPYKPMSGPYRPSGPGGYLEHPPPSAIDGSSDGITYTKPPPG
ALIYDSKPPGPIYTGGPSLGAGPVFTGASNGVPPYNYENPEGGIQGASSA
PNGFYSQQSSASSASATSSSTKVVVGAPLDGLQQHVHHHYHHVEGGEGAK
VPSVPIPIGAGQTINTDFSALAQSSATYTPSIQTSSGSSYSQSNAFNAGF
NGASQGGLLSQNGFGISQKPTGDLYKPNSGDLYKPNSGLGNFGSSSSGGF
SGSPSSSYHSQNPDYYKKELQGGASNQYNGISGGYQGQGQYQSGYDTSRQ
QIVDCQCVPISQCPAADRIGRKEDLILPIDPRNLGKDIEALSDDALSSNA
TTTAEAKKDEEKADKDDKKRTRRQADQKDDEASDLSLDAQGRAYYGNRPV
EKTCRINEVCCRRPLRPQAPPQQFGRCGVRNAAGITGRIKNPVYVDGDSE
FGEYPWHVAILKKDPKESIYACGGTLIDAQHIISAAHCIKSQNGFDLRVR
LGEWDVNHDVEFFPYIERDVVSVHIHPEYYAGTLDNDLAVLKLDQPVDFT
KNPHISPACLPDKYSDFTGARCWTTGWGKDAFGEHGKYQNILKEVDVPIL
SHQQCESQLRNTRLGYSYKLNPGFVCAGGEEGKDACKGDGGGPLVCDRNG
AMHVVGVVSWGIGCGQVNVPGVYVKVSAYLPWIQQITQSYQASFLDH
BO13510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4998-PA | 891 | CG4998-PA | 1..891 | 1..891 | 4809 | 100 | Plus |
| CG4998-PB | 1185 | CG4998-PB | 1..592 | 1..592 | 3147 | 100 | Plus |
| CG4998-PB | 1185 | CG4998-PB | 773..1185 | 450..891 | 1671 | 74 | Plus |
| CG5390-PB | 406 | CG5390-PB | 111..390 | 608..883 | 628 | 42.6 | Plus |
| CG5390-PA | 406 | CG5390-PA | 111..390 | 608..883 | 628 | 42.6 | Plus |
| CG13318-PA | 405 | CG13318-PA | 167..400 | 647..884 | 615 | 48.1 | Plus |
