Clone Sequence Records
BO13516.3prime Sequence
819 bp (728 high quality bases) assembled on 2006-05-08
> BO13516.3prime
ATGGTCTAGAAAGCTTGCGTGGCGGAACTTGCTGGGATTGGGGCGGGCTC
GGCGGACGGCGGACTCCGGAGAGCCGTATGCGATGGCGTGGCTGGTAGCA
GATCCGCCCTCGCCGGTGCTGAAAGAGTTGGCAATGGCAATGGCGCCGCC
GTTGGTGCCTCCGAAATCGATTGGGAAAAAGGTGCCAGCGGGCAGAGGGG
CGGCGGGCTTCTTGGAGGGCTTGCCGGCAGGAGAAGCAGCCTTCACAGGC
TTCTTGTCTGCGGGACGACGGGCGTTGGGCACGCGCACAGGGTTAATGGG
TTTTACGGGCACGGACAGCTCCTCCTCGTCCTCCTCAACGTCGTCGGCCA
CAGCGTTCTCTACTTCCTCCTCGTCTTCAATGGCGGCGGCCTGGGGCTCC
TCCTCCTCCTGATCCAGCTCGACGATCACCTTCTTCTTGGCGGGCAGGTA
GCGGTTCGCTGGCACCACGGCGGCCACTGGAGCAATGGGAGCGGGGGCTG
GAAGCTCGGCCTCGGCAACGGGCAGGGGAACTGATTCCTCCTCAGCAGCA
GAGCCGACGGAGGCTTCCTCGGCGGCGAAGTTGAAGTCTCGTGGAACCTT
AGCGGCGTCGTCTGCGGCCTCGGGCTCGGGTTCAGCCTCTGACTCGGCTT
GGGGTGCTACGTCGGAATTGGTGGCCACCTGTACAACTGGCGCTTGGTCG
GGATAAGCCTCGGCCACGGAGGTTGCGCCGTGGGCTCCGGCGGCTGCGAG
GACATCGTCAGCTGGGACTCCCTCGGCGCTAGTATCAGACTCTGCGTGAT
TGCAATCCTTCAGGTAGGT
BO13516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-PA | 1041 | CG11370-RA | 238..1038 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1323 | CG11370-RA | 388..1188 | 819..19 | 4005 | 100 | Minus |
CG11370-RB | 1308 | CG11370-RB | 400..1173 | 792..19 | 3870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22712737..22713525 | 807..19 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:09:54 has no hits.
BO13516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:28 Download gff for
BO13516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-PA | 238..1041 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:54 Download gff for
BO13516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-PA | 238..1041 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:19 Download gff for
BO13516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 388..1196 | 10..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:33 Download gff for
BO13516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 388..1196 | 10..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:33 Download gff for
BO13516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22712726..22713533 | 10..819 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:19 Download gff for
BO13516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22705826..22706633 | 10..819 | 98 | | Minus |
BO13516.5prime Sequence
799 bp (738 high quality bases) assembled on 2006-05-08
> BO13516.5prime
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGAC
GAGGAGGAAGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGA
GGAGCTGTCCGTGCCCGTAAAACCCATTACCCCTGTGCGCGTGCCCAAC
BO13516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-PA | 1041 | CG11370-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1323 | CG11370-RA | 141..933 | 8..799 | 3925 | 99.7 | Plus |
CG11370-RB | 1308 | CG11370-RB | 141..918 | 8..799 | 3690 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22712737..22713270 | 266..799 | 2655 | 99.8 | Plus |
3L | 28110227 | 3L | 22712502..22712672 | 96..266 | 855 | 100 | Plus |
3L | 28110227 | 3L | 22712301..22712384 | 13..96 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:20:13 has no hits.
BO13516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:29 Download gff for
BO13516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:56 Download gff for
BO13516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:41 Download gff for
BO13516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 136..933 | 1..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:04 Download gff for
BO13516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 136..933 | 1..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:04 Download gff for
BO13516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22712290..22712383 | 1..95 | 95 | -> | Plus |
3L | 22712502..22712672 | 96..266 | 100 | -> | Plus |
3L | 22712738..22713270 | 267..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:41 Download gff for
BO13516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22705602..22705772 | 96..266 | 100 | -> | Plus |
arm_3L | 22705390..22705483 | 1..95 | 95 | -> | Plus |
arm_3L | 22705838..22706370 | 267..799 | 99 | | Plus |
BO13516.complete Sequence
1072 bp assembled on 2006-10-11
GenBank Submission: FJ632803
> BO13516.complete
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGAC
GAGGAGGAAGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGA
GGAGCTGTCCGTGCCCGTAAAACCCATTAACCCTGTGCGCGTGCCCAACG
CCCGTCGTCCCGCAGACAAGAAGCCTGTGAAGGCTGCTTCTCCTGCCGGC
AAGCCCTCCAAGAAGCCCGCCGCCCCTCTGCCCGCTGGCACCTTTTTCCC
AATCGATTTCGGAGGCACCAACGGCGGCGCCATTGCCATTGCCAACTCTT
TCAGCACCGGCGAGGGCGGATCTGCTACCAGCCACGCCATCGCATACGGC
TCTCCGGAGTCCGCCGTCCGCCGAGCCCGCCCCAATCCCAGCAAGTTCCG
CCACGCAAGCTTTCTAGACCAT
BO13516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1041 | CG11370-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
CG11370-RB | 1026 | CG11370-PB | 1..1023 | 17..1054 | 4930 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1323 | CG11370-RA | 147..1188 | 13..1054 | 5210 | 100 | Plus |
CG11370-RB | 1308 | CG11370-RB | 147..1173 | 13..1054 | 4950 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22712737..22713525 | 266..1054 | 3945 | 100 | Plus |
3L | 28110227 | 3L | 22712502..22712672 | 96..266 | 855 | 100 | Plus |
3L | 28110227 | 3L | 22712301..22712384 | 13..96 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:13 has no hits.
BO13516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:24 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 1..1041 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:45 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 134..1194 | 1..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:14 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 151..1188 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:24 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 134..1194 | 1..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:51 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 151..1188 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:51 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22712305..22712383 | 17..95 | 100 | -> | Plus |
3L | 22712502..22712672 | 96..266 | 100 | -> | Plus |
3L | 22712738..22713525 | 267..1056 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:14 Download gff for
BO13516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22705405..22705483 | 17..95 | 100 | -> | Plus |
arm_3L | 22705602..22705772 | 96..266 | 100 | -> | Plus |
arm_3L | 22705838..22706625 | 267..1056 | 99 | | Plus |
BO13516.pep Sequence
Translation from 16 to 1072
> BO13516.pep
MKFCAAVALLLIAGIVASGDALPARKRMVYLQQPAAAEWYGSAPHQRFMY
MQYVQPGRTHARSTQAASALVAGETVATGTYLKDCNHAESDTSAEGVPAD
DVLAAAGAHGATSVAEAYPDQAPVVQVATNSDVAPQAESEAEPEPEAADD
AAKVPRDFNFAAEEASVGSAAEEESVPLPVAEAELPAPAPIAPVAAVVPA
NRYLPAKKKVIVELDQEEEEPQAAAIEDEEEVENAVADDVEEDEEELSVP
VKPINPVRVPNARRPADKKPVKAASPAGKPSKKPAAPLPAGTFFPIDFGG
TNGGAIAIANSFSTGEGGSATSHAIAYGSPESAVRRARPNPSKFRHASFL
DH
BO13516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-PA | 346 | CG11370-PA | 1..346 | 1..346 | 1756 | 100 | Plus |
CG11370-PB | 341 | CG11370-PB | 1..341 | 1..346 | 1707 | 98.6 | Plus |