Clone Sequence Records
BO13513.complete Sequence
1573 bp assembled on 2009-09-17
GenBank Submission: FJ632801
> BO13513.complete
GAAGTTATCAGTCGACATGGTCTCGCCATTGATAATTCTTTTAATTATTT
GGCTCTCCGTGGGCGCAAAGTCAGTGGAGATCGCCAGTATAAACCATCCC
TGTGCCTACGCCCACACGGTCAACATTACGGATGGACTGCGGATGAAGGA
TGGCTCCTACTCATACGCTGGAGTAGTGGTCCCACCGCATCTGATGGCGG
AGTACTCCTTCAAGGTGATCGATGGAGTGGAGTACCGGGCCAAGAAACAT
CTGCGCGGCTGCGTCTGTCTGCTGAAGCCCTGCATCAGTTTCTGTTGTCC
GGAGAACCTCGTCTTTGATGCCAAGCACTGGAACTGCACAATGCCACACC
AAGTCCGCGAGTCCACTCACGTGGAGCTCACCTACGCTAACAGGACTGTG
GATCAAGTACGCATACGCGATCGTTTTGTGGTGCGCACAGAGCTGGGTTG
CCGGAACAAATTCGTGGACAAAAAGCACGATAACTTCTGGCAATGGGACC
TCTTCGAGAATGGAACTCTGCGGCGGGACAATCGTCTGTGGTCAACGGAT
GAGTATTGCTTTAGCCCGTTGGAGCACAATCCGGAGCAGTGGGAGCTCAC
TCCGCTCAACTGCGAACGCTTTCAAACGGGGTACCGGGTTTGGATTTACG
CCATTTGCAGTATTATAGCCATCATTATAAACATTTTCATACTCTCCCTA
CTTGGATCTGTGAGAGATGCCCGTAAAAGCCACTATGGCCAGTTAATCAT
CTACTACTTGCTGTCCATGATCGTTGGTTACTCCCTGTTGGTCTACTTGG
CCTTGAAGAATCCCATGAAGCTCTCGCATGTGGCTTGCAGAAACATAGGA
TTTCTGGCCTACTTCTGCATCATGCTCTCCTTCGTCTTTCTGGCCATTTG
CAGTCTTGACTTTCTGCTCAAATTTAAACAAAAGGCTGTCAGGAGCTCCG
TCCGTCGATTGTCCCTTGCTCTGGCAGTTCTGGCGGTGATTGGTCTTCGG
TTTTTGGTCTCCTTAGCCCAGGACTCCAAGCTGCCCAAGCACTTCAAGCC
AGGCATGGGAGAAGATTACTGCTGGTTCGATGTTCGCACCTGGGGTATTT
TGATCTACTACTACGGACCCATTGCACTCCTCCTGATATTCAGCATTGTA
TGCTGTCTCAAGGCGTACTTTTCCATCTACGAACTGCCACCAGATACTCA
GTACATATTGGGCACTCAACTGAAAATCGTCAAGACGCATTTCTATGCCT
TTAGCGCTTACATAGTGGGCGTGTTTGCGGTCTGGATCCGAGAAATAGTC
GTGTATATAATGGCCAGAGTGAGAGAGCATTTCTTCATCATTGACTTCTG
GAGTGGAATTTGCATTCTGGGCCTGGCCATAGCTGGTTTTATTCTGCTCC
TTGGCAAGAATTTGCACGTCAAATCCTGGTGGGCCATTAATGTGGAATCA
AGTCAGACAGATCTGAGTATTATTAATGCTCGCGTATACAAGTTCGATGA
GAAAGGCGATCTAAAATCTTCAGACTCTCCCTACAAGCCGACAGTGACAT
CACTTGCAAGCTTTCTAGACCAT
BO13513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl9-RA | 1542 | CG17084-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl9-RA | 2133 | CG17084-RA | 373..1912 | 16..1555 | 7700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 331296..331937 | 657..16 | 3210 | 100 | Minus |
| 3L | 28110227 | 3L | 330756..330991 | 1082..847 | 1180 | 100 | Minus |
| 3L | 28110227 | 3L | 330277..330481 | 1444..1240 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 331048..331240 | 849..657 | 965 | 100 | Minus |
| 3L | 28110227 | 3L | 330541..330698 | 1239..1082 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 330136..330215 | 1523..1444 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:42:16 has no hits.
BO13513.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:25 Download gff for
BO13513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 371..1909 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:14 Download gff for
BO13513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 374..1912 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:23 Download gff for
BO13513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 371..1909 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:53 Download gff for
BO13513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 374..1912 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:53 Download gff for
BO13513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 330041..330074 | 1524..1557 | 94 | <- | Minus |
| 3L | 330136..330215 | 1444..1523 | 100 | <- | Minus |
| 3L | 330278..330481 | 1240..1443 | 100 | <- | Minus |
| 3L | 330541..330697 | 1083..1239 | 100 | <- | Minus |
| 3L | 330756..330989 | 849..1082 | 100 | <- | Minus |
| 3L | 331049..331240 | 657..848 | 100 | <- | Minus |
| 3L | 331297..331936 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:14 Download gff for
BO13513.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 330041..330074 | 1524..1557 | 94 | <- | Minus |
| arm_3L | 330136..330215 | 1444..1523 | 100 | <- | Minus |
| arm_3L | 330278..330481 | 1240..1443 | 100 | <- | Minus |
| arm_3L | 330541..330697 | 1083..1239 | 100 | <- | Minus |
| arm_3L | 330756..330989 | 849..1082 | 100 | <- | Minus |
| arm_3L | 331049..331240 | 657..848 | 100 | <- | Minus |
| arm_3L | 331297..331936 | 17..656 | 100 | | Minus |
BO13513.5prime Sequence
806 bp (804 high quality bases) assembled on 2006-05-08
> BO13513.5prime
GAAGTTATCAGTCGACATGGTCTCGCCATTGATAATTCTTTTAATTATTT
GGCTCTCCGTGGGCGCAAAGTCAGTGGAGATCGCCAGTATAAACCATCCC
TGTGCCTACGCCCACACGGTCAACATTACGGATGGACTGCGGATGAAGGA
TGGCTCCTACTCATACGCTGGAGTAGTGGTCCCACCGCATCTGATGGCGG
AGTACTCCTTCAAGGTGATCGATGGAGTGGAGTACCGGGCCAAGAAACAT
CTGCGCGGCTGCGTCTGTCTGCTGAAGCCCTGCATCAGTTTCTGTTGTCC
GGAGAACCTCGTCTTTGATGCCAAGCACTGGAACTGCACAATGCCACACC
AAGTCCGCGAGTCCACTCACGTGGAGCTCACCTACGCTAACAGGACTGTG
GATCAAGTACGCATACGCGATCGTTTTGTGGTGCGCACAGAGCTGGGTTG
CCGGAACAAATTCGTGGACAAAAAGCACGATAACTTCTGGCAATGGGACC
TCTTCGAGAATGGAACTCTGCGGCGGGACAATCGTCTGTGGTCAACGGAT
GAGTATTGCTTTAGCCCGTTGGAGCACAATCCGGAGCAGTGGGAGCTCAC
TCCGCTCAACTGCGAACGCTTTCAAACGGGGTACCGGGTTTGGATTTACG
CCATTTGCAGTATTATAGCCATCATTATAAACATTTTCATACTCTCCCTA
CTTGGATCTGTGAGAGATGCCCGTAAAAGCCACTATGGCCAGTTAATCAT
CTACTACTTGCTGTCCATGATCGTTGGTTACTCCCTGTTGGTCTACTTGG
CCTTGA
BO13513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17084-PA | 1542 | mthl9-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl9-RA | 2133 | CG17084-RA | 373..1163 | 16..806 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 331296..331937 | 657..16 | 3210 | 100 | Minus |
| 3L | 28110227 | 3L | 331091..331240 | 806..657 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:22:50 has no hits.
BO13513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:23 Download gff for
BO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:48 Download gff for
BO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17084-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:09 Download gff for
BO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 363..1162 | 7..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:11 Download gff for
BO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl9-RA | 363..1162 | 7..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:11 Download gff for
BO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 331092..331240 | 657..805 | 100 | <- | Minus |
| 3L | 331297..331947 | 7..656 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:09 Download gff for
BO13513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 331092..331240 | 657..805 | 100 | <- | Minus |
| arm_3L | 331297..331947 | 7..656 | 99 | | Minus |
BO13513.pep Sequence
Translation from 16 to 1573
> BO13513.pep
MVSPLIILLIIWLSVGAKSVEIASINHPCAYAHTVNITDGLRMKDGSYSY
AGVVVPPHLMAEYSFKVIDGVEYRAKKHLRGCVCLLKPCISFCCPENLVF
DAKHWNCTMPHQVRESTHVELTYANRTVDQVRIRDRFVVRTELGCRNKFV
DKKHDNFWQWDLFENGTLRRDNRLWSTDEYCFSPLEHNPEQWELTPLNCE
RFQTGYRVWIYAICSIIAIIINIFILSLLGSVRDARKSHYGQLIIYYLLS
MIVGYSLLVYLALKNPMKLSHVACRNIGFLAYFCIMLSFVFLAICSLDFL
LKFKQKAVRSSVRRLSLALAVLAVIGLRFLVSLAQDSKLPKHFKPGMGED
YCWFDVRTWGILIYYYGPIALLLIFSIVCCLKAYFSIYELPPDTQYILGT
QLKIVKTHFYAFSAYIVGVFAVWIREIVVYIMARVREHFFIIDFWSGICI
LGLAIAGFILLLGKNLHVKSWWAINVESSQTDLSIINARVYKFDEKGDLK
SSDSPYKPTVTSLASFLDH
BO13513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl9-PA | 513 | CG17084-PA | 1..513 | 1..513 | 2726 | 100 | Plus |
| mthl8-PB | 492 | CG32475-PB | 27..471 | 26..471 | 580 | 30.2 | Plus |
| mthl8-PA | 492 | CG32475-PA | 27..471 | 26..471 | 580 | 30.2 | Plus |
| mthl10-PD | 557 | CG17061-PD | 53..506 | 26..462 | 439 | 27.1 | Plus |
| mthl10-PG | 575 | CG17061-PG | 53..506 | 26..462 | 439 | 27.1 | Plus |
