Clone Sequence Records
BO13514.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-08
> BO13514.3prime
ATGGTCTAGAAAGCTTGCTTTCTGATAGTACTTCGAGCGTCGCCAGCGGT
TCACGATGCTATTGGCCAGGACATAGGCCAACAGGGCGCAAATCAGCTCC
ACACCCAATAGCACCAGGGAAACCAGATTAAATGTCGTCCAACGATCGGC
GATAAAGTCCAGGAACTTTTGCCGGCATCCTTCAAGATTCAGTTTGTCAC
TCTCGCCGTTGTAGCAACTATTCGGGGGCAGAATGTAGTCCGAGGGCCCC
ACATTGCCGCAGCAATCCAACCATCGCTCGAGGCTGGCAATCTGACTCTG
GTTGCCAGGCTTGATTGGCACCGGCTGGTCATTCCACAGTTTATCAAACG
TTTTGTCCACGTTAATCAGCAGCGAGGTTTGGAAAACCCACAGGAACCCA
ACTGCTAGAACTTCCAGTATGACCAAGACAATCAGAATAACAACGAACAC
CTTAGATGTGGCACTGCTCTCCCGCGCTGCTCCCAGAGCCCCGAAAAGGG
CGGTCAGAACGACGACCACGCCCACCGCGATGATGACGAAGGCGGCCGTG
TTGAAGTGCTCGAATTTGTAGATGATGTGCACACCAAGGCCGATAACAAC
CAGGCCGAACAGAGCGAGGATAATATCCCAAAAGAGGGCAAAGCCCTTCA
AAACGTTTGTGGAGCAGGCCATGTCGACTGATAACT
BO13514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12142-PA | 657 | Tsp42Eg-RA | 1..654 | 672..19 | 3245 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eg-RA | 1188 | CG12142-RA | 189..842 | 672..19 | 3255 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7032326..7032503 | 448..271 | 875 | 99.4 | Minus |
2R | 25286936 | 2R | 7032571..7032745 | 271..97 | 875 | 100 | Minus |
2R | 25286936 | 2R | 7031748..7031912 | 612..448 | 825 | 100 | Minus |
2R | 25286936 | 2R | 7032808..7032887 | 98..19 | 400 | 100 | Minus |
2R | 25286936 | 2R | 7029099..7029158 | 672..613 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:08:06 has no hits.
BO13514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:24 Download gff for
BO13514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12142-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:49 Download gff for
BO13514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12142-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:59:42 Download gff for
BO13514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 189..848 | 11..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:59 Download gff for
BO13514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 189..848 | 11..672 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:59 Download gff for
BO13514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7031748..7031912 | 448..612 | 100 | -> | Minus |
2R | 7032327..7032503 | 271..447 | 99 | -> | Minus |
2R | 7032572..7032745 | 97..270 | 100 | -> | Minus |
2R | 7032810..7032893 | 11..96 | 95 | | Minus |
2R | 7029099..7029158 | 613..672 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:59:42 Download gff for
BO13514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2916604..2916663 | 613..672 | 100 | -> | Minus |
arm_2R | 2919253..2919417 | 448..612 | 100 | -> | Minus |
arm_2R | 2919832..2920008 | 271..447 | 99 | -> | Minus |
arm_2R | 2920077..2920250 | 97..270 | 100 | -> | Minus |
arm_2R | 2920315..2920398 | 11..96 | 95 | | Minus |
BO13514.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-08
> BO13514.5prime
GAAGTTATCAGTCGACATGGCCTGCTCCACAAACGTTTTGAAGGGCTTTG
CCCTCTTTTGGGATATTATCCTCGCTCTGTTCGGCCTGGTTGTTATCGGC
CTTGGTGTGCACATCATCTACAAATTCGAGCACTTCAACACGGCCGCCTT
CGTCATCATCGCGGTGGGCGTGGTCGTCGTTCTGACCGCCCTTTTCGGGG
CTCTGGGAGCAGCGCGGGAGAGCAGTGCCACATCTAAGGTGTTCGTTGTT
ATTCTGATTGTCTTGGTCATACTGGAAGTTCTAGCAGTTGGGTTCCTGTG
GGTTTTCCAAACCTCGCTGCTGATTAACGTGGACAAAACGTTTGATAAAC
TGTGGAATGACCAGCCGGTGCCAATCAAGCCTGGCAACCAGAGTCAGATT
GCCAGCCTCGAGCGATGGTTGGATTGCTGCGGCAATGTGGGGCCCTCGGA
CTACATTCTGCCCCCGAATAGTTGCTACAACGGCGAGAGTGACAAACTGA
ATCTTGAAGGATGCCGGCAAAAGTTCCTGGACTTTATCGCCGATCGTTGG
ACGACATTTAATCTGGTTTCCCTGGTGCTATTGGGTGTGGAGCTGATTTG
CGCCCTGTTGGCCTATGTCCTGGCCAATAGCATCGTGAACCGCTGGCGAC
GCTCGAAGTACTATCAGAAAGCAAGCTTTCTAGACC
BO13514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12142-PA | 657 | Tsp42Eg-RA | 1..654 | 17..670 | 3245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eg-RA | 1188 | CG12142-RA | 189..842 | 17..670 | 3255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7032326..7032503 | 241..418 | 875 | 99.4 | Plus |
2R | 25286936 | 2R | 7032571..7032745 | 418..592 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7031748..7031912 | 77..241 | 825 | 100 | Plus |
2R | 25286936 | 2R | 7032808..7032887 | 591..670 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7029099..7029158 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:49:57 has no hits.
BO13514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:25 Download gff for
BO13514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12142-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:50 Download gff for
BO13514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12142-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:29 Download gff for
BO13514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 189..848 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:58:44 Download gff for
BO13514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 189..848 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:58:44 Download gff for
BO13514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7029099..7029158 | 17..76 | 100 | -> | Plus |
2R | 7031748..7031912 | 77..241 | 100 | -> | Plus |
2R | 7032327..7032503 | 242..418 | 99 | -> | Plus |
2R | 7032572..7032745 | 419..592 | 100 | -> | Plus |
2R | 7032810..7032893 | 593..678 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:29 Download gff for
BO13514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2916604..2916663 | 17..76 | 100 | -> | Plus |
arm_2R | 2919253..2919417 | 77..241 | 100 | -> | Plus |
arm_2R | 2919832..2920008 | 242..418 | 99 | -> | Plus |
arm_2R | 2920077..2920250 | 419..592 | 100 | -> | Plus |
arm_2R | 2920315..2920398 | 593..678 | 95 | | Plus |
BO13514.complete Sequence
688 bp assembled on 2006-10-11
GenBank Submission: FJ632802
> BO13514.complete
GAAGTTATCAGTCGACATGGCCTGCTCCACAAACGTTTTGAAGGGCTTTG
CCCTCTTTTGGGATATTATCCTCGCTCTGTTCGGCCTGGTTGTTATCGGC
CTTGGTGTGCACATCATCTACAAATTCGAGCACTTCAACACGGCCGCCTT
CGTCATCATCGCGGTGGGCGTGGTCGTCGTTCTGACCGCCCTTTTCGGGG
CTCTGGGAGCAGCGCGGGAGAGCAGTGCCACATCTAAGGTGTTCGTTGTT
ATTCTGATTGTCTTGGTCATACTGGAAGTTCTAGCAGTTGGGTTCCTGTG
GGTTTTCCAAACCTCGCTGCTGATTAACGTGGACAAAACGTTTGATAAAC
TGTGGAATGACCAGCCGGTGCCAATCAAGCCTGGCAACCAGAGTCAGATT
GCCAGCCTCGAGCGATGGTTGGATTGCTGCGGCAATGTGGGGCCCTCGGA
CTACATTCTGCCCCCGAATAGTTGCTACAACGGCGAGAGTGACAAACTGA
ATCTTGAAGGATGCCGGCAAAAGTTCCTGGACTTTATCGCCGATCGTTGG
ACGACATTTAATCTGGTTTCCCTGGTGCTATTGGGTGTGGAGCTGATTTG
CGCCCTGTTGGCCTATGTCCTGGCCAATAGCATCGTGAACCGCTGGCGAC
GCTCGAAGTACTATCAGAAAGCAAGCTTTCTAGACCAT
BO13514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eg-RA | 657 | CG12142-PA | 1..654 | 17..670 | 3255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eg-RA | 1188 | CG12142-RA | 189..842 | 17..670 | 3255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7032326..7032503 | 241..418 | 875 | 99.4 | Plus |
2R | 25286936 | 2R | 7032571..7032745 | 418..592 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7031748..7031912 | 77..241 | 825 | 100 | Plus |
2R | 25286936 | 2R | 7032808..7032887 | 591..670 | 400 | 100 | Plus |
2R | 25286936 | 2R | 7029099..7029158 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:21 has no hits.
BO13514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:45 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:02 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 187..846 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:51 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 189..842 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:45 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 187..846 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:44 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eg-RA | 189..842 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:44 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7029099..7029158 | 17..76 | 100 | -> | Plus |
2R | 7031748..7031912 | 77..241 | 100 | -> | Plus |
2R | 7032327..7032503 | 242..418 | 99 | -> | Plus |
2R | 7032572..7032745 | 419..592 | 100 | -> | Plus |
2R | 7032810..7032887 | 593..672 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:51 Download gff for
BO13514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2916604..2916663 | 17..76 | 100 | -> | Plus |
arm_2R | 2919253..2919417 | 77..241 | 100 | -> | Plus |
arm_2R | 2919832..2920008 | 242..418 | 99 | -> | Plus |
arm_2R | 2920077..2920250 | 419..592 | 100 | -> | Plus |
arm_2R | 2920315..2920392 | 593..672 | 97 | | Plus |
BO13514.pep Sequence
Translation from 16 to 688
> BO13514.pep
MACSTNVLKGFALFWDIILALFGLVVIGLGVHIIYKFEHFNTAAFVIIAV
GVVVVLTALFGALGAARESSATSKVFVVILIVLVILEVLAVGFLWVFQTS
LLINVDKTFDKLWNDQPVPIKPGNQSQIASLERWLDCCGNVGPSDYILPP
NSCYNGESDKLNLEGCRQKFLDFIADRWTTFNLVSLVLLGVELICALLAY
VLANSIVNRWRRSKYYQKASFLDH
BO13514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Eg-PA | 218 | CG12142-PA | 1..218 | 1..218 | 1125 | 100 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 3..220 | 4..215 | 240 | 27.8 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..215 | 215 | 24.7 | Plus |