Clone BO13517 Report

Search the DGRC for BO13517

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:135
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG12125-RA
Protein status:BO13517.pep: validated full length
Sequenced Size:1609

Clone Sequence Records

BO13517.3prime Sequence

846 bp (776 high quality bases) assembled on 2006-05-08

> BO13517.3prime
ATGGTCTAGAAAGCTTGCCTGGCTAAATTTCACGCCAATGTTGTTGACGC
GCGTCTGCATGTGCTGCAGCACATCCTGCGAGAATTCCTCGATGGTCGTG
AAGCGGCTCTTTTGGAAGCTAAAGATGTCGCCCAGAAAGGCGAGCAGCTC
CTCTCGGAAGTAGTGGCAGATGTCTCGCAAGTTCTCGTTGGGTCCAAAGA
AGCCCCAGGCCATTAGCGGTGATATCTGCTCGGATATCACGTAAAAGTGG
GACATGAACCCGTTGGGGAACTTAAGCATCCGTTTCTTTGCCTTCAGCAC
CGACCACACGGCTGTTGTTAATGCCGTCTCTTTGAATCCGTTGGATAGCC
AGCGATTTTGGACAACCGCTGTTACGCTGGCAGGCGGAGCATCAAGATCC
TTGAACGAATCGAGGATAATGAAGTCCAAACAGATATCGTAGAAGGTCAT
CGCCTTGACATTGCGCTGCTCCAGCTCCATTTGGATGCAGGGCCAGTTGT
TGCTATCGTGCAGATAGTTCACCATGTCCTCGTAGCCCACAAGAAACTCC
TTGGTATCCTTATCGCCCAGACAAAGCAGATCGGTGAGAATCTGCCGACC
AGCATCGCAGATCCACTGGCCCACAGCGGGATCCTTGAAGAGGAACTGAA
AGGCCAACCGAACGCAGTGCAGCTTGGCCAGGTATTCGGTATCGGTGCTG
CAGTGCATCAACTCCGCCCGAATGGTACGACACGGCACCGTGTACTCATC
GTGATGCTTCAGTGCACTCTGGAATAGCGGATACTCTTCGTACGAGGTCT
CAATAAAGCCATCGAACTCACGCAGATCCGCCACCTGGTCGAGAGC

BO13517.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-PA 1578 CG12125-RA 748..1575 846..19 4115 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-RC 3773 CG12125-RC 2221..3048 846..19 4125 99.9 Minus
CG12125-RB 2286 CG12125-RB 1202..2029 846..19 4125 99.9 Minus
CG12125-RA 2754 CG12125-RA 1202..2029 846..19 4125 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8435017..8435539 324..846 2615 100 Plus
X 23542271 X 8434648..8434954 19..325 1520 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 12:27:13 has no hits.

BO13517.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:30 Download gff for BO13517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-PA 748..1578 15..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:57 Download gff for BO13517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-PA 748..1578 15..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:13 Download gff for BO13517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1202..2034 12..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:17 Download gff for BO13517.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1202..2034 12..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:17 Download gff for BO13517.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8434643..8434953 12..324 98 <- Plus
X 8435018..8435539 325..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:13 Download gff for BO13517.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8328676..8328986 12..324 98 <- Plus
arm_X 8329051..8329572 325..846 100   Plus

BO13517.5prime Sequence

885 bp (748 high quality bases) assembled on 2006-05-08

> BO13517.5prime
GAAGTTATCAGTCGACATGCAGCGCGTCATGCCGGCGTCCTGGAGCAGCG
GGGGCAGCCTGCTGCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTC
TTCTCACTGACCGCCGGCGTGGCCCTAATGAGCGTACTCTCCCGATTTCT
GCGACGTCGCAAGCCACCGCGTCCGCCTCGTCGAGCCAGGAAGTACACGG
GTCGGCGCAACCGCAACAGCATGCGCAGTCCAAACGATCTAATCTCGATA
GCCGGATCTAAGGCCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCACACT
GGCCTACTCGGATCGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTG
TATTGGGCGTACAAAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTG
ACGGCCCAACAGTTGGGCATGATGGGCATGGAGGCACTGGACACAGTGAT
CAACTTCTGGGAGGATGCCCTGGCGGCACACTACTCGCCCGGCGGTTTGC
CCGCCCTGTTGACCACGGCGGAGGACTCCGAGTTCTGTCGCGAGATCCAA
AACCTGCTGGAGATGGCCTACACGCTGCAGGAGCAGAGCGAACTGCTCTT
CCTGGACCAGCGATCGGTGCTGTTCCGCGAGGAGCATTCCATTGACGAGG
CCGAGGAGGAGGCGGGCGAGGCCGATGACGATCGGCGGTCACGCAAATCG
GGCAGCGTTCTCAGTCGCGCTGGTTCCGACCCGAACTTTGATTCCGCGGA
AAGCTTTGCTTCCGCTCTCGACCAGGTGGCGGATCTGCGTGAGTTCGATG
GCTTTATTGAGACCTCGTACGAAGAGTATCCGCTATTCCAGAGTGCACTG
AAGCATCACGATGAGTACACGGTGGCGTGTCGTAC

BO13517.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-PA 1578 CG12125-RA 1..869 17..885 4295 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-RC 3773 CG12125-RC 1474..2342 17..885 4315 99.8 Plus
CG12125-RB 2286 CG12125-RB 455..1323 17..885 4315 99.8 Plus
CG12125-RA 2754 CG12125-RA 455..1323 17..885 4315 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8435418..8436213 885..90 3950 99.7 Minus
X 23542271 X 8436271..8436347 93..17 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:50:19 has no hits.

BO13517.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:05:31 Download gff for BO13517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:51:59 Download gff for BO13517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:27 Download gff for BO13517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 451..1323 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:36 Download gff for BO13517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 451..1323 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:36 Download gff for BO13517.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8435418..8436211 92..885 99 <- Minus
X 8436273..8436351 9..91 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:27 Download gff for BO13517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8329451..8330244 92..885 99 <- Minus
arm_X 8330306..8330384 9..91 95   Minus

BO13517.complete Sequence

1609 bp assembled on 2006-10-11

GenBank Submission: FJ632804

> BO13517.complete
GAAGTTATCAGTCGACATGCAGCGCGTCATGCCGGCGTCCTGGAGCAGCG
GGGGCAGCCTGCTGCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTC
TTCTCACTGACCGCCGGCGTGGCCCTAATGAGCGTACTCTCCCGATTTCT
GCGACGTCGCAAGCCACCGCGTCCGCCTCGTCGAGCCAGGAAGTACACGG
GTCGGCGCAACCGCAACAGCATGCGCAGTCCAAACGATCTAATCTCGATA
GCCGGATCTAAGGCCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCACACT
GGCCTACTCGGATCGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTG
TATTGGGCGTACAAAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTG
ACGGCCCAACAGTTGGGCATGATGGGCATGGAGGCACTGGACACAGTGAT
CAACTTCTGGGAGGATGCCCTGGCGGCACACTACTCGCCCGGCGGTTTGC
CCGCCCTGTTGACCACGGCGGAGGACTCCGAGTTCTGTCGCGAGATCCAA
AACCTGCTGGAGATGGCCTACACGCTGCAGGAGCAGAGCGAACTGCTCTT
CCTGGACCAGCGATCGGTGCTGTTCCGCGAGGAGCATTCCATTGACGAGG
CCGAGGAGGAGGCGGGCGAGGCCGATGACGATCGGCGGTCACGCAAATCG
GGCAGCGTTCTCAGTCGCGCTGGTTCCGACCCGAACTTTGATTCCGCGGA
AAGCTTTGCTTCCGCTCTCGACCAGGTGGCGGATCTGCGTGAGTTCGATG
GCTTTATTGAGACCTCGTACGAAGAGTATCCGCTATTCCAGAGTGCACTG
AAGCATCACGATGAGTACACGGTGCCGTGTCGTACCATTCGGGCGGAGTT
GATGCACTGCAGCACCGATACCGAATACCTGGCCAAGCTGCACTGCGTTC
GGTTGGCCTTTCAGTTCCTCTTCAAGGATCCCGCTGTGGGCCAGTGGATC
TGCGATGCTGGTCGGCAGATTCTCACCGATCTGCTTTGTCTGGGCGATAA
GGATACCAAGGAGTTTCTTGTGGGCTACGAGGACATGGTGAACTATCTGC
ACGATAGCAACAACTGGCCCTGCATCCAAATGGAGCTGGAGCAGCGCAAT
GTCAAGGCGATGACCTTCTACGATATCTGTTTGGACTTCATTATCCTCGA
TTCGTTCAAGGATCTTGATGCTCCGCCTGCCAGCGTAACAGCGGTTGTCC
AAAATCGCTGGCTATCCAACGGATTCAAAGAGACGGCATTAACAACAGCC
GTGTGGTCGGTGCTGAAGGCAAAGAAACGGATGCTTAAGTTCCCCAACGG
GTTCATGTCCCACTTTTACGTGATATCCGAGCAGATATCACCGCTAATGG
CCTGGGGCTTCTTTGGACCCAACGAGAACTTGCGAGACATCTGCCACTAC
TTCCGAGAGGAGCTGCTCGCCTTTCTGGGCGACATCTTTAGCTTCCAAAA
GAGCCGCTTCACGACCATCGAGGAATTCTCGCAGGATGTGCTGCAGCACA
TGCAGACGCGCGTCAACAACATTGGCGTGAAATTTAGCCAGGCAAGCTTT
CTAGACCAT

BO13517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-RC 1578 CG12125-PC 1..1575 17..1591 7845 99.9 Plus
CG12125-RB 1578 CG12125-PB 1..1575 17..1591 7845 99.9 Plus
CG12125-RA 1578 CG12125-PA 1..1575 17..1591 7845 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-RC 3773 CG12125-RC 1474..3048 17..1591 7845 99.9 Plus
CG12125-RB 2286 CG12125-RB 455..2029 17..1591 7845 99.9 Plus
CG12125-RA 2754 CG12125-RA 455..2029 17..1591 7845 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8435017..8436213 1286..90 5970 99.9 Minus
X 23542271 X 8434648..8434954 1591..1285 1520 99.7 Minus
X 23542271 X 8436271..8436347 93..17 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:02:38 has no hits.

BO13517.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:06 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 1..1578 17..1595 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:25 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RB 450..2033 9..1598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:20 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 455..2029 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:06 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 450..2033 9..1598 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:28 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
CG12125-RA 455..2029 17..1593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:28 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
X 8434646..8434953 1286..1593 99 <- Minus
X 8435018..8436211 92..1285 99 <- Minus
X 8436273..8436347 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:20 Download gff for BO13517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8328679..8328986 1286..1593 99 <- Minus
arm_X 8329051..8330244 92..1285 99 <- Minus
arm_X 8330306..8330380 17..91 100   Minus

BO13517.pep Sequence

Translation from 16 to 1609

> BO13517.pep
MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP
PRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDR
LSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWED
ALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRS
VLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASA
LDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCST
DTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEF
LVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDL
DAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF
YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTT
IEEFSQDVLQHMQTRVNNIGVKFSQASFLDH

BO13517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG12125-PC 525 CG12125-PC 1..525 1..525 2717 100 Plus
CG12125-PB 525 CG12125-PB 1..525 1..525 2717 100 Plus
CG12125-PA 525 CG12125-PA 1..525 1..525 2717 100 Plus