Clone BO13516 Report

Search the DGRC for BO13516

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG11370-RA
Protein status:BO13516.pep: validated full length
Sequenced Size:1072

Clone Sequence Records

BO13516.3prime Sequence

819 bp (728 high quality bases) assembled on 2006-05-08

> BO13516.3prime
ATGGTCTAGAAAGCTTGCGTGGCGGAACTTGCTGGGATTGGGGCGGGCTC
GGCGGACGGCGGACTCCGGAGAGCCGTATGCGATGGCGTGGCTGGTAGCA
GATCCGCCCTCGCCGGTGCTGAAAGAGTTGGCAATGGCAATGGCGCCGCC
GTTGGTGCCTCCGAAATCGATTGGGAAAAAGGTGCCAGCGGGCAGAGGGG
CGGCGGGCTTCTTGGAGGGCTTGCCGGCAGGAGAAGCAGCCTTCACAGGC
TTCTTGTCTGCGGGACGACGGGCGTTGGGCACGCGCACAGGGTTAATGGG
TTTTACGGGCACGGACAGCTCCTCCTCGTCCTCCTCAACGTCGTCGGCCA
CAGCGTTCTCTACTTCCTCCTCGTCTTCAATGGCGGCGGCCTGGGGCTCC
TCCTCCTCCTGATCCAGCTCGACGATCACCTTCTTCTTGGCGGGCAGGTA
GCGGTTCGCTGGCACCACGGCGGCCACTGGAGCAATGGGAGCGGGGGCTG
GAAGCTCGGCCTCGGCAACGGGCAGGGGAACTGATTCCTCCTCAGCAGCA
GAGCCGACGGAGGCTTCCTCGGCGGCGAAGTTGAAGTCTCGTGGAACCTT
AGCGGCGTCGTCTGCGGCCTCGGGCTCGGGTTCAGCCTCTGACTCGGCTT
GGGGTGCTACGTCGGAATTGGTGGCCACCTGTACAACTGGCGCTTGGTCG
GGATAAGCCTCGGCCACGGAGGTTGCGCCGTGGGCTCCGGCGGCTGCGAG
GACATCGTCAGCTGGGACTCCCTCGGCGCTAGTATCAGACTCTGCGTGAT
TGCAATCCTTCAGGTAGGT

BO13516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-PA 1041 CG11370-RA 238..1038 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1323 CG11370-RA 388..1188 819..19 4005 100 Minus
CG11370-RB 1308 CG11370-RB 400..1173 792..19 3870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22712737..22713525 807..19 3945 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:09:54 has no hits.

BO13516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:28 Download gff for BO13516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-PA 238..1041 15..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:54 Download gff for BO13516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-PA 238..1041 15..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:19 Download gff for BO13516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 388..1196 10..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:33 Download gff for BO13516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 388..1196 10..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:33 Download gff for BO13516.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22712726..22713533 10..819 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:19 Download gff for BO13516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22705826..22706633 10..819 98   Minus

BO13516.5prime Sequence

799 bp (738 high quality bases) assembled on 2006-05-08

> BO13516.5prime
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGAC
GAGGAGGAAGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGA
GGAGCTGTCCGTGCCCGTAAAACCCATTACCCCTGTGCGCGTGCCCAAC

BO13516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-PA 1041 CG11370-RA 1..783 17..799 3890 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1323 CG11370-RA 141..933 8..799 3925 99.7 Plus
CG11370-RB 1308 CG11370-RB 141..918 8..799 3690 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22712737..22713270 266..799 2655 99.8 Plus
3L 28110227 3L 22712502..22712672 96..266 855 100 Plus
3L 28110227 3L 22712301..22712384 13..96 420 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:20:13 has no hits.

BO13516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:29 Download gff for BO13516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:56 Download gff for BO13516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:41 Download gff for BO13516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 136..933 1..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:04 Download gff for BO13516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 136..933 1..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:04 Download gff for BO13516.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22712290..22712383 1..95 95 -> Plus
3L 22712502..22712672 96..266 100 -> Plus
3L 22712738..22713270 267..799 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:41 Download gff for BO13516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22705602..22705772 96..266 100 -> Plus
arm_3L 22705390..22705483 1..95 95 -> Plus
arm_3L 22705838..22706370 267..799 99   Plus

BO13516.complete Sequence

1072 bp assembled on 2006-10-11

GenBank Submission: FJ632803

> BO13516.complete
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGAC
GAGGAGGAAGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGA
GGAGCTGTCCGTGCCCGTAAAACCCATTAACCCTGTGCGCGTGCCCAACG
CCCGTCGTCCCGCAGACAAGAAGCCTGTGAAGGCTGCTTCTCCTGCCGGC
AAGCCCTCCAAGAAGCCCGCCGCCCCTCTGCCCGCTGGCACCTTTTTCCC
AATCGATTTCGGAGGCACCAACGGCGGCGCCATTGCCATTGCCAACTCTT
TCAGCACCGGCGAGGGCGGATCTGCTACCAGCCACGCCATCGCATACGGC
TCTCCGGAGTCCGCCGTCCGCCGAGCCCGCCCCAATCCCAGCAAGTTCCG
CCACGCAAGCTTTCTAGACCAT

BO13516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1041 CG11370-PA 1..1038 17..1054 5190 100 Plus
CG11370-RB 1026 CG11370-PB 1..1023 17..1054 4930 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1323 CG11370-RA 147..1188 13..1054 5210 100 Plus
CG11370-RB 1308 CG11370-RB 147..1173 13..1054 4950 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22712737..22713525 266..1054 3945 100 Plus
3L 28110227 3L 22712502..22712672 96..266 855 100 Plus
3L 28110227 3L 22712301..22712384 13..96 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:13 has no hits.

BO13516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:24 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 1..1041 17..1058 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:45 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 134..1194 1..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:14 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 151..1188 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:24 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 134..1194 1..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:51 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 151..1188 17..1056 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:51 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22712305..22712383 17..95 100 -> Plus
3L 22712502..22712672 96..266 100 -> Plus
3L 22712738..22713525 267..1056 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:14 Download gff for BO13516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22705405..22705483 17..95 100 -> Plus
arm_3L 22705602..22705772 96..266 100 -> Plus
arm_3L 22705838..22706625 267..1056 99   Plus

BO13516.pep Sequence

Translation from 16 to 1072

> BO13516.pep
MKFCAAVALLLIAGIVASGDALPARKRMVYLQQPAAAEWYGSAPHQRFMY
MQYVQPGRTHARSTQAASALVAGETVATGTYLKDCNHAESDTSAEGVPAD
DVLAAAGAHGATSVAEAYPDQAPVVQVATNSDVAPQAESEAEPEPEAADD
AAKVPRDFNFAAEEASVGSAAEEESVPLPVAEAELPAPAPIAPVAAVVPA
NRYLPAKKKVIVELDQEEEEPQAAAIEDEEEVENAVADDVEEDEEELSVP
VKPINPVRVPNARRPADKKPVKAASPAGKPSKKPAAPLPAGTFFPIDFGG
TNGGAIAIANSFSTGEGGSATSHAIAYGSPESAVRRARPNPSKFRHASFL
DH

BO13516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-PA 346 CG11370-PA 1..346 1..346 1756 100 Plus
CG11370-PB 341 CG11370-PB 1..341 1..346 1707 98.6 Plus