Clone BO13514 Report

Search the DGRC for BO13514

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Eg-RA
Protein status:BO13514.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO13514.3prime Sequence

686 bp (685 high quality bases) assembled on 2006-05-08

> BO13514.3prime
ATGGTCTAGAAAGCTTGCTTTCTGATAGTACTTCGAGCGTCGCCAGCGGT
TCACGATGCTATTGGCCAGGACATAGGCCAACAGGGCGCAAATCAGCTCC
ACACCCAATAGCACCAGGGAAACCAGATTAAATGTCGTCCAACGATCGGC
GATAAAGTCCAGGAACTTTTGCCGGCATCCTTCAAGATTCAGTTTGTCAC
TCTCGCCGTTGTAGCAACTATTCGGGGGCAGAATGTAGTCCGAGGGCCCC
ACATTGCCGCAGCAATCCAACCATCGCTCGAGGCTGGCAATCTGACTCTG
GTTGCCAGGCTTGATTGGCACCGGCTGGTCATTCCACAGTTTATCAAACG
TTTTGTCCACGTTAATCAGCAGCGAGGTTTGGAAAACCCACAGGAACCCA
ACTGCTAGAACTTCCAGTATGACCAAGACAATCAGAATAACAACGAACAC
CTTAGATGTGGCACTGCTCTCCCGCGCTGCTCCCAGAGCCCCGAAAAGGG
CGGTCAGAACGACGACCACGCCCACCGCGATGATGACGAAGGCGGCCGTG
TTGAAGTGCTCGAATTTGTAGATGATGTGCACACCAAGGCCGATAACAAC
CAGGCCGAACAGAGCGAGGATAATATCCCAAAAGAGGGCAAAGCCCTTCA
AAACGTTTGTGGAGCAGGCCATGTCGACTGATAACT

BO13514.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12142-PA 657 Tsp42Eg-RA 1..654 672..19 3245 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 1188 CG12142-RA 189..842 672..19 3255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7032326..7032503 448..271 875 99.4 Minus
2R 25286936 2R 7032571..7032745 271..97 875 100 Minus
2R 25286936 2R 7031748..7031912 612..448 825 100 Minus
2R 25286936 2R 7032808..7032887 98..19 400 100 Minus
2R 25286936 2R 7029099..7029158 672..613 300 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:08:06 has no hits.

BO13514.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:24 Download gff for BO13514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12142-PA 1..657 18..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:49 Download gff for BO13514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12142-PA 1..657 18..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:42 Download gff for BO13514.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 11..672 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:59 Download gff for BO13514.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 11..672 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:59 Download gff for BO13514.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7031748..7031912 448..612 100 -> Minus
2R 7032327..7032503 271..447 99 -> Minus
2R 7032572..7032745 97..270 100 -> Minus
2R 7032810..7032893 11..96 95   Minus
2R 7029099..7029158 613..672 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:42 Download gff for BO13514.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2916604..2916663 613..672 100 -> Minus
arm_2R 2919253..2919417 448..612 100 -> Minus
arm_2R 2919832..2920008 271..447 99 -> Minus
arm_2R 2920077..2920250 97..270 100 -> Minus
arm_2R 2920315..2920398 11..96 95   Minus

BO13514.5prime Sequence

686 bp (685 high quality bases) assembled on 2006-05-08

> BO13514.5prime
GAAGTTATCAGTCGACATGGCCTGCTCCACAAACGTTTTGAAGGGCTTTG
CCCTCTTTTGGGATATTATCCTCGCTCTGTTCGGCCTGGTTGTTATCGGC
CTTGGTGTGCACATCATCTACAAATTCGAGCACTTCAACACGGCCGCCTT
CGTCATCATCGCGGTGGGCGTGGTCGTCGTTCTGACCGCCCTTTTCGGGG
CTCTGGGAGCAGCGCGGGAGAGCAGTGCCACATCTAAGGTGTTCGTTGTT
ATTCTGATTGTCTTGGTCATACTGGAAGTTCTAGCAGTTGGGTTCCTGTG
GGTTTTCCAAACCTCGCTGCTGATTAACGTGGACAAAACGTTTGATAAAC
TGTGGAATGACCAGCCGGTGCCAATCAAGCCTGGCAACCAGAGTCAGATT
GCCAGCCTCGAGCGATGGTTGGATTGCTGCGGCAATGTGGGGCCCTCGGA
CTACATTCTGCCCCCGAATAGTTGCTACAACGGCGAGAGTGACAAACTGA
ATCTTGAAGGATGCCGGCAAAAGTTCCTGGACTTTATCGCCGATCGTTGG
ACGACATTTAATCTGGTTTCCCTGGTGCTATTGGGTGTGGAGCTGATTTG
CGCCCTGTTGGCCTATGTCCTGGCCAATAGCATCGTGAACCGCTGGCGAC
GCTCGAAGTACTATCAGAAAGCAAGCTTTCTAGACC

BO13514.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12142-PA 657 Tsp42Eg-RA 1..654 17..670 3245 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 1188 CG12142-RA 189..842 17..670 3255 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7032326..7032503 241..418 875 99.4 Plus
2R 25286936 2R 7032571..7032745 418..592 875 100 Plus
2R 25286936 2R 7031748..7031912 77..241 825 100 Plus
2R 25286936 2R 7032808..7032887 591..670 400 100 Plus
2R 25286936 2R 7029099..7029158 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:49:57 has no hits.

BO13514.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:25 Download gff for BO13514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12142-PA 1..657 17..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:50 Download gff for BO13514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12142-PA 1..657 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:29 Download gff for BO13514.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 17..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:44 Download gff for BO13514.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..848 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:44 Download gff for BO13514.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7029099..7029158 17..76 100 -> Plus
2R 7031748..7031912 77..241 100 -> Plus
2R 7032327..7032503 242..418 99 -> Plus
2R 7032572..7032745 419..592 100 -> Plus
2R 7032810..7032893 593..678 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:29 Download gff for BO13514.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2916604..2916663 17..76 100 -> Plus
arm_2R 2919253..2919417 77..241 100 -> Plus
arm_2R 2919832..2920008 242..418 99 -> Plus
arm_2R 2920077..2920250 419..592 100 -> Plus
arm_2R 2920315..2920398 593..678 95   Plus

BO13514.complete Sequence

688 bp assembled on 2006-10-11

GenBank Submission: FJ632802

> BO13514.complete
GAAGTTATCAGTCGACATGGCCTGCTCCACAAACGTTTTGAAGGGCTTTG
CCCTCTTTTGGGATATTATCCTCGCTCTGTTCGGCCTGGTTGTTATCGGC
CTTGGTGTGCACATCATCTACAAATTCGAGCACTTCAACACGGCCGCCTT
CGTCATCATCGCGGTGGGCGTGGTCGTCGTTCTGACCGCCCTTTTCGGGG
CTCTGGGAGCAGCGCGGGAGAGCAGTGCCACATCTAAGGTGTTCGTTGTT
ATTCTGATTGTCTTGGTCATACTGGAAGTTCTAGCAGTTGGGTTCCTGTG
GGTTTTCCAAACCTCGCTGCTGATTAACGTGGACAAAACGTTTGATAAAC
TGTGGAATGACCAGCCGGTGCCAATCAAGCCTGGCAACCAGAGTCAGATT
GCCAGCCTCGAGCGATGGTTGGATTGCTGCGGCAATGTGGGGCCCTCGGA
CTACATTCTGCCCCCGAATAGTTGCTACAACGGCGAGAGTGACAAACTGA
ATCTTGAAGGATGCCGGCAAAAGTTCCTGGACTTTATCGCCGATCGTTGG
ACGACATTTAATCTGGTTTCCCTGGTGCTATTGGGTGTGGAGCTGATTTG
CGCCCTGTTGGCCTATGTCCTGGCCAATAGCATCGTGAACCGCTGGCGAC
GCTCGAAGTACTATCAGAAAGCAAGCTTTCTAGACCAT

BO13514.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 657 CG12142-PA 1..654 17..670 3255 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-RA 1188 CG12142-RA 189..842 17..670 3255 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7032326..7032503 241..418 875 99.4 Plus
2R 25286936 2R 7032571..7032745 418..592 875 100 Plus
2R 25286936 2R 7031748..7031912 77..241 825 100 Plus
2R 25286936 2R 7032808..7032887 591..670 400 100 Plus
2R 25286936 2R 7029099..7029158 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:49:21 has no hits.

BO13514.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:45 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 1..657 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:02 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 187..846 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:51 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..842 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:45 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 187..846 17..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:44 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eg-RA 189..842 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:44 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7029099..7029158 17..76 100 -> Plus
2R 7031748..7031912 77..241 100 -> Plus
2R 7032327..7032503 242..418 99 -> Plus
2R 7032572..7032745 419..592 100 -> Plus
2R 7032810..7032887 593..672 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:51 Download gff for BO13514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2916604..2916663 17..76 100 -> Plus
arm_2R 2919253..2919417 77..241 100 -> Plus
arm_2R 2919832..2920008 242..418 99 -> Plus
arm_2R 2920077..2920250 419..592 100 -> Plus
arm_2R 2920315..2920392 593..672 97   Plus

BO13514.pep Sequence

Translation from 16 to 688

> BO13514.pep
MACSTNVLKGFALFWDIILALFGLVVIGLGVHIIYKFEHFNTAAFVIIAV
GVVVVLTALFGALGAARESSATSKVFVVILIVLVILEVLAVGFLWVFQTS
LLINVDKTFDKLWNDQPVPIKPGNQSQIASLERWLDCCGNVGPSDYILPP
NSCYNGESDKLNLEGCRQKFLDFIADRWTTFNLVSLVLLGVELICALLAY
VLANSIVNRWRRSKYYQKASFLDH

BO13514.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eg-PA 218 CG12142-PA 1..218 1..218 1125 100 Plus
Tsp42Ef-PA 220 CG12845-PA 3..220 4..215 240 27.8 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..215 215 24.7 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..215 215 24.7 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..215 215 24.7 Plus